Wall clock time and date at job start Sat Apr 11 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47232 * 2 1 4 4 C 1.46501 * 119.99471 * 83.04420 * 3 2 1 5 5 H 1.09000 * 109.47015 * 184.38369 * 4 3 2 6 6 C 1.53002 * 109.47495 * 304.39013 * 4 3 2 7 7 C 1.50703 * 109.47145 * 64.39141 * 4 3 2 8 8 O 1.20824 * 119.99995 * 359.97438 * 7 4 3 9 9 O 1.34224 * 119.99971 * 180.02562 * 7 4 3 10 10 S 1.65601 * 120.00482 * 263.04471 * 3 2 1 11 11 O 1.42102 * 104.27181 * 26.07204 * 10 3 2 12 12 O 1.42094 * 104.27519 * 153.92679 * 10 3 2 13 13 C 1.81394 * 104.44916 * 270.00166 * 10 3 2 14 14 C 1.50698 * 109.47415 * 180.02562 * 13 10 3 15 15 C 1.38634 * 119.74538 * 269.72947 * 14 13 10 16 16 C 1.37622 * 120.24603 * 179.71531 * 15 14 13 17 17 C 1.40718 * 119.74372 * 0.57173 * 16 15 14 18 18 C 1.41393 * 120.24675 * 179.67798 * 17 16 15 19 19 H 1.07997 * 120.00222 * 158.94370 * 18 17 16 20 20 C 1.39946 * 120.00081 * 338.94532 * 18 17 16 21 21 N 1.30825 * 119.99883 * 329.67784 * 20 18 17 22 22 Si 1.86799 * 120.00442 * 149.67297 * 20 18 17 23 23 H 1.48498 * 109.47005 * 94.98630 * 22 20 18 24 24 H 1.48501 * 109.47252 * 214.98711 * 22 20 18 25 25 H 1.48501 * 109.46799 * 334.98743 * 22 20 18 26 26 C 1.40710 * 119.51114 * 359.70210 * 17 16 15 27 27 C 1.37621 * 119.74761 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.46886 * 293.50213 * 1 2 3 29 29 H 1.09001 * 109.47599 * 53.49944 * 1 2 3 30 30 H 1.09001 * 109.47334 * 173.50351 * 1 2 3 31 31 H 1.09006 * 109.46440 * 240.00570 * 2 1 3 32 32 H 1.08991 * 109.47495 * 120.00760 * 2 1 3 33 33 H 1.09000 * 109.46324 * 308.10131 * 6 4 3 34 34 H 1.08995 * 109.46865 * 68.09898 * 6 4 3 35 35 H 1.08994 * 109.47199 * 188.10415 * 6 4 3 36 36 H 0.96700 * 116.99776 * 179.97438 * 9 7 4 37 37 H 1.09004 * 109.47398 * 299.99716 * 13 10 3 38 38 H 1.09003 * 109.47677 * 59.99755 * 13 10 3 39 39 H 1.07997 * 119.88234 * 359.97438 * 15 14 13 40 40 H 1.08001 * 120.13000 * 180.27151 * 16 15 14 41 41 H 0.97002 * 120.00406 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.13166 * 179.97438 * 26 17 16 43 43 H 1.08003 * 119.87724 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1176 2.1229 1.2595 5 1 2.4231 3.1489 1.0538 6 6 0.7565 2.1262 1.9582 7 6 3.1384 1.4642 2.1512 8 8 3.7227 0.4763 1.7737 9 8 3.3978 1.9745 3.3653 10 16 2.4581 2.1041 -1.4235 11 8 1.6983 1.4223 -2.4120 12 8 2.2712 3.4922 -1.1840 13 6 4.2222 1.7204 -1.5999 14 6 4.7446 2.3325 -2.8740 15 6 4.7094 1.6031 -4.0524 16 6 5.1783 2.1541 -5.2231 17 6 5.7059 3.4586 -5.2184 18 6 6.1968 4.0327 -6.4137 19 1 6.2810 5.1057 -6.5026 20 6 6.5735 3.2104 -7.4816 21 7 7.0422 2.0111 -7.2501 22 14 6.4070 3.8250 -9.2377 23 1 7.7011 4.3993 -9.6859 24 1 6.0337 2.6941 -10.1248 25 1 5.3540 4.8704 -9.2985 26 6 5.7418 4.1875 -4.0153 27 6 5.2622 3.6185 -2.8577 28 1 -0.3633 0.4098 0.9424 29 1 -0.3634 0.6113 -0.8261 30 1 -0.3634 -1.0211 -0.1163 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 -0.0085 2.4696 1.2616 34 1 0.5171 1.1167 2.2921 35 1 0.7912 2.7948 2.8182 36 1 4.0601 1.5172 3.9013 37 1 4.7696 2.1285 -0.7502 38 1 4.3574 0.6393 -1.6337 39 1 4.3087 0.6002 -4.0527 40 1 5.1459 1.5858 -6.1409 41 1 7.3037 1.4413 -7.9902 42 1 6.1449 5.1893 -4.0002 43 1 5.2891 4.1759 -1.9330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899567732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:00 Heat of formation + Delta-G solvation = -144.565045 kcal Electronic energy + Delta-G solvation = -28153.727960 eV Core-core repulsion = 24097.864910 eV Total energy + Delta-G solvation = -4055.863050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.66511 -37.78022 -37.40149 -36.78244 -36.14453 -35.47725 -34.21345 -32.01621 -31.55842 -29.73149 -29.44925 -27.85628 -25.07148 -24.21799 -23.13433 -21.41439 -21.18656 -20.30957 -18.81156 -18.28345 -17.63797 -17.47293 -16.95385 -16.16098 -15.89337 -15.68119 -15.41948 -14.81764 -14.51683 -14.04153 -13.90592 -13.84325 -13.73751 -13.40143 -12.87225 -12.71960 -12.64365 -12.24239 -12.18299 -12.09228 -12.01177 -11.80151 -11.75046 -11.66012 -11.65112 -11.62871 -11.23890 -11.17391 -10.87989 -10.81471 -10.78157 -10.66983 -10.26504 -9.87179 -9.55612 -9.30641 -9.09539 -7.62532 -7.53835 -7.06436 -4.47874 0.50648 1.93162 2.52532 2.63325 2.95224 2.98458 2.99418 3.01136 3.13175 3.79029 4.17835 4.33732 4.39752 4.41747 4.73420 4.77536 4.93154 5.12914 5.23616 5.27330 5.37517 5.39734 5.42729 5.51645 5.64594 5.72653 5.82709 6.03740 6.11589 6.19412 6.20737 6.24427 6.25181 6.45245 6.81848 6.87088 7.06517 7.15452 7.43894 7.63253 7.66801 7.86667 7.89764 8.09548 8.43301 8.68150 8.78971 9.87917 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022832 B = 0.002835 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.063122 B = 9875.034353 C =10247.453466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 N -0.988 5.988 4 C 0.157 3.843 5 H 0.140 0.860 6 C -0.153 4.153 7 C 0.464 3.536 8 O -0.501 6.501 9 O -0.515 6.515 10 S 2.567 3.433 11 O -0.951 6.951 12 O -0.961 6.961 13 C -0.512 4.512 14 C -0.246 4.246 15 C -0.073 4.073 16 C -0.179 4.179 17 C 0.120 3.880 18 C -0.451 4.451 19 H 0.086 0.914 20 C 0.083 3.917 21 N -0.761 5.761 22 Si 0.903 3.097 23 H -0.268 1.268 24 H -0.272 1.272 25 H -0.255 1.255 26 C -0.230 4.230 27 C -0.063 4.063 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.409 0.591 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.287 0.713 42 H 0.099 0.901 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -3.411 16.335 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.005 4.005 3 N -0.822 5.822 4 C 0.047 3.953 5 H 0.157 0.843 6 C -0.211 4.211 7 C 0.303 3.697 8 O -0.387 6.387 9 O -0.326 6.326 10 S 2.669 3.331 11 O -0.941 6.941 12 O -0.952 6.952 13 C -0.643 4.643 14 C -0.252 4.252 15 C -0.092 4.092 16 C -0.199 4.199 17 C 0.117 3.883 18 C -0.479 4.479 19 H 0.104 0.896 20 C -0.140 4.140 21 N -0.383 5.383 22 Si 0.726 3.274 23 H -0.193 1.193 24 H -0.197 1.197 25 H -0.179 1.179 26 C -0.250 4.250 27 C -0.082 4.082 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.268 0.732 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.914 -3.272 15.432 18.119 hybrid contribution 1.188 -0.621 -0.112 1.345 sum -7.726 -3.893 15.319 17.593 Atomic orbital electron populations 1.22458 0.95964 1.02497 1.02890 1.21230 0.94407 0.81169 1.03697 1.58070 1.79579 1.23886 1.20638 1.20328 0.94332 0.96854 0.83735 0.84271 1.22207 0.94451 1.03265 1.01199 1.24225 0.82159 0.82697 0.80626 1.90721 1.48983 1.25341 1.73679 1.84538 1.60233 1.58902 1.28923 1.07263 0.79121 0.74259 0.72441 1.93536 1.68510 1.74989 1.57060 1.93506 1.86114 1.31636 1.83917 1.28884 1.20973 1.09530 1.04914 1.18065 1.18545 0.97252 0.91351 1.20551 0.98502 0.97434 0.92756 1.21102 1.04504 0.97472 0.96774 1.17668 0.87591 0.91331 0.91746 1.19720 1.36207 0.95080 0.96858 0.89568 1.26046 0.91527 0.94207 1.02228 1.69898 1.24293 1.08742 1.35369 0.86378 0.80011 0.80137 0.80860 1.19289 1.19677 1.17885 1.20911 1.10724 1.00767 0.92562 1.20460 0.96885 0.93688 0.97184 0.91874 0.91590 0.91763 0.89671 0.90241 0.90016 0.91343 0.90209 0.73151 0.86594 0.85935 0.88736 0.86962 0.90209 0.88315 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.64 37.16 0.36 -1.47 16 2 C 0.12 1.40 5.22 -4.04 -0.02 1.37 16 3 N -0.99 -12.94 2.41 -108.53 -0.26 -13.20 16 4 C 0.16 1.70 3.13 -69.08 -0.22 1.48 16 5 H 0.14 1.51 6.80 -51.93 -0.35 1.16 16 6 C -0.15 -1.24 7.63 37.16 0.28 -0.96 16 7 C 0.46 4.85 7.41 36.01 0.27 5.12 16 8 O -0.50 -6.52 15.51 -18.75 -0.29 -6.81 16 9 O -0.51 -3.87 13.35 -39.24 -0.52 -4.40 16 10 S 2.57 44.44 5.35 -107.50 -0.58 43.87 16 11 O -0.95 -18.96 16.95 -57.54 -0.98 -19.93 16 12 O -0.96 -18.53 16.53 -57.54 -0.95 -19.48 16 13 C -0.51 -9.03 6.29 36.00 0.23 -8.80 16 14 C -0.25 -5.49 5.16 -104.33 -0.54 -6.03 16 15 C -0.07 -1.73 9.67 -39.66 -0.38 -2.12 16 16 C -0.18 -4.63 8.78 -38.87 -0.34 -4.97 16 17 C 0.12 3.16 5.58 -106.83 -0.60 2.57 16 18 C -0.45 -11.58 8.98 -37.74 -0.34 -11.92 16 19 H 0.09 2.11 8.00 -52.49 -0.42 1.69 16 20 C 0.08 2.00 4.85 -17.34 -0.08 1.91 16 21 N -0.76 -18.81 11.57 55.55 0.64 -18.17 16 22 Si 0.90 17.73 29.65 -169.99 -5.04 12.69 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 26 C -0.23 -5.63 9.80 -38.87 -0.38 -6.02 16 27 C -0.06 -1.43 9.67 -39.66 -0.38 -1.81 16 28 H 0.06 0.53 5.02 -51.93 -0.26 0.27 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.03 7.54 -51.93 -0.39 0.64 16 32 H 0.08 0.85 6.51 -51.93 -0.34 0.51 16 33 H 0.08 0.69 7.78 -51.93 -0.40 0.28 16 34 H 0.07 0.49 6.45 -51.93 -0.33 0.16 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.41 1.45 9.10 45.56 0.41 1.87 16 37 H 0.12 1.81 8.08 -51.92 -0.42 1.39 16 38 H 0.12 1.96 8.08 -51.92 -0.42 1.54 16 39 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.11 2.93 6.39 -52.49 -0.34 2.60 16 41 H 0.29 6.34 8.30 -40.82 -0.34 6.01 16 42 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -32.62 371.09 -9.46 -42.08 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.93 Total: 9.38 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: -2.15 Total: -31.63 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.38 Total: -31.36 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -2.74 Total: -50.62 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.04 Total: 12.69 kcal Atomic # 16 Polarization: 44.44 SS G_CDS: -0.58 Total: 43.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.62 -9.46 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899567732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.481 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds