Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47232 * 2 1 4 4 C 1.46501 * 119.99471 * 83.04420 * 3 2 1 5 5 H 1.09000 * 109.47015 * 184.38369 * 4 3 2 6 6 C 1.53002 * 109.47495 * 304.39013 * 4 3 2 7 7 C 1.50703 * 109.47145 * 64.39141 * 4 3 2 8 8 O 1.20824 * 119.99995 * 359.97438 * 7 4 3 9 9 O 1.34224 * 119.99971 * 180.02562 * 7 4 3 10 10 S 1.65601 * 120.00482 * 263.04471 * 3 2 1 11 11 O 1.42102 * 104.27181 * 26.07204 * 10 3 2 12 12 O 1.42094 * 104.27519 * 153.92679 * 10 3 2 13 13 C 1.81394 * 104.44916 * 270.00166 * 10 3 2 14 14 C 1.50698 * 109.47415 * 180.02562 * 13 10 3 15 15 C 1.38634 * 119.74538 * 269.72947 * 14 13 10 16 16 C 1.37622 * 120.24603 * 179.71531 * 15 14 13 17 17 C 1.40718 * 119.74372 * 0.57173 * 16 15 14 18 18 C 1.41393 * 120.24675 * 179.67798 * 17 16 15 19 19 H 1.07997 * 120.00222 * 158.94370 * 18 17 16 20 20 C 1.39946 * 120.00081 * 338.94532 * 18 17 16 21 21 N 1.30825 * 119.99883 * 329.67784 * 20 18 17 22 22 Si 1.86799 * 120.00442 * 149.67297 * 20 18 17 23 23 H 1.48498 * 109.47005 * 94.98630 * 22 20 18 24 24 H 1.48501 * 109.47252 * 214.98711 * 22 20 18 25 25 H 1.48501 * 109.46799 * 334.98743 * 22 20 18 26 26 C 1.40710 * 119.51114 * 359.70210 * 17 16 15 27 27 C 1.37621 * 119.74761 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.46886 * 293.50213 * 1 2 3 29 29 H 1.09001 * 109.47599 * 53.49944 * 1 2 3 30 30 H 1.09001 * 109.47334 * 173.50351 * 1 2 3 31 31 H 1.09006 * 109.46440 * 240.00570 * 2 1 3 32 32 H 1.08991 * 109.47495 * 120.00760 * 2 1 3 33 33 H 1.09000 * 109.46324 * 308.10131 * 6 4 3 34 34 H 1.08995 * 109.46865 * 68.09898 * 6 4 3 35 35 H 1.08994 * 109.47199 * 188.10415 * 6 4 3 36 36 H 0.96700 * 116.99776 * 179.97438 * 9 7 4 37 37 H 1.09004 * 109.47398 * 299.99716 * 13 10 3 38 38 H 1.09003 * 109.47677 * 59.99755 * 13 10 3 39 39 H 1.07997 * 119.88234 * 359.97438 * 15 14 13 40 40 H 1.08001 * 120.13000 * 180.27151 * 16 15 14 41 41 H 0.97002 * 120.00406 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.13166 * 179.97438 * 26 17 16 43 43 H 1.08003 * 119.87724 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1176 2.1229 1.2595 5 1 2.4231 3.1489 1.0538 6 6 0.7565 2.1262 1.9582 7 6 3.1384 1.4642 2.1512 8 8 3.7227 0.4763 1.7737 9 8 3.3978 1.9745 3.3653 10 16 2.4581 2.1041 -1.4235 11 8 1.6983 1.4223 -2.4120 12 8 2.2712 3.4922 -1.1840 13 6 4.2222 1.7204 -1.5999 14 6 4.7446 2.3325 -2.8740 15 6 4.7094 1.6031 -4.0524 16 6 5.1783 2.1541 -5.2231 17 6 5.7059 3.4586 -5.2184 18 6 6.1968 4.0327 -6.4137 19 1 6.2810 5.1057 -6.5026 20 6 6.5735 3.2104 -7.4816 21 7 7.0422 2.0111 -7.2501 22 14 6.4070 3.8250 -9.2377 23 1 7.7011 4.3993 -9.6859 24 1 6.0337 2.6941 -10.1248 25 1 5.3540 4.8704 -9.2985 26 6 5.7418 4.1875 -4.0153 27 6 5.2622 3.6185 -2.8577 28 1 -0.3633 0.4098 0.9424 29 1 -0.3634 0.6113 -0.8261 30 1 -0.3634 -1.0211 -0.1163 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 -0.0085 2.4696 1.2616 34 1 0.5171 1.1167 2.2921 35 1 0.7912 2.7948 2.8182 36 1 4.0601 1.5172 3.9013 37 1 4.7696 2.1285 -0.7502 38 1 4.3574 0.6393 -1.6337 39 1 4.3087 0.6002 -4.0527 40 1 5.1459 1.5858 -6.1409 41 1 7.3037 1.4413 -7.9902 42 1 6.1449 5.1893 -4.0002 43 1 5.2891 4.1759 -1.9330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899567732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -166.662258 kcal Electronic energy + Delta-G solvation = -28154.686167 eV Core-core repulsion = 24097.864910 eV Total energy + Delta-G solvation = -4056.821257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46480 -39.60747 -38.29558 -38.25339 -37.04575 -36.85266 -36.00808 -33.29819 -32.83767 -31.32421 -30.64328 -29.56854 -25.98926 -25.81316 -24.03428 -23.06705 -22.42324 -21.97892 -19.93013 -19.34834 -19.29759 -18.68020 -17.85620 -17.56463 -17.15139 -16.98346 -16.62180 -16.18924 -16.01210 -15.70606 -15.54237 -14.83478 -14.67122 -14.41254 -14.22506 -13.94794 -13.74074 -13.64629 -13.54108 -13.45928 -13.36721 -13.18349 -13.09768 -13.04463 -12.90284 -12.82940 -12.58372 -12.55249 -12.36007 -12.16107 -11.97815 -11.68816 -11.61865 -11.45055 -11.39283 -10.94722 -10.29197 -9.51371 -9.38670 -8.85624 -6.39590 -0.87634 0.85095 1.02914 1.14374 1.35805 1.45043 1.49049 1.55261 2.12102 2.15063 2.53220 2.82581 3.07211 3.42169 3.60472 3.80849 3.86276 3.98027 4.01700 4.21771 4.37434 4.39535 4.40287 4.44810 4.60149 4.65673 4.74989 4.90391 4.92455 4.94254 5.04953 5.15555 5.17969 5.23377 5.30102 5.42106 5.49379 5.56779 5.61125 5.80487 5.97009 6.00644 6.23326 6.54714 6.79456 6.89803 6.98445 8.12830 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022832 B = 0.002835 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.063122 B = 9875.034353 C =10247.453466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.113 3.887 3 N -0.980 5.980 4 C 0.144 3.856 5 H 0.140 0.860 6 C -0.151 4.151 7 C 0.473 3.527 8 O -0.530 6.530 9 O -0.504 6.504 10 S 2.597 3.403 11 O -0.979 6.979 12 O -0.981 6.981 13 C -0.523 4.523 14 C -0.246 4.246 15 C -0.085 4.085 16 C -0.206 4.206 17 C 0.090 3.910 18 C -0.492 4.492 19 H 0.085 0.915 20 C 0.046 3.954 21 N -0.795 5.795 22 Si 0.978 3.022 23 H -0.256 1.256 24 H -0.263 1.263 25 H -0.258 1.258 26 C -0.250 4.250 27 C -0.071 4.071 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.429 0.571 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.296 0.704 42 H 0.107 0.893 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 -3.722 18.617 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.011 4.011 3 N -0.817 5.817 4 C 0.036 3.964 5 H 0.157 0.843 6 C -0.209 4.209 7 C 0.314 3.686 8 O -0.419 6.419 9 O -0.317 6.317 10 S 2.697 3.303 11 O -0.970 6.970 12 O -0.971 6.971 13 C -0.654 4.654 14 C -0.250 4.250 15 C -0.104 4.104 16 C -0.226 4.226 17 C 0.087 3.913 18 C -0.520 4.520 19 H 0.103 0.897 20 C -0.175 4.175 21 N -0.418 5.418 22 Si 0.797 3.203 23 H -0.180 1.180 24 H -0.187 1.187 25 H -0.182 1.182 26 C -0.270 4.270 27 C -0.091 4.091 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.292 0.708 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.938 -3.562 17.709 20.617 hybrid contribution 1.435 -0.604 -0.457 1.622 sum -8.503 -4.166 17.252 19.680 Atomic orbital electron populations 1.22465 0.94707 1.03350 1.03142 1.21444 0.95482 0.80093 1.04084 1.57641 1.78950 1.24674 1.20389 1.20643 0.96352 0.96455 0.82973 0.84277 1.22246 0.92433 1.04667 1.01560 1.23964 0.81479 0.82010 0.81182 1.90724 1.50046 1.26641 1.74487 1.84482 1.60747 1.58643 1.27859 1.05773 0.78130 0.73590 0.72826 1.93509 1.68851 1.75532 1.59059 1.93486 1.86124 1.32942 1.84547 1.29019 1.22323 1.10625 1.03396 1.18449 1.16972 0.96930 0.92643 1.20850 0.98276 0.98416 0.92883 1.21118 1.06333 0.97899 0.97209 1.18012 0.88488 0.91978 0.92857 1.19945 1.38443 0.95391 0.98179 0.89670 1.26879 0.90386 0.94176 1.06017 1.69911 1.24935 1.09950 1.37037 0.85270 0.80162 0.79535 0.75323 1.18016 1.18721 1.18169 1.21162 1.11541 1.01390 0.92886 1.20842 0.96212 0.94232 0.97769 0.89791 0.93749 0.90089 0.90473 0.88694 0.90305 0.90105 0.88029 0.70831 0.84178 0.84216 0.87095 0.88347 0.89280 0.87483 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 9.64 71.98 0.69 -2.51 16 2 C 0.11 2.38 5.22 86.38 0.45 2.83 16 3 N -0.98 -23.51 2.41 -497.28 -1.20 -24.71 16 4 C 0.14 2.71 3.13 44.25 0.14 2.85 16 5 H 0.14 2.65 6.80 -2.39 -0.02 2.64 16 6 C -0.15 -1.92 7.63 71.98 0.55 -1.37 16 7 C 0.47 8.39 7.41 71.24 0.53 8.92 16 8 O -0.53 -12.32 15.51 21.97 0.34 -11.98 16 9 O -0.50 -5.73 13.35 -51.36 -0.69 -6.41 16 10 S 2.60 86.53 5.35 -56.49 -0.30 86.23 16 11 O -0.98 -38.55 16.95 -127.65 -2.16 -40.71 16 12 O -0.98 -36.49 16.53 -127.65 -2.11 -38.60 16 13 C -0.52 -17.64 6.29 71.24 0.45 -17.19 16 14 C -0.25 -10.90 5.16 -19.68 -0.10 -11.00 16 15 C -0.08 -4.13 9.67 22.22 0.21 -3.91 16 16 C -0.21 -11.17 8.78 22.73 0.20 -10.97 16 17 C 0.09 4.95 5.58 -21.29 -0.12 4.83 16 18 C -0.49 -26.48 8.98 23.46 0.21 -26.27 16 19 H 0.09 4.39 8.00 -2.91 -0.02 4.36 16 20 C 0.05 2.26 4.85 85.26 0.41 2.67 16 21 N -0.80 -40.77 11.57 21.83 0.25 -40.52 16 22 Si 0.98 37.14 29.65 68.60 2.03 39.17 16 23 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 24 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 26 C -0.25 -12.65 9.80 22.73 0.22 -12.42 16 27 C -0.07 -3.25 9.67 22.22 0.21 -3.04 16 28 H 0.08 1.13 5.02 -2.39 -0.01 1.12 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.75 7.54 -2.38 -0.02 1.73 16 32 H 0.09 1.75 6.51 -2.39 -0.02 1.73 16 33 H 0.08 1.09 7.78 -2.39 -0.02 1.07 16 34 H 0.08 0.84 6.45 -2.39 -0.02 0.82 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.43 1.46 9.10 -74.06 -0.67 0.78 16 37 H 0.14 4.02 8.08 -2.39 -0.02 4.00 16 38 H 0.14 4.22 8.08 -2.39 -0.02 4.20 16 39 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 40 H 0.10 5.45 6.39 -2.91 -0.02 5.43 16 41 H 0.30 13.47 8.30 -92.71 -0.77 12.70 16 42 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 43 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -72.87 371.09 0.60 -72.26 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.37 Total: 31.85 kcal Atomic # 6 Polarization: -70.64 SS G_CDS: 4.06 Total: -66.58 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -0.95 Total: -65.23 kcal Atomic # 8 Polarization: -93.09 SS G_CDS: -4.62 Total: -97.70 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 16 Polarization: 86.53 SS G_CDS: -0.30 Total: 86.23 kcal Total: -72.87 0.60 -72.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899567732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.401 kcal (2) G-P(sol) polarization free energy of solvation -72.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds