Wall clock time and date at job start Sat Apr 11 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46499 * 109.46679 * 294.99474 * 4 2 1 6 6 C 1.46496 * 120.00515 * 274.99899 * 5 4 2 7 7 S 1.65609 * 119.99771 * 95.00509 * 5 4 2 8 8 O 1.42099 * 106.39971 * 203.53753 * 7 5 4 9 9 O 1.42104 * 106.40092 * 336.45681 * 7 5 4 10 10 C 1.76198 * 107.21903 * 89.99620 * 7 5 4 11 11 C 1.38238 * 119.99725 * 269.72855 * 10 7 5 12 12 C 1.38234 * 119.99605 * 179.76766 * 11 10 7 13 13 C 1.38234 * 120.00160 * 0.48383 * 12 11 10 14 14 C 1.50703 * 120.00329 * 179.76875 * 13 12 11 15 15 C 1.50701 * 109.46811 * 270.02239 * 14 13 12 16 16 H 1.07995 * 120.00433 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99836 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00308 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46892 * 59.99846 * 19 17 15 21 21 H 1.48498 * 109.47312 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46848 * 300.00132 * 19 17 15 23 23 C 1.38242 * 119.99791 * 359.79026 * 13 12 11 24 24 C 1.38229 * 119.99914 * 90.00412 * 10 7 5 25 25 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 26 26 O 1.20828 * 120.00000 * 240.00227 * 25 2 1 27 27 O 1.34231 * 120.00154 * 60.00281 * 25 2 1 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 32 32 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 33 33 H 1.08997 * 109.46960 * 90.00475 * 6 5 4 34 34 H 1.08999 * 109.47429 * 210.00208 * 6 5 4 35 35 H 1.08996 * 109.46954 * 330.00568 * 6 5 4 36 36 H 1.07992 * 120.00277 * 359.97438 * 11 10 7 37 37 H 1.07998 * 119.99894 * 180.24771 * 12 11 10 38 38 H 1.09000 * 109.46757 * 30.02013 * 14 13 12 39 39 H 1.08991 * 109.47157 * 150.02159 * 14 13 12 40 40 H 0.96995 * 119.99938 * 180.02562 * 18 17 15 41 41 H 1.07996 * 119.99635 * 179.97438 * 23 13 12 42 42 H 1.07996 * 120.00208 * 359.97438 * 24 10 7 43 43 H 0.96701 * 116.99767 * 179.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4423 6 6 2.4892 1.1426 2.9114 7 16 0.2685 -0.3610 3.2609 8 8 -0.1286 0.8067 3.9667 9 8 -0.5711 -1.0294 2.3295 10 6 0.7076 -1.5544 4.4806 11 6 0.6624 -2.9022 4.1765 12 6 1.0115 -3.8383 5.1319 13 6 1.3961 -3.4271 6.3943 14 6 1.7717 -4.4478 7.4375 15 6 0.5440 -4.8458 8.2156 16 1 -0.4124 -4.4037 7.9788 17 6 0.6418 -5.7746 9.2300 18 7 1.8066 -6.3128 9.5187 19 14 -0.8800 -6.2687 10.1941 20 1 -1.8843 -6.8523 9.2688 21 1 -0.5099 -7.2743 11.2221 22 1 -1.4555 -5.0715 10.8581 23 6 1.4358 -2.0795 6.7001 24 6 1.0917 -1.1432 5.7432 25 6 2.0323 -0.7104 -1.2304 26 8 2.7269 -1.6929 -1.1195 27 8 1.7081 -0.2519 -2.4496 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7199 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 2.1625 2.0697 2.4405 34 1 2.3985 1.2334 3.9938 35 1 3.5292 0.9486 2.6489 36 1 0.3577 -3.2236 3.1916 37 1 0.9801 -4.8911 4.8931 38 1 2.1939 -5.3267 6.9503 39 1 2.5089 -4.0193 8.1163 40 1 1.8754 -6.9665 10.2321 41 1 1.7359 -1.7583 7.6866 42 1 1.1230 -0.0904 5.9819 43 1 2.0542 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887330158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:30 Heat of formation + Delta-G solvation = -169.637886 kcal Electronic energy + Delta-G solvation = -27628.114565 eV Core-core repulsion = 23571.164275 eV Total energy + Delta-G solvation = -4056.950290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39777 -40.24418 -38.53638 -38.04069 -37.04371 -36.92778 -35.61038 -33.96643 -33.31833 -31.97977 -29.26291 -28.42204 -26.66935 -25.61888 -24.81917 -23.74579 -22.45140 -21.43333 -20.06844 -19.25600 -18.84165 -18.60119 -18.52785 -17.63241 -17.14117 -16.86434 -16.78360 -16.12865 -16.01675 -15.64988 -15.24274 -15.12296 -14.74133 -14.62813 -14.48625 -14.23233 -14.07771 -13.89595 -13.59045 -13.41559 -13.36929 -13.34425 -13.14241 -12.84517 -12.66548 -12.65971 -12.52892 -12.49358 -12.33548 -12.06242 -12.04174 -11.98893 -11.70652 -11.45886 -11.40376 -10.66048 -10.19796 -9.98156 -9.93561 -8.27981 -6.41039 -0.69937 -0.07435 0.37950 1.20862 1.37823 1.39553 1.48062 1.80277 2.20219 2.34149 2.56122 2.78718 3.04504 3.24135 3.59380 3.67008 3.84783 3.94906 4.00210 4.13975 4.16265 4.40158 4.45459 4.46265 4.60024 4.72596 4.76969 4.80224 4.82560 4.88933 4.93900 5.02700 5.06949 5.08812 5.22819 5.24531 5.31961 5.36098 5.51042 5.64345 5.65777 5.84672 5.91089 6.08546 6.70505 7.01035 7.28011 8.81972 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002577 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.192572 B =10864.345155 C =11295.039165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.142 0.858 4 C 0.132 3.868 5 N -0.990 5.990 6 C 0.077 3.923 7 S 2.712 3.288 8 O -0.976 6.976 9 O -0.965 6.965 10 C -0.704 4.704 11 C -0.020 4.020 12 C -0.156 4.156 13 C -0.004 4.004 14 C 0.048 3.952 15 C -0.535 4.535 16 H 0.054 0.946 17 C 0.009 3.991 18 N -0.926 5.926 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.155 4.155 24 C -0.021 4.021 25 C 0.497 3.503 26 O -0.547 6.547 27 O -0.509 6.509 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.155 0.845 37 H 0.128 0.872 38 H 0.012 0.988 39 H 0.014 0.986 40 H 0.268 0.732 41 H 0.131 0.869 42 H 0.157 0.843 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 17.231 -21.882 27.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.159 0.841 4 C 0.006 3.994 5 N -0.829 5.829 6 C -0.067 4.067 7 S 2.802 3.198 8 O -0.966 6.966 9 O -0.955 6.955 10 C -0.791 4.791 11 C -0.039 4.039 12 C -0.175 4.175 13 C -0.004 4.004 14 C 0.012 3.988 15 C -0.573 4.573 16 H 0.072 0.928 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.174 4.174 24 C -0.040 4.040 25 C 0.340 3.660 26 O -0.438 6.438 27 O -0.323 6.323 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.172 0.828 37 H 0.146 0.854 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.077 0.923 41 H 0.149 0.851 42 H 0.175 0.825 43 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 1.389 17.409 -21.544 27.733 hybrid contribution 0.196 -1.671 0.897 1.906 sum 1.585 15.738 -20.647 26.010 Atomic orbital electron populations 1.21915 0.91470 1.03801 1.02952 1.21489 0.98808 1.02872 0.89109 0.84070 1.21285 1.02872 0.93904 0.81309 1.57252 1.44125 1.44131 1.37354 1.21890 0.96399 0.87962 1.00492 1.01389 0.73078 0.72801 0.72482 1.93542 1.80702 1.47651 1.74734 1.93589 1.64286 1.76574 1.61069 1.30942 1.21487 1.12061 1.14574 1.21021 0.92151 0.91034 0.99727 1.21311 1.02273 1.00506 0.93419 1.20827 0.89644 0.95476 0.94485 1.18259 0.96340 0.92289 0.91957 1.21261 0.94447 1.24283 1.17297 0.92790 1.25878 0.99340 0.95776 0.97971 1.70050 1.25631 1.29307 1.31486 0.85510 0.79090 0.78299 0.78262 1.19380 1.20347 1.19285 1.21322 1.03143 0.92489 1.00412 1.21046 0.91482 1.00559 0.90914 1.23313 0.75751 0.81575 0.85400 1.90751 1.37685 1.27490 1.87831 1.84485 1.71908 1.58994 1.16879 0.89867 0.92715 0.91671 0.89805 0.87411 0.90363 0.90741 0.88295 0.82790 0.85385 0.96945 0.96790 0.92343 0.85115 0.82535 0.70965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.55 71.98 0.54 -1.83 16 2 C -0.10 -1.39 3.03 -11.54 -0.03 -1.42 16 3 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.13 2.10 4.34 86.38 0.38 2.47 16 5 N -0.99 -16.70 2.91 -539.14 -1.57 -18.27 16 6 C 0.08 0.88 10.33 127.77 1.32 2.20 16 7 S 2.71 66.58 4.81 -56.49 -0.27 66.31 16 8 O -0.98 -27.71 16.36 -128.00 -2.09 -29.80 16 9 O -0.97 -26.15 12.68 -128.00 -1.62 -27.77 16 10 C -0.70 -20.93 5.97 22.27 0.13 -20.80 16 11 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 12 C -0.16 -5.94 9.70 22.27 0.22 -5.73 16 13 C 0.00 -0.17 5.07 -19.86 -0.10 -0.27 16 14 C 0.05 2.51 5.10 29.10 0.15 2.66 16 15 C -0.54 -30.01 9.09 25.60 0.23 -29.77 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.01 0.53 5.46 84.66 0.46 0.99 16 18 N -0.93 -54.55 13.29 21.45 0.28 -54.26 16 19 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C -0.15 -5.79 9.70 22.27 0.22 -5.58 16 24 C -0.02 -0.65 9.52 22.27 0.21 -0.44 16 25 C 0.50 7.56 7.63 71.24 0.54 8.10 16 26 O -0.55 -11.89 16.68 21.96 0.37 -11.52 16 27 O -0.51 -5.11 13.33 -51.43 -0.69 -5.79 16 28 H 0.08 1.08 8.11 -2.39 -0.02 1.06 16 29 H 0.05 1.00 5.78 -2.39 -0.01 0.99 16 30 H 0.06 1.29 7.45 -2.38 -0.02 1.27 16 31 H 0.08 1.54 7.61 -2.39 -0.02 1.52 16 32 H 0.11 1.43 7.78 -2.39 -0.02 1.41 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.91 7.79 -2.39 -0.02 0.89 16 35 H 0.10 0.70 7.94 -2.39 -0.02 0.68 16 36 H 0.15 4.05 7.61 -2.91 -0.02 4.03 16 37 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 39 H 0.01 0.75 8.08 -2.39 -0.02 0.73 16 40 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.16 3.92 7.62 -2.91 -0.02 3.90 16 43 H 0.43 0.92 9.10 -74.06 -0.67 0.24 16 Total: -1.00 -74.65 374.35 1.27 -73.38 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.36 Total: 11.81 kcal Atomic # 6 Polarization: -54.33 SS G_CDS: 4.48 Total: -49.85 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.28 Total: -72.54 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: -4.04 Total: -74.89 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 66.58 SS G_CDS: -0.27 Total: 66.31 kcal Total: -74.65 1.27 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887330158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.259 kcal (2) G-P(sol) polarization free energy of solvation -74.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds