Wall clock time and date at job start Sat Apr 11 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46762 * 2 1 4 4 C 1.46498 * 120.00551 * 269.99624 * 3 2 1 5 5 C 1.50694 * 109.47792 * 270.00906 * 4 3 2 6 6 H 1.08003 * 119.99516 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00412 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99908 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00106 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47218 * 89.99738 * 9 7 5 11 11 H 1.48505 * 109.47221 * 209.99608 * 9 7 5 12 12 H 1.48496 * 109.46995 * 329.99614 * 9 7 5 13 13 C 1.38003 * 119.99965 * 90.00733 * 3 2 1 14 14 N 1.32861 * 120.04518 * 179.97438 * 13 3 2 15 15 C 1.32840 * 119.82472 * 179.97438 * 14 13 3 16 16 N 1.37994 * 120.04551 * 179.97438 * 15 14 13 17 17 N 1.33124 * 119.91372 * 359.97438 * 15 14 13 18 18 C 1.32141 * 120.08552 * 0.02562 * 17 15 14 19 19 C 1.50697 * 119.91256 * 179.97438 * 18 17 15 20 20 F 1.39900 * 109.47126 * 239.99946 * 19 18 17 21 21 F 1.39895 * 109.47486 * 119.99642 * 19 18 17 22 22 C 1.53006 * 109.47239 * 359.97438 * 19 18 17 23 23 F 1.39900 * 109.46764 * 60.00143 * 22 19 18 24 24 F 1.39897 * 109.47129 * 180.02562 * 22 19 18 25 25 F 1.39903 * 109.46814 * 300.00614 * 22 19 18 26 26 N 1.32167 * 120.17640 * 0.25271 * 18 17 15 27 27 H 1.09001 * 109.47119 * 299.99764 * 1 2 3 28 28 H 1.09000 * 109.47342 * 59.99398 * 1 2 3 29 29 H 1.08999 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46784 * 240.00641 * 2 1 3 31 31 H 1.08992 * 109.47110 * 120.00386 * 2 1 3 32 32 H 1.09011 * 109.46833 * 30.00819 * 4 3 2 33 33 H 1.08996 * 109.47339 * 149.99839 * 4 3 2 34 34 H 0.97004 * 120.00229 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00150 * 180.02562 * 16 15 14 36 36 H 0.97002 * 120.00135 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3427 1.2309 -1.0958 7 6 4.1490 2.3899 -2.8779 8 7 3.3487 3.1252 -3.6184 9 14 5.9134 2.0969 -3.4169 10 1 5.9774 0.8756 -4.2592 11 1 6.3919 3.2642 -4.2004 12 1 6.7734 1.9182 -2.2196 13 6 2.2483 2.0318 1.1951 14 7 2.6916 3.2842 1.1962 15 6 2.9111 3.9064 2.3492 16 7 3.3720 5.2071 2.3556 17 7 2.6859 3.2735 3.4985 18 6 2.2451 2.0278 3.4934 19 6 1.9920 1.3148 4.7967 20 9 2.8004 0.1754 4.8695 21 9 0.6468 0.9376 4.8684 22 6 2.3228 2.2496 5.9620 23 9 1.5148 3.3893 5.8894 24 9 2.0884 1.5875 7.1719 25 9 3.6682 2.6264 5.8900 26 7 2.0307 1.4036 2.3483 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6879 -2.0284 33 1 2.0954 3.1411 -1.1383 34 1 3.6745 3.5152 -4.4447 35 1 3.5325 5.6607 3.1979 36 1 3.5356 5.6678 1.5178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892786711.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:39 Heat of formation + Delta-G solvation = -167.048708 kcal Electronic energy + Delta-G solvation = -31270.583271 eV Core-core repulsion = 26046.800537 eV Total energy + Delta-G solvation = -5223.782734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -51.80540 -50.48728 -49.37694 -48.98054 -48.42464 -42.67039 -38.77704 -36.83376 -35.11566 -34.61874 -32.79012 -31.85771 -31.15881 -29.04970 -26.64074 -25.29347 -24.94563 -23.81183 -22.31665 -20.79660 -20.31905 -20.28437 -19.56051 -19.06991 -18.66589 -18.55238 -17.85720 -17.20686 -16.90056 -16.80114 -16.44156 -16.24031 -15.75335 -15.69551 -15.67774 -15.57609 -15.30314 -15.28878 -15.15151 -15.02356 -14.96134 -14.87803 -14.57746 -14.41397 -13.91873 -13.43446 -13.14700 -13.11573 -12.91800 -12.74016 -12.55741 -12.47428 -12.21772 -11.88122 -11.62817 -10.92594 -10.65660 -10.51663 -10.03653 -9.23108 -8.19940 -6.34021 -0.37974 0.22779 0.40279 1.21344 1.38679 1.40065 1.49486 1.66875 1.85755 1.96405 2.25702 2.35485 2.41888 2.75515 2.97915 3.09789 3.23561 3.30229 3.44856 4.09557 4.36201 4.47991 4.57483 4.86608 4.95660 5.00046 5.17533 5.22233 5.32620 5.43532 5.63954 5.90905 6.04142 6.11327 6.36191 6.58768 6.76427 7.33004 7.42181 8.85419 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.003788 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.538838 B = 7389.416785 C = 8093.477276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.118 3.882 3 N -0.546 5.546 4 C 0.273 3.727 5 C -0.536 4.536 6 H 0.044 0.956 7 C 0.022 3.978 8 N -0.920 5.920 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.621 3.379 14 N -0.642 5.642 15 C 0.625 3.375 16 N -0.778 5.778 17 N -0.620 5.620 18 C 0.348 3.652 19 C 0.354 3.646 20 F -0.144 7.144 21 F -0.142 7.142 22 C 0.461 3.539 23 F -0.144 7.144 24 F -0.154 7.154 25 F -0.146 7.146 26 N -0.609 5.609 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.268 0.732 35 H 0.431 0.569 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 -0.697 17.247 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.004 4.004 3 N -0.257 5.257 4 C 0.153 3.847 5 C -0.574 4.574 6 H 0.062 0.938 7 C -0.178 4.178 8 N -0.560 5.560 9 Si 0.785 3.215 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.258 3.742 14 N -0.383 5.383 15 C 0.258 3.742 16 N -0.330 5.330 17 N -0.359 5.359 18 C 0.062 3.938 19 C 0.313 3.687 20 F -0.124 7.124 21 F -0.122 7.122 22 C 0.404 3.596 23 F -0.126 7.126 24 F -0.135 7.135 25 F -0.127 7.127 26 N -0.345 5.345 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.265 0.735 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.362 -0.693 16.762 17.110 hybrid contribution 0.989 0.343 -0.515 1.166 sum -2.374 -0.350 16.247 16.423 Atomic orbital electron populations 1.22029 0.94309 1.03425 1.01143 1.21649 0.95376 0.79962 1.03453 1.47060 1.62532 1.14012 1.02139 1.18989 0.95421 0.92505 0.77792 1.21507 0.97404 1.32019 1.06518 0.93760 1.25598 1.01496 0.94479 0.96221 1.70013 1.37336 1.33948 1.14659 0.85546 0.79873 0.78085 0.78025 1.19552 1.20399 1.20373 1.19085 0.84321 0.84532 0.86289 1.68272 1.29011 1.11501 1.29502 1.19187 0.84135 0.88137 0.82774 1.41621 1.69422 1.07788 1.14130 1.68048 1.27569 1.10015 1.30247 1.22169 0.90778 0.88230 0.92596 1.19475 0.76284 0.82966 0.89983 1.93208 1.72085 1.50630 1.96487 1.93205 1.30879 1.91643 1.96493 1.19832 0.76835 0.80632 0.82255 1.93296 1.72493 1.50766 1.96000 1.93302 1.94178 1.80203 1.45798 1.93299 1.31923 1.91479 1.96008 1.68108 1.30041 1.39071 0.97286 0.93645 0.93314 0.88688 0.89752 0.89716 0.95373 0.95576 0.92338 0.73489 0.74002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 10.24 71.98 0.74 -3.62 16 2 C 0.12 4.07 6.15 86.38 0.53 4.60 16 3 N -0.55 -23.34 2.54 -714.75 -1.82 -25.16 16 4 C 0.27 13.63 5.18 85.63 0.44 14.07 16 5 C -0.54 -28.87 9.39 25.60 0.24 -28.63 16 6 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 7 C 0.02 1.19 5.46 84.65 0.46 1.65 16 8 N -0.92 -51.61 13.29 21.45 0.28 -51.33 16 9 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.62 26.23 8.19 261.25 2.14 28.37 16 14 N -0.64 -26.96 9.29 -200.59 -1.86 -28.82 16 15 C 0.63 21.49 8.76 261.25 2.29 23.77 16 16 N -0.78 -18.90 9.05 -59.46 -0.54 -19.43 16 17 N -0.62 -20.21 7.93 -190.35 -1.51 -21.72 16 18 C 0.35 11.77 6.79 138.53 0.94 12.71 16 19 C 0.35 9.87 1.82 29.85 0.05 9.93 16 20 F -0.14 -3.97 17.01 44.97 0.76 -3.20 16 21 F -0.14 -3.80 17.01 44.97 0.76 -3.03 16 22 C 0.46 11.15 2.37 71.98 0.17 11.32 16 23 F -0.14 -3.50 16.25 44.97 0.73 -2.77 16 24 F -0.15 -3.28 17.28 44.97 0.78 -2.51 16 25 F -0.15 -3.64 16.25 44.97 0.73 -2.91 16 26 N -0.61 -23.10 9.18 -190.35 -1.75 -24.84 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 31 H 0.08 2.82 7.36 -2.39 -0.02 2.80 16 32 H 0.03 1.45 8.07 -2.38 -0.02 1.43 16 33 H 0.03 1.43 7.37 -2.39 -0.02 1.42 16 34 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.43 7.58 8.95 -92.71 -0.83 6.75 16 36 H 0.43 9.71 8.95 -92.71 -0.83 8.89 16 Total: -1.00 -62.03 339.59 6.15 -55.89 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.46 Total: 10.86 kcal Atomic # 6 Polarization: 66.17 SS G_CDS: 8.01 Total: 74.18 kcal Atomic # 7 Polarization: -164.11 SS G_CDS: -7.19 Total: -171.30 kcal Atomic # 9 Polarization: -18.19 SS G_CDS: 3.77 Total: -14.42 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -62.03 6.15 -55.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892786711.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.160 kcal (2) G-P(sol) polarization free energy of solvation -62.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds