Wall clock time and date at job start Sat Apr 11 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.53001 * 109.46892 * 85.00151 * 3 2 1 5 5 C 1.52996 * 109.46868 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47039 * 180.02562 * 5 4 3 7 7 O 1.20823 * 120.00221 * 359.97438 * 6 5 4 8 8 O 1.34232 * 120.00053 * 180.02562 * 6 5 4 9 9 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 10 10 O 1.42099 * 106.40401 * 203.53818 * 9 2 1 11 11 O 1.42103 * 106.40122 * 336.45794 * 9 2 1 12 12 C 1.76205 * 107.21913 * 89.99801 * 9 2 1 13 13 C 1.38237 * 119.99944 * 269.72681 * 12 9 2 14 14 C 1.38228 * 119.99822 * 179.76597 * 13 12 9 15 15 C 1.38240 * 119.99917 * 0.50634 * 14 13 12 16 16 C 1.50704 * 119.99792 * 179.72576 * 15 14 13 17 17 C 1.50701 * 109.46916 * 270.02272 * 16 15 14 18 18 H 1.08005 * 120.00117 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99767 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99910 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00318 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47374 * 89.99667 * 21 19 17 23 23 H 1.48494 * 109.47096 * 210.00329 * 21 19 17 24 24 H 1.48500 * 109.46433 * 329.99817 * 21 19 17 25 25 C 1.38229 * 120.00165 * 359.74764 * 15 14 13 26 26 C 1.38227 * 119.99711 * 89.99833 * 12 9 2 27 27 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 28 28 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 29 29 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 30 30 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 31 31 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 32 32 H 1.09001 * 109.47188 * 299.99915 * 4 3 2 33 33 H 1.08997 * 109.47202 * 59.99921 * 4 3 2 34 34 H 1.09001 * 109.47272 * 300.00016 * 5 4 3 35 35 H 1.09003 * 109.47509 * 60.00204 * 5 4 3 36 36 H 0.96700 * 117.00504 * 180.02562 * 8 6 5 37 37 H 1.07998 * 120.00039 * 359.97438 * 13 12 9 38 38 H 1.08003 * 120.00273 * 180.23306 * 14 13 12 39 39 H 1.09000 * 109.47411 * 30.01925 * 16 15 14 40 40 H 1.09002 * 109.47201 * 150.02446 * 16 15 14 41 41 H 0.97000 * 120.00693 * 180.02562 * 20 19 17 42 42 H 1.07995 * 119.99963 * 179.97438 * 25 15 14 43 43 H 1.08000 * 120.00682 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7732 1.4370 5 6 3.1093 3.0978 1.4371 6 6 3.2538 3.5944 2.8525 7 8 2.7915 2.9548 3.7674 8 8 3.8952 4.7480 3.0969 9 16 2.2930 -1.4342 -0.0006 10 8 3.5760 -1.1571 0.5439 11 8 1.4113 -2.4067 0.5434 12 6 2.5537 -1.8852 -1.6839 13 6 1.6219 -2.6654 -2.3427 14 6 1.8242 -3.0151 -3.6647 15 6 2.9633 -2.5935 -4.3247 16 6 3.1867 -2.9800 -5.7641 17 6 3.9395 -4.2841 -5.8229 18 1 4.2270 -4.7834 -4.9094 19 6 4.2612 -4.8400 -7.0430 20 7 4.9186 -5.9778 -7.0944 21 14 3.7633 -3.9769 -8.6231 22 1 4.8435 -3.0477 -9.0412 23 1 3.5385 -4.9862 -9.6888 24 1 2.5119 -3.2105 -8.3951 25 6 3.8975 -1.8177 -3.6644 26 6 3.6927 -1.4635 -2.3439 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 3.1859 1.1177 -0.4343 31 1 1.6502 2.0043 -0.5894 32 1 1.3555 1.9242 1.8714 33 1 2.8910 1.0376 2.0264 34 1 4.0975 2.9464 1.0029 35 1 2.5623 3.8337 0.8476 36 1 3.9631 5.0255 4.0208 37 1 0.7344 -2.9988 -1.8256 38 1 1.0944 -3.6215 -4.1806 39 1 2.2244 -3.0931 -6.2635 40 1 3.7660 -2.2032 -6.2632 41 1 5.1454 -6.3688 -7.9527 42 1 4.7876 -1.4887 -4.1799 43 1 4.4231 -0.8580 -1.8278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887328251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:26 Heat of formation + Delta-G solvation = -150.533789 kcal Electronic energy + Delta-G solvation = -26897.107956 eV Core-core repulsion = 22840.986082 eV Total energy + Delta-G solvation = -4056.121874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60895 -38.91592 -37.44439 -37.14981 -36.46016 -35.79064 -33.71111 -33.48500 -31.76146 -30.67646 -28.50777 -27.99293 -25.82365 -23.52270 -23.02625 -22.44158 -21.10797 -20.72091 -19.10815 -18.45541 -17.90746 -17.42175 -17.01599 -16.93045 -16.56544 -16.10743 -15.22748 -15.10891 -14.68747 -14.52707 -14.30444 -14.28665 -13.83229 -13.53162 -13.23276 -13.15975 -12.85439 -12.76349 -12.63366 -12.46026 -12.10661 -12.04426 -11.94757 -11.91306 -11.85125 -11.80267 -11.62750 -11.10839 -10.97634 -10.96201 -10.93824 -10.55069 -10.26710 -10.12566 -9.57666 -9.33980 -8.72405 -8.66767 -8.47052 -6.20175 -4.21903 0.38320 1.23381 1.70130 1.83693 2.60928 2.93653 3.18502 3.27102 3.27685 3.73367 4.00365 4.26280 4.28768 4.36881 4.46207 4.63997 4.65746 4.98404 5.05050 5.08527 5.14122 5.15033 5.17709 5.22519 5.29140 5.48847 5.54182 5.55738 5.70651 5.79463 5.81196 5.89458 6.12412 6.13019 6.21074 6.28646 6.43749 6.67281 6.67788 6.78824 7.26400 7.27437 7.50409 7.51563 8.32656 8.83369 9.37835 10.92269 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.002311 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.461270 B =12114.103819 C =12677.639614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.002 6.002 3 C 0.126 3.874 4 C -0.135 4.135 5 C -0.112 4.112 6 C 0.478 3.522 7 O -0.514 6.514 8 O -0.520 6.520 9 S 2.693 3.307 10 O -0.958 6.958 11 O -0.959 6.959 12 C -0.701 4.701 13 C -0.023 4.023 14 C -0.142 4.142 15 C 0.031 3.969 16 C 0.006 3.994 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.143 4.143 26 C -0.023 4.023 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.410 0.590 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.266 0.734 42 H 0.130 0.870 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 21.586 14.750 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.839 5.839 3 C 0.000 4.000 4 C -0.174 4.174 5 C -0.150 4.150 6 C 0.320 3.680 7 O -0.402 6.402 8 O -0.332 6.332 9 S 2.786 3.214 10 O -0.949 6.949 11 O -0.950 6.950 12 C -0.791 4.791 13 C -0.042 4.042 14 C -0.161 4.161 15 C 0.030 3.970 16 C -0.031 4.031 17 C -0.558 4.558 18 H 0.093 0.907 19 C -0.131 4.131 20 N -0.531 5.531 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.162 4.162 26 C -0.043 4.043 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.269 0.731 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.148 0.852 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.499 20.684 15.206 26.745 hybrid contribution -0.093 0.476 -1.067 1.172 sum -7.592 21.159 14.139 26.557 Atomic orbital electron populations 1.21506 0.78018 1.03348 1.02321 1.57516 1.15366 1.21196 1.89857 1.21269 0.97171 0.85370 0.96204 1.21942 1.01708 0.95501 0.98249 1.21303 1.04660 0.98665 0.90403 1.23549 0.73702 0.77794 0.92919 1.90752 1.45674 1.56592 1.47165 1.84539 1.71669 1.40180 1.36808 1.01885 0.73015 0.72148 0.74330 1.93557 1.39990 1.84360 1.76957 1.93561 1.66243 1.58162 1.76993 1.30456 1.05761 1.17219 1.25623 1.20772 0.96514 0.92573 0.94387 1.21225 0.98968 1.01509 0.94430 1.20706 0.90765 0.87637 0.97879 1.18986 0.98185 0.98043 0.87877 1.20818 1.36225 1.04015 0.94747 0.90666 1.24994 0.94363 0.94702 0.99018 1.69886 1.39142 1.18161 1.25938 0.86783 0.79656 0.79675 0.83259 1.20037 1.21063 1.18959 1.21223 1.00023 1.00447 0.94466 1.20763 0.93789 0.95336 0.94375 0.92261 0.90838 0.90776 0.89508 0.89788 0.90322 0.89847 0.86958 0.87285 0.73123 0.85161 0.85214 0.94807 0.95236 0.92356 0.85211 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.33 59.85 0.62 1.33 16 2 N -1.00 -9.67 3.18 -121.75 -0.39 -10.06 16 3 C 0.13 0.91 5.37 -4.04 -0.02 0.89 16 4 C -0.13 -1.05 4.83 -26.73 -0.13 -1.18 16 5 C -0.11 -0.62 5.81 -27.89 -0.16 -0.79 16 6 C 0.48 3.76 8.33 36.00 0.30 4.06 16 7 O -0.51 -5.97 16.74 -18.75 -0.31 -6.28 16 8 O -0.52 -2.95 13.42 -39.26 -0.53 -3.48 16 9 S 2.69 36.88 5.60 -107.50 -0.60 36.28 16 10 O -0.96 -14.88 16.25 -57.17 -0.93 -15.81 16 11 O -0.96 -15.46 16.35 -57.17 -0.93 -16.40 16 12 C -0.70 -10.64 5.97 -39.59 -0.24 -10.88 16 13 C -0.02 -0.36 9.52 -39.59 -0.38 -0.74 16 14 C -0.14 -2.53 9.70 -39.58 -0.38 -2.91 16 15 C 0.03 0.60 5.07 -104.62 -0.53 0.07 16 16 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 17 C -0.52 -14.18 9.65 -34.44 -0.33 -14.51 16 18 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 20 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 21 Si 0.88 20.42 27.47 -169.99 -4.67 15.75 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 25 C -0.14 -2.51 9.70 -39.58 -0.38 -2.89 16 26 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.38 7.94 -51.93 -0.41 -0.04 16 29 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 30 H 0.09 0.61 7.61 -51.93 -0.40 0.21 16 31 H 0.08 0.38 7.96 -51.93 -0.41 -0.03 16 32 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.41 0.79 9.10 45.56 0.41 1.21 16 37 H 0.13 1.74 7.61 -52.49 -0.40 1.34 16 38 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 39 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 40 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 43 H 0.13 1.67 7.62 -52.49 -0.40 1.27 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -36.91 380.50 -9.40 -46.31 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.31 Total: 0.17 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -2.23 Total: -26.36 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.39 Total: -35.91 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.70 Total: -41.98 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Atomic # 16 Polarization: 36.88 SS G_CDS: -0.60 Total: 36.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.91 -9.40 -46.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887328251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.222 kcal (2) G-P(sol) polarization free energy of solvation -36.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds