Wall clock time and date at job start Sat Apr 11 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38753 * 120.05357 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94329 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05386 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.11305 * 359.97438 * 6 5 4 8 8 C 1.38165 * 120.05319 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.02348 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46373 * 145.00128 * 9 8 7 11 11 C 1.53001 * 109.47148 * 264.99983 * 9 8 7 12 12 N 1.46498 * 109.47092 * 25.00167 * 9 8 7 13 13 C 1.34779 * 119.99750 * 154.99716 * 12 9 8 14 14 O 1.21279 * 120.00314 * 359.97438 * 13 12 9 15 15 C 1.50704 * 119.99633 * 179.97438 * 13 12 9 16 16 S 1.81401 * 109.46536 * 180.02562 * 15 13 12 17 17 O 1.42098 * 108.57935 * 294.48271 * 16 15 13 18 18 O 1.42095 * 108.58260 * 65.51663 * 16 15 13 19 19 C 1.81407 * 101.91882 * 180.02562 * 16 15 13 20 20 C 1.50699 * 109.47428 * 179.97438 * 19 16 15 21 21 H 1.08000 * 119.99576 * 0.02562 * 20 19 16 22 22 C 1.37871 * 120.00477 * 179.97438 * 20 19 16 23 23 N 1.31509 * 120.00428 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99809 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47251 * 89.99542 * 24 22 20 26 26 H 1.48496 * 109.47190 * 209.99977 * 24 22 20 27 27 H 1.48507 * 109.47095 * 329.99735 * 24 22 20 28 28 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 29 29 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 30 30 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.02917 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.97030 * 179.97438 * 5 4 3 33 33 H 1.08004 * 119.93990 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.97061 * 180.28475 * 7 6 5 35 35 H 1.09000 * 109.46923 * 179.97438 * 11 9 8 36 36 H 1.08999 * 109.47124 * 300.00085 * 11 9 8 37 37 H 1.08998 * 109.47253 * 60.00211 * 11 9 8 38 38 H 0.97005 * 120.00172 * 334.99739 * 12 9 8 39 39 H 1.08998 * 109.47101 * 299.99847 * 15 13 12 40 40 H 1.09002 * 109.46861 * 60.00615 * 15 13 12 41 41 H 1.08998 * 109.46743 * 300.00146 * 19 16 15 42 42 H 1.08997 * 109.47107 * 59.99825 * 19 16 15 43 43 H 0.96998 * 120.00333 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0011 8 6 3.4311 1.2847 -0.0005 9 6 4.2537 0.0220 0.0006 10 1 3.7464 -0.7415 0.5904 11 6 4.4274 -0.4749 -1.4360 12 7 5.5689 0.2965 0.5848 13 6 6.2756 -0.7009 1.1523 14 8 5.8227 -1.8256 1.1799 15 6 7.6288 -0.4186 1.7527 16 16 8.3209 -1.9520 2.4311 17 8 7.5085 -2.3734 3.5181 18 8 8.5663 -2.8514 1.3587 19 6 9.9145 -1.3856 3.0873 20 6 10.6462 -2.5497 3.7041 21 1 10.1976 -3.5321 3.7013 22 6 11.8887 -2.3608 4.2712 23 7 12.5269 -3.3765 4.8099 24 14 12.6648 -0.6617 4.2754 25 1 12.2662 0.0616 5.5096 26 1 14.1434 -0.7928 4.2341 27 1 12.2018 0.0970 3.0857 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2129 2.3203 -0.0014 32 1 1.3341 4.5113 -0.0019 33 1 3.7923 4.6380 -0.0016 34 1 5.1345 2.5750 0.0032 35 1 5.0228 -1.3879 -1.4352 36 1 3.4489 -0.6791 -1.8706 37 1 4.9347 0.2886 -2.0257 38 1 5.9310 1.1962 0.5631 39 1 8.2943 -0.0298 0.9820 40 1 7.5261 0.3179 2.5497 41 1 10.5128 -0.9676 2.2777 42 1 9.7442 -0.6211 3.8453 43 1 13.4012 -3.2437 5.2085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:11 Heat of formation + Delta-G solvation = -112.188361 kcal Electronic energy + Delta-G solvation = -27180.190245 eV Core-core repulsion = 23125.731153 eV Total energy + Delta-G solvation = -4054.459091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91820 -39.70281 -37.88877 -36.02916 -35.82243 -35.02241 -33.22545 -32.36589 -30.67750 -30.32186 -29.76267 -28.96701 -27.66907 -24.28720 -23.12998 -22.73987 -21.57810 -20.44554 -18.71046 -18.00953 -17.53360 -17.28884 -16.81556 -16.32931 -16.15144 -15.88311 -15.60128 -15.29453 -15.00809 -14.89030 -14.71759 -14.16264 -14.06129 -13.90007 -13.73149 -13.38535 -12.87929 -12.69504 -12.64122 -12.50689 -12.33843 -12.18709 -12.09086 -11.58269 -11.55477 -11.52365 -11.11864 -11.06953 -11.01397 -10.85872 -10.50466 -10.34003 -10.12634 -9.81487 -9.46120 -9.31284 -9.23635 -8.81421 -8.55348 -6.28017 -4.36364 0.72806 0.84939 1.00810 2.48564 2.86253 2.90560 3.14358 3.19201 3.23276 3.31958 3.71066 4.18388 4.22412 4.32567 4.37008 4.53859 4.57198 4.67258 4.75391 4.83691 4.87706 4.95649 4.97323 5.07427 5.11446 5.14652 5.21854 5.26867 5.37923 5.45499 5.59228 5.69931 5.87071 5.96450 6.05544 6.08391 6.16126 6.29015 6.29974 6.34300 6.95480 7.20597 7.21443 8.00469 8.06194 8.67484 9.25742 10.83233 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021522 B = 0.002453 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.687837 B =11411.836711 C =12139.264342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.139 3.861 4 C -0.204 4.204 5 C -0.082 4.082 6 C -0.151 4.151 7 C -0.080 4.080 8 C -0.120 4.120 9 C 0.189 3.811 10 H 0.106 0.894 11 C -0.157 4.157 12 N -0.723 5.723 13 C 0.546 3.454 14 O -0.520 6.520 15 C -0.680 4.680 16 S 2.446 3.554 17 O -0.932 6.932 18 O -0.932 6.932 19 C -0.461 4.461 20 C -0.528 4.528 21 H 0.090 0.910 22 C 0.087 3.913 23 N -0.880 5.880 24 Si 0.882 3.118 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.263 1.263 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.400 0.600 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.917 18.799 -12.453 31.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.093 3.907 4 C -0.223 4.223 5 C -0.100 4.100 6 C -0.170 4.170 7 C -0.099 4.099 8 C -0.121 4.121 9 C 0.084 3.916 10 H 0.124 0.876 11 C -0.215 4.215 12 N -0.377 5.377 13 C 0.331 3.669 14 O -0.395 6.395 15 C -0.803 4.803 16 S 2.624 3.376 17 O -0.930 6.930 18 O -0.929 6.929 19 C -0.595 4.595 20 C -0.567 4.567 21 H 0.108 0.892 22 C -0.120 4.120 23 N -0.516 5.516 24 Si 0.708 3.292 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.188 1.188 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.237 0.763 39 H 0.173 0.827 40 H 0.173 0.827 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.442 16.910 -12.377 30.705 hybrid contribution 0.753 2.577 0.035 2.685 sum -21.690 19.487 -12.342 31.663 Atomic orbital electron populations 1.23103 0.78120 1.04340 1.01268 1.86134 1.21535 1.26408 1.88255 1.18719 0.91297 0.84621 0.96080 1.21240 1.00135 0.92225 1.08705 1.20967 0.94705 0.97018 0.97279 1.21038 0.93940 0.98322 1.03663 1.20741 0.99794 0.91109 0.98236 1.19275 0.90827 0.95401 1.06621 1.19642 0.81951 0.94306 0.95665 0.87595 1.22139 1.02785 1.01968 0.94607 1.46085 1.19438 1.11941 1.60258 1.19353 0.85025 0.85080 0.77422 1.90865 1.70221 1.21258 1.57206 1.31210 1.05143 1.30358 1.13621 1.07788 0.78131 0.75942 0.75689 1.93490 1.68292 1.77842 1.53341 1.93489 1.85459 1.57685 1.56290 1.28118 1.15662 1.08163 1.07527 1.20107 1.03566 0.93222 1.39795 0.89237 1.24896 0.96147 0.97309 0.93603 1.69863 1.14465 1.30801 1.36438 0.86741 0.78973 0.84266 0.79209 1.19615 1.20620 1.18790 0.92554 0.92608 0.87912 0.85209 0.85655 0.85583 0.85473 0.91120 0.91210 0.92403 0.76337 0.82690 0.82713 0.89703 0.90134 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.03 9.63 -19.42 -0.19 -3.22 16 3 C 0.14 1.34 6.66 -39.22 -0.26 1.08 16 4 C -0.20 -1.55 9.04 -39.43 -0.36 -1.91 16 5 C -0.08 -0.55 10.04 -39.61 -0.40 -0.95 16 6 C -0.15 -1.05 10.04 -39.56 -0.40 -1.45 16 7 C -0.08 -0.64 9.24 -39.61 -0.37 -1.01 16 8 C -0.12 -1.20 5.07 -104.47 -0.53 -1.73 16 9 C 0.19 2.23 2.51 -69.08 -0.17 2.06 16 10 H 0.11 1.52 7.13 -51.93 -0.37 1.14 16 11 C -0.16 -1.72 9.47 37.16 0.35 -1.37 16 12 N -0.72 -8.46 5.00 -54.93 -0.27 -8.73 16 13 C 0.55 8.66 7.81 -10.98 -0.09 8.58 16 14 O -0.52 -10.65 15.29 2.55 0.04 -10.62 16 15 C -0.68 -9.40 6.29 36.01 0.23 -9.18 16 16 S 2.45 51.35 3.88 -107.50 -0.42 50.93 16 17 O -0.93 -22.90 17.94 -59.54 -1.07 -23.97 16 18 O -0.93 -22.77 17.95 -59.52 -1.07 -23.84 16 19 C -0.46 -10.04 4.63 36.00 0.17 -9.87 16 20 C -0.53 -14.89 9.68 -34.44 -0.33 -15.22 16 21 H 0.09 2.77 7.96 -52.49 -0.42 2.36 16 22 C 0.09 2.44 5.47 -17.82 -0.10 2.35 16 23 N -0.88 -26.31 13.96 55.43 0.77 -25.54 16 24 Si 0.88 20.03 27.47 -169.99 -4.67 15.36 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.26 -5.42 6.54 56.52 0.37 -5.05 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 0.70 6.30 -52.49 -0.33 0.37 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.13 0.75 6.07 -52.49 -0.32 0.43 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.40 3.25 6.21 -40.82 -0.25 3.00 16 39 H 0.16 1.53 8.14 -51.92 -0.42 1.10 16 40 H 0.15 1.54 8.14 -51.92 -0.42 1.12 16 41 H 0.08 1.63 7.20 -51.93 -0.37 1.26 16 42 H 0.08 1.53 7.57 -51.93 -0.39 1.13 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -39.72 374.65 -8.29 -48.01 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.80 Total: 3.44 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -1.26 Total: -27.48 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.50 Total: -34.27 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: -2.28 Total: -61.65 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Atomic # 16 Polarization: 51.35 SS G_CDS: -0.42 Total: 50.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.72 -8.29 -48.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.174 kcal (2) G-P(sol) polarization free energy of solvation -39.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds