Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47521 * 2 1 4 4 C 1.42900 * 114.00427 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47029 * 180.02562 * 4 3 2 6 6 S 1.81400 * 109.47028 * 180.02562 * 5 4 3 7 7 O 1.42107 * 110.54324 * 68.36996 * 6 5 4 8 8 O 1.42097 * 110.54265 * 291.62480 * 6 5 4 9 9 N 1.65594 * 104.45186 * 179.97438 * 6 5 4 10 10 C 1.34779 * 119.99984 * 64.99742 * 9 6 5 11 11 O 1.21286 * 119.99701 * 0.02562 * 10 9 6 12 12 C 1.50701 * 120.00388 * 180.02562 * 10 9 6 13 13 C 1.50698 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.37633 * 120.12482 * 264.99709 * 13 12 10 15 15 C 1.38620 * 120.24819 * 179.97438 * 14 13 12 16 16 C 1.38653 * 120.49963 * 0.02562 * 15 14 13 17 17 C 1.37603 * 120.24949 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12822 * 84.72533 * 13 12 10 19 19 C 1.41396 * 120.24692 * 359.97438 * 18 13 12 20 20 H 1.08002 * 119.99440 * 333.89889 * 19 18 13 21 21 C 1.39936 * 120.00256 * 153.89938 * 19 18 13 22 22 N 1.30823 * 120.00218 * 343.70459 * 21 19 18 23 23 Si 1.86806 * 120.00088 * 163.70691 * 21 19 18 24 24 H 1.48494 * 109.47040 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47003 * 120.00050 * 23 21 19 26 26 H 1.48501 * 109.47005 * 240.00090 * 23 21 19 27 27 H 1.08998 * 109.46834 * 60.00126 * 1 2 3 28 28 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47131 * 299.99853 * 1 2 3 30 30 H 1.09001 * 109.47131 * 240.00147 * 2 1 3 31 31 H 1.09004 * 109.47227 * 120.00023 * 2 1 3 32 32 H 1.08995 * 109.47113 * 59.99997 * 4 3 2 33 33 H 1.08996 * 109.46948 * 300.00074 * 4 3 2 34 34 H 1.08995 * 109.47579 * 59.99788 * 5 4 3 35 35 H 1.09002 * 109.46877 * 300.00033 * 5 4 3 36 36 H 0.96998 * 120.00276 * 245.00215 * 9 6 5 37 37 H 1.09002 * 109.46474 * 300.00190 * 12 10 9 38 38 H 1.08995 * 109.46963 * 60.00128 * 12 10 9 39 39 H 1.08008 * 119.87960 * 0.02562 * 14 13 12 40 40 H 1.07995 * 119.74938 * 179.97438 * 15 14 13 41 41 H 1.08002 * 119.87746 * 180.02562 * 16 15 14 42 42 H 1.08001 * 120.12586 * 179.97438 * 17 16 15 43 43 H 0.97001 * 120.00340 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 16 5.6338 3.0816 0.0012 7 8 6.1696 2.6325 -1.2361 8 8 6.1696 2.6317 1.2379 9 7 5.9191 4.7128 0.0011 10 6 5.5493 5.4617 1.0589 11 8 5.0079 4.9407 2.0110 12 6 5.8084 6.9462 1.0587 13 6 5.3041 7.5443 2.3467 14 6 4.0451 8.0972 2.4052 15 6 3.5784 8.6476 3.5888 16 6 4.3723 8.6486 4.7255 17 6 5.6347 8.1023 4.6898 18 6 6.1163 7.5346 3.4955 19 6 7.4091 6.9638 3.4490 20 1 7.6321 6.1901 2.7292 21 6 8.3995 7.4013 4.3355 22 7 8.2489 8.5302 4.9793 23 14 9.9367 6.3733 4.5998 24 1 9.8654 5.1511 3.7595 25 1 11.1336 7.1658 4.2193 26 1 10.0335 5.9863 6.0302 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8341 0.9765 -0.8891 33 1 3.8333 0.9767 0.8908 34 1 3.4223 3.4217 0.8911 35 1 3.4230 3.4222 -0.8888 36 1 6.3524 5.1294 -0.7602 37 1 6.8794 7.1280 0.9689 38 1 5.2901 7.4054 0.2170 39 1 3.4179 8.1015 1.5259 40 1 2.5893 9.0796 3.6255 41 1 3.9984 9.0798 5.6424 42 1 6.2516 8.1045 5.5764 43 1 8.9352 8.8332 5.5941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761105702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = -167.533851 kcal Electronic energy + Delta-G solvation = -27600.923288 eV Core-core repulsion = 23544.064236 eV Total energy + Delta-G solvation = -4056.859052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20927 -39.22767 -39.19976 -38.37970 -37.33554 -35.50612 -35.47952 -33.75190 -33.40901 -31.33192 -31.22360 -28.71867 -26.91760 -24.72611 -23.77310 -23.32458 -22.79377 -21.30464 -20.69878 -19.33595 -19.01939 -18.54183 -18.00770 -17.55865 -17.32828 -17.16623 -16.50368 -16.35240 -16.23687 -15.71295 -15.49565 -15.26735 -15.14489 -15.08158 -14.37586 -13.99328 -13.56256 -13.46423 -13.44864 -13.42156 -13.38051 -13.31438 -13.14492 -12.91265 -12.79109 -12.73634 -12.50120 -12.35583 -12.23668 -12.13993 -12.12128 -11.72375 -11.30985 -11.28008 -11.14743 -11.02368 -10.73726 -9.20798 -9.16720 -8.60272 -6.29585 -1.16863 0.94284 1.08444 1.21560 1.36111 1.37581 1.48848 1.52217 2.19839 2.28919 2.77207 2.78152 2.98799 3.38324 3.50326 3.65284 3.86946 4.02532 4.07282 4.12201 4.27076 4.34422 4.39919 4.43203 4.45328 4.58244 4.63233 4.74000 4.82067 4.83832 4.99300 5.08311 5.21290 5.23857 5.38765 5.56132 5.71807 5.81525 6.04223 6.05518 6.18139 6.24560 6.42319 6.62495 6.76215 6.99206 7.12198 8.35813 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.003370 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.833803 B = 8307.254786 C = 9523.852456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.039 3.961 3 O -0.398 6.398 4 C 0.066 3.934 5 C -0.613 4.613 6 S 2.611 3.389 7 O -0.955 6.955 8 O -0.973 6.973 9 N -1.040 6.040 10 C 0.537 3.463 11 O -0.519 6.519 12 C -0.073 4.073 13 C -0.195 4.195 14 C -0.084 4.084 15 C -0.241 4.241 16 C -0.116 4.116 17 C -0.194 4.194 18 C 0.095 3.905 19 C -0.484 4.484 20 H 0.072 0.928 21 C 0.039 3.961 22 N -0.823 5.823 23 Si 0.961 3.039 24 H -0.266 1.266 25 H -0.258 1.258 26 H -0.270 1.270 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.141 0.859 35 H 0.173 0.827 36 H 0.451 0.549 37 H 0.110 0.890 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 -10.709 -14.375 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.037 4.037 3 O -0.318 6.318 4 C -0.012 4.012 5 C -0.744 4.744 6 S 2.707 3.293 7 O -0.945 6.945 8 O -0.964 6.964 9 N -0.808 5.808 10 C 0.326 3.674 11 O -0.391 6.391 12 C -0.114 4.114 13 C -0.198 4.198 14 C -0.102 4.102 15 C -0.260 4.260 16 C -0.134 4.134 17 C -0.213 4.213 18 C 0.093 3.907 19 C -0.514 4.514 20 H 0.090 0.910 21 C -0.176 4.176 22 N -0.449 5.449 23 Si 0.783 3.217 24 H -0.190 1.190 25 H -0.182 1.182 26 H -0.195 1.195 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.191 0.809 36 H 0.291 0.709 37 H 0.128 0.872 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.129 -11.422 -13.509 19.469 hybrid contribution 0.618 0.109 0.503 0.804 sum -7.511 -11.313 -13.006 18.803 Atomic orbital electron populations 1.21782 0.92507 1.03678 1.02799 1.22860 0.96774 0.82410 1.01662 1.87915 1.19515 1.28716 1.95687 1.22137 0.84058 0.92058 1.02926 1.30496 1.23472 1.05777 1.14687 1.04969 0.78079 0.72898 0.73336 1.93619 1.77252 1.78832 1.44825 1.93635 1.76806 1.79364 1.46558 1.54786 1.68451 1.29551 1.28052 1.21417 0.74676 0.91747 0.79575 1.90843 1.40674 1.74175 1.33439 1.20504 1.04915 0.87834 0.98149 1.19506 0.97013 1.08999 0.94238 1.20794 0.94495 0.97391 0.97560 1.20748 1.00487 1.10587 0.94224 1.20962 0.94603 0.99833 0.98042 1.21306 0.95701 1.05970 0.98369 1.17748 0.92719 0.89334 0.90896 1.19684 0.95526 1.19138 1.17063 0.90975 1.26569 1.02725 0.94780 0.93511 1.69871 1.35203 1.18062 1.21797 0.85463 0.77859 0.79289 0.79050 1.19004 1.18197 1.19467 0.91825 0.88713 0.92665 0.91229 0.92455 0.89322 0.91651 0.84109 0.80913 0.70857 0.87178 0.84239 0.85476 0.86615 0.87947 0.88792 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.04 0.62 6.66 71.98 0.48 1.10 16 3 O -0.40 -8.86 10.34 -148.98 -1.54 -10.40 16 4 C 0.07 1.38 5.95 71.98 0.43 1.80 16 5 C -0.61 -13.12 6.25 71.98 0.45 -12.67 16 6 S 2.61 68.73 5.11 -56.49 -0.29 68.44 16 7 O -0.95 -25.22 18.08 -127.65 -2.31 -27.53 16 8 O -0.97 -36.55 17.04 -120.72 -2.06 -38.61 16 9 N -1.04 -25.30 5.60 -173.52 -0.97 -26.28 16 10 C 0.54 18.08 7.18 87.66 0.63 18.71 16 11 O -0.52 -22.25 14.14 13.32 0.19 -22.06 16 12 C -0.07 -2.41 5.18 29.10 0.15 -2.26 16 13 C -0.20 -8.65 4.43 -19.41 -0.09 -8.74 16 14 C -0.08 -3.43 9.66 22.22 0.21 -3.22 16 15 C -0.24 -10.30 10.05 22.46 0.23 -10.08 16 16 C -0.12 -5.53 10.02 22.22 0.22 -5.30 16 17 C -0.19 -10.49 8.69 22.73 0.20 -10.29 16 18 C 0.10 5.05 5.56 -21.29 -0.12 4.93 16 19 C -0.48 -25.83 8.14 23.46 0.19 -25.64 16 20 H 0.07 3.75 6.67 -2.91 -0.02 3.73 16 21 C 0.04 2.00 5.16 85.25 0.44 2.44 16 22 N -0.82 -43.42 10.96 21.82 0.24 -43.18 16 23 Si 0.96 39.97 29.59 68.60 2.03 42.00 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.14 3.58 7.19 -2.39 -0.02 3.56 16 35 H 0.17 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.45 6.89 8.79 -96.75 -0.85 6.04 16 37 H 0.11 3.63 7.08 -2.39 -0.02 3.62 16 38 H 0.14 3.11 8.05 -2.39 -0.02 3.10 16 39 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 41 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.09 5.39 6.21 -2.91 -0.02 5.37 16 43 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 Total: -1.00 -77.70 376.99 -0.36 -78.06 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.18 Total: 30.02 kcal Atomic # 6 Polarization: -54.62 SS G_CDS: 4.16 Total: -50.46 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -0.73 Total: -69.46 kcal Atomic # 8 Polarization: -92.88 SS G_CDS: -5.72 Total: -98.60 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 16 Polarization: 68.73 SS G_CDS: -0.29 Total: 68.44 kcal Total: -77.70 -0.36 -78.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761105702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.477 kcal (2) G-P(sol) polarization free energy of solvation -77.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds