Wall clock time and date at job start Sat Apr 11 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47118 * 2 1 4 4 C 1.46503 * 120.00630 * 79.08486 * 3 2 1 5 5 H 1.09005 * 109.46454 * 351.97226 * 4 3 2 6 6 C 1.52999 * 109.46956 * 231.98124 * 4 3 2 7 7 C 1.50700 * 109.47506 * 111.97548 * 4 3 2 8 8 O 1.20830 * 119.99868 * 357.79153 * 7 4 3 9 9 O 1.34221 * 119.99766 * 177.79556 * 7 4 3 10 10 S 1.65600 * 119.99587 * 259.07971 * 3 2 1 11 11 O 1.42108 * 104.27854 * 206.07307 * 10 3 2 12 12 O 1.42096 * 104.27810 * 333.92735 * 10 3 2 13 13 C 1.81399 * 104.45035 * 90.00369 * 10 3 2 14 14 C 1.50703 * 109.47266 * 179.97438 * 13 10 3 15 15 C 1.38633 * 119.74606 * 269.72813 * 14 13 10 16 16 C 1.37619 * 120.24325 * 179.72566 * 15 14 13 17 17 C 1.40714 * 119.74881 * 0.56375 * 16 15 14 18 18 C 1.41393 * 120.24704 * 179.68465 * 17 16 15 19 19 H 1.08004 * 119.99612 * 157.07241 * 18 17 16 20 20 C 1.39945 * 120.00171 * 337.07131 * 18 17 16 21 21 N 1.30825 * 119.99885 * 331.49089 * 20 18 17 22 22 Si 1.86802 * 119.99932 * 151.48494 * 20 18 17 23 23 H 1.48499 * 109.46820 * 94.99376 * 22 20 18 24 24 H 1.48497 * 109.47007 * 214.99173 * 22 20 18 25 25 H 1.48499 * 109.47179 * 334.99013 * 22 20 18 26 26 C 1.40714 * 119.50774 * 359.70742 * 17 16 15 27 27 C 1.37618 * 119.74858 * 359.97438 * 26 17 16 28 28 H 1.09003 * 109.47405 * 175.55180 * 1 2 3 29 29 H 1.09000 * 109.47088 * 295.55316 * 1 2 3 30 30 H 1.09001 * 109.46860 * 55.54782 * 1 2 3 31 31 H 1.09007 * 109.47013 * 119.99690 * 2 1 3 32 32 H 1.08992 * 109.47512 * 239.99287 * 2 1 3 33 33 H 1.09000 * 109.47763 * 59.99444 * 6 4 3 34 34 H 1.08997 * 109.46923 * 179.97438 * 6 4 3 35 35 H 1.09005 * 109.46805 * 299.98887 * 6 4 3 36 36 H 0.96701 * 116.99867 * 179.97438 * 9 7 4 37 37 H 1.09004 * 109.47088 * 299.99793 * 13 10 3 38 38 H 1.08999 * 109.47174 * 59.99753 * 13 10 3 39 39 H 1.07995 * 119.88060 * 359.97231 * 15 14 13 40 40 H 1.08010 * 120.12666 * 180.27642 * 16 15 14 41 41 H 0.96997 * 119.99701 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.13136 * 179.97438 * 26 17 16 43 43 H 1.07997 * 119.87799 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0360 2.1520 1.2457 5 1 1.5229 1.5913 2.0271 6 6 1.3259 3.4896 1.0279 7 6 3.4628 2.4024 1.6613 8 8 4.3712 1.9464 1.0081 9 8 3.7243 3.1319 2.7572 10 16 2.5504 2.0712 -1.4082 11 8 3.4700 3.0682 -0.9844 12 8 2.9767 0.9700 -2.1988 13 6 1.0697 2.8348 -2.1259 14 6 1.4301 3.5040 -3.4272 15 6 1.8290 4.8317 -3.4305 16 6 2.1658 5.4513 -4.6122 17 6 2.0928 4.7355 -5.8215 18 6 2.4300 5.3637 -7.0425 19 1 2.7335 4.7677 -7.8905 20 6 2.3704 6.7576 -7.1522 21 7 1.5285 7.4362 -6.4158 22 14 3.4930 7.6491 -8.3498 23 1 2.7740 7.8720 -9.6298 24 1 3.8935 8.9574 -7.7726 25 1 4.7040 6.8265 -8.5990 26 6 1.6812 3.3900 -5.8066 27 6 1.3554 2.7887 -4.6124 28 1 -0.3634 -1.0246 -0.0797 29 1 -0.3633 0.4433 0.9271 30 1 -0.3633 0.5814 -0.8474 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8898 33 1 0.2940 3.3085 0.7273 34 1 1.3387 4.0629 1.9548 35 1 1.8390 4.0503 0.2465 36 1 4.6548 3.2652 2.9841 37 1 0.3171 2.0676 -2.3077 38 1 0.6721 3.5771 -1.4339 39 1 1.8794 5.3807 -2.5018 40 1 2.4806 6.4846 -4.6121 41 1 1.4870 8.4023 -6.4921 42 1 1.6211 2.8312 -6.7289 43 1 1.0389 1.7563 -4.5986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899567731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:57 Heat of formation + Delta-G solvation = -143.635478 kcal Electronic energy + Delta-G solvation = -28535.492123 eV Core-core repulsion = 24479.669383 eV Total energy + Delta-G solvation = -4055.822740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36712 -37.78319 -37.23894 -36.71722 -35.90642 -35.33409 -34.20539 -32.53218 -31.57962 -29.46010 -29.01757 -27.92317 -25.25128 -24.17650 -22.91058 -21.69172 -21.19135 -20.21328 -18.60980 -18.17166 -17.54083 -17.46250 -16.57486 -16.17929 -15.76105 -15.55121 -15.40515 -14.62950 -14.54353 -14.12227 -13.95901 -13.85826 -13.70748 -13.46377 -12.83864 -12.68295 -12.52837 -12.39510 -12.30193 -12.09668 -11.88193 -11.78896 -11.68555 -11.59348 -11.46311 -11.33356 -11.25390 -11.15890 -10.91897 -10.78156 -10.74882 -10.56046 -10.23369 -9.85787 -9.55290 -9.31383 -9.11758 -7.62665 -7.51963 -7.04193 -4.48091 0.56535 2.25928 2.62009 2.68919 2.94743 2.99319 3.01779 3.09077 3.13239 3.80267 4.30268 4.40284 4.42623 4.43678 4.67289 4.81707 4.97088 5.07811 5.13254 5.19723 5.30126 5.37463 5.50609 5.51745 5.54659 5.64767 5.85525 5.92211 6.03739 6.10690 6.19690 6.23566 6.45218 6.52550 6.81614 6.88239 7.05721 7.15008 7.44000 7.66127 7.86455 7.88861 7.91510 8.10112 8.43767 8.68804 8.78843 9.90703 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003151 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.224357 B = 8883.059744 C = 9505.412395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 N -0.992 5.992 4 C 0.173 3.827 5 H 0.126 0.874 6 C -0.190 4.190 7 C 0.461 3.539 8 O -0.485 6.485 9 O -0.519 6.519 10 S 2.572 3.428 11 O -0.948 6.948 12 O -0.958 6.958 13 C -0.523 4.523 14 C -0.243 4.243 15 C -0.074 4.074 16 C -0.176 4.176 17 C 0.121 3.879 18 C -0.452 4.452 19 H 0.086 0.914 20 C 0.083 3.917 21 N -0.765 5.765 22 Si 0.903 3.097 23 H -0.268 1.268 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.228 4.228 27 C -0.064 4.064 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.409 0.591 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.286 0.714 42 H 0.099 0.901 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -7.246 15.943 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.826 5.826 4 C 0.064 3.936 5 H 0.144 0.856 6 C -0.248 4.248 7 C 0.299 3.701 8 O -0.370 6.370 9 O -0.331 6.331 10 S 2.673 3.327 11 O -0.938 6.938 12 O -0.949 6.949 13 C -0.653 4.653 14 C -0.249 4.249 15 C -0.094 4.094 16 C -0.195 4.195 17 C 0.117 3.883 18 C -0.480 4.480 19 H 0.104 0.896 20 C -0.140 4.140 21 N -0.388 5.388 22 Si 0.727 3.273 23 H -0.193 1.193 24 H -0.197 1.197 25 H -0.179 1.179 26 C -0.248 4.248 27 C -0.083 4.083 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.268 0.732 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.486 -7.331 15.517 17.512 hybrid contribution 0.358 0.699 -0.228 0.818 sum -3.128 -6.632 15.289 16.956 Atomic orbital electron populations 1.22306 0.95860 1.02668 1.02646 1.21408 0.94102 0.81513 1.04665 1.58038 1.80955 1.21951 1.21615 1.20055 0.89287 0.95145 0.89093 0.85603 1.22558 1.01470 0.95018 1.05726 1.23859 0.93296 0.75199 0.77753 1.90748 1.47307 1.47178 1.51762 1.84454 1.35985 1.67956 1.44705 1.07101 0.78024 0.74767 0.72811 1.93531 1.59642 1.60935 1.79716 1.93489 1.80268 1.52327 1.68790 1.29163 1.17889 1.10924 1.07356 1.18047 1.20633 0.95792 0.90410 1.20528 0.98422 0.93091 0.97323 1.21098 1.06953 1.00158 0.91323 1.17675 0.86448 0.91069 0.93065 1.19716 1.38677 0.91393 0.98236 0.89612 1.26019 0.93697 0.98168 0.96101 1.69881 1.25660 1.09576 1.33670 0.86371 0.81590 0.79059 0.80325 1.19303 1.19704 1.17940 1.20942 1.10947 0.96928 0.95981 1.20474 0.98190 0.97189 0.92485 0.91201 0.92121 0.92066 0.90609 0.88223 0.89721 0.88801 0.90195 0.73216 0.86239 0.86014 0.88814 0.87005 0.90284 0.88289 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 10.17 37.16 0.38 -0.97 16 2 C 0.11 1.13 6.31 -4.05 -0.03 1.10 16 3 N -0.99 -13.07 2.28 -108.53 -0.25 -13.32 16 4 C 0.17 1.89 3.14 -69.08 -0.22 1.67 16 5 H 0.13 0.87 7.94 -51.93 -0.41 0.46 16 6 C -0.19 -1.85 7.87 37.16 0.29 -1.56 16 7 C 0.46 6.27 6.76 36.01 0.24 6.51 16 8 O -0.49 -8.83 15.07 -26.23 -0.40 -9.23 16 9 O -0.52 -5.20 13.26 -39.23 -0.52 -5.72 16 10 S 2.57 47.09 4.38 -107.50 -0.47 46.61 16 11 O -0.95 -20.15 13.28 -66.54 -0.88 -21.03 16 12 O -0.96 -20.55 16.50 -57.54 -0.95 -21.50 16 13 C -0.52 -8.72 6.01 36.01 0.22 -8.50 16 14 C -0.24 -5.33 5.16 -104.33 -0.54 -5.87 16 15 C -0.07 -1.73 9.67 -39.66 -0.38 -2.12 16 16 C -0.18 -4.53 8.76 -38.87 -0.34 -4.87 16 17 C 0.12 3.19 5.56 -106.83 -0.59 2.59 16 18 C -0.45 -11.66 8.98 -37.74 -0.34 -12.00 16 19 H 0.09 2.11 7.99 -52.48 -0.42 1.69 16 20 C 0.08 1.99 4.88 -17.34 -0.08 1.91 16 21 N -0.77 -18.89 11.57 55.55 0.64 -18.24 16 22 Si 0.90 17.85 29.64 -169.99 -5.04 12.81 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 25 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 26 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 27 C -0.06 -1.45 9.67 -39.66 -0.38 -1.83 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.50 7.36 -51.93 -0.38 0.12 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.20 6.75 -51.93 -0.35 0.85 16 33 H 0.08 0.63 7.80 -51.93 -0.41 0.22 16 34 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.08 1.00 5.51 -51.93 -0.29 0.71 16 36 H 0.41 2.66 9.10 45.56 0.41 3.07 16 37 H 0.12 1.66 7.30 -51.92 -0.38 1.28 16 38 H 0.12 1.69 6.07 -51.92 -0.31 1.38 16 39 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.11 2.91 6.46 -52.48 -0.34 2.57 16 41 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -35.19 367.28 -9.45 -44.64 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.96 Total: 9.37 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: -2.16 Total: -29.91 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.39 Total: -31.56 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -2.75 Total: -57.49 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.04 Total: 12.81 kcal Atomic # 16 Polarization: 47.09 SS G_CDS: -0.47 Total: 46.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.19 -9.45 -44.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899567731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.000 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds