Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99923 * 2 1 4 4 C 1.38750 * 120.05343 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94223 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05715 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11326 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05368 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.03017 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47242 * 212.76717 * 9 8 7 11 11 C 1.52999 * 109.47082 * 92.76683 * 9 8 7 12 12 N 1.46499 * 109.47028 * 332.76959 * 9 8 7 13 13 C 1.34776 * 119.99655 * 207.19402 * 12 9 8 14 14 O 1.21281 * 120.00338 * 359.97438 * 13 12 9 15 15 C 1.50705 * 119.99722 * 179.97438 * 13 12 9 16 16 S 1.81402 * 109.47191 * 179.97438 * 15 13 12 17 17 O 1.42098 * 108.57874 * 294.49134 * 16 15 13 18 18 O 1.42104 * 108.57701 * 65.51310 * 16 15 13 19 19 C 1.81395 * 101.92294 * 180.02562 * 16 15 13 20 20 C 1.50699 * 109.47020 * 180.02562 * 19 16 15 21 21 H 1.07992 * 120.00377 * 0.02562 * 20 19 16 22 22 C 1.37880 * 119.99647 * 179.97438 * 20 19 16 23 23 N 1.31517 * 119.99703 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00345 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46697 * 90.00016 * 24 22 20 26 26 H 1.48499 * 109.47056 * 210.00136 * 24 22 20 27 27 H 1.48498 * 109.46861 * 330.00172 * 24 22 20 28 28 H 1.09004 * 109.47179 * 299.99837 * 1 2 3 29 29 H 1.08994 * 109.47381 * 60.00276 * 1 2 3 30 30 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.08008 * 120.02964 * 0.05292 * 4 3 2 32 32 H 1.08004 * 119.97327 * 179.72360 * 5 4 3 33 33 H 1.08002 * 119.94778 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.97697 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47188 * 180.02562 * 11 9 8 36 36 H 1.09011 * 109.47211 * 300.00241 * 11 9 8 37 37 H 1.08999 * 109.47342 * 60.00123 * 11 9 8 38 38 H 0.97003 * 120.00171 * 27.18689 * 12 9 8 39 39 H 1.08997 * 109.47289 * 299.99438 * 15 13 12 40 40 H 1.09005 * 109.47132 * 59.99880 * 15 13 12 41 41 H 1.09002 * 109.47090 * 300.00069 * 19 16 15 42 42 H 1.09004 * 109.47184 * 60.00078 * 19 16 15 43 43 H 0.96999 * 119.99918 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0021 8 6 3.4311 1.2849 -0.0016 9 6 4.2537 0.0222 -0.0016 10 1 3.7278 -0.7541 -0.5574 11 6 4.4743 -0.4428 1.4392 12 7 5.5491 0.2833 -0.6342 13 6 6.2167 -0.7181 -1.2408 14 8 5.7454 -1.8353 -1.2627 15 6 7.5490 -0.4494 -1.8920 16 16 8.1893 -1.9849 -2.6149 17 8 8.4632 -2.9006 -1.5634 18 8 7.3274 -2.3811 -3.6730 19 6 9.7646 -1.4355 -3.3270 20 6 10.4526 -2.6033 -3.9856 21 1 9.9885 -3.5784 -3.9772 22 6 11.6743 -2.4266 -4.6000 23 7 12.2745 -3.4457 -5.1753 24 14 12.4762 -0.7396 -4.6166 25 1 13.3374 -0.5892 -3.4163 26 1 13.3042 -0.5971 -5.8411 27 1 11.4243 0.3085 -4.6057 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3203 -0.0001 32 1 1.3339 4.5113 -0.0060 33 1 3.7921 4.6381 -0.0024 34 1 5.1343 2.5752 -0.0021 35 1 5.0697 -1.3559 1.4393 36 1 5.0002 0.3336 1.9951 37 1 3.5106 -0.6371 1.9099 38 1 5.9262 1.1768 -0.6165 39 1 7.4261 0.2980 -2.6759 40 1 8.2509 -0.0798 -1.1444 41 1 9.5769 -0.6593 -4.0688 42 1 10.4011 -1.0368 -2.5369 43 1 13.1341 -3.3215 -5.6072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -112.836137 kcal Electronic energy + Delta-G solvation = -27185.087925 eV Core-core repulsion = 23130.600744 eV Total energy + Delta-G solvation = -4054.487181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91059 -39.69829 -37.88461 -36.02770 -35.82234 -35.02139 -33.22435 -32.36538 -30.66751 -30.31956 -29.76259 -28.97376 -27.66158 -24.28516 -23.12805 -22.73155 -21.57468 -20.45349 -18.70086 -18.00895 -17.53482 -17.29088 -16.80880 -16.33596 -16.14553 -15.87840 -15.59971 -15.29275 -14.99085 -14.90072 -14.70738 -14.16526 -14.06901 -13.87980 -13.72600 -13.40155 -12.87550 -12.68976 -12.64248 -12.51127 -12.34021 -12.18705 -12.09973 -11.58185 -11.54694 -11.52366 -11.11799 -11.06881 -11.01277 -10.85866 -10.50374 -10.33977 -10.12783 -9.81560 -9.44908 -9.31367 -9.24019 -8.81370 -8.55258 -6.28063 -4.36367 0.72791 0.85321 1.01217 2.48592 2.86822 2.90830 3.14311 3.19231 3.23258 3.32605 3.71140 4.18982 4.22402 4.33008 4.37441 4.54314 4.57298 4.67624 4.75968 4.83928 4.87917 4.95824 4.97260 5.07513 5.11977 5.14296 5.22196 5.26887 5.37932 5.45082 5.58850 5.69926 5.87357 5.96811 6.05054 6.08024 6.16060 6.28985 6.30245 6.34411 6.95988 7.20717 7.21450 8.00624 8.06192 8.67511 9.25690 10.83186 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002461 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.417187 B =11373.121934 C =12074.637210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.139 3.861 4 C -0.205 4.205 5 C -0.081 4.081 6 C -0.152 4.152 7 C -0.080 4.080 8 C -0.120 4.120 9 C 0.187 3.813 10 H 0.108 0.892 11 C -0.156 4.156 12 N -0.722 5.722 13 C 0.546 3.454 14 O -0.520 6.520 15 C -0.680 4.680 16 S 2.446 3.554 17 O -0.932 6.932 18 O -0.932 6.932 19 C -0.461 4.461 20 C -0.528 4.528 21 H 0.090 0.910 22 C 0.087 3.913 23 N -0.880 5.880 24 Si 0.882 3.118 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.263 1.263 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.168 18.933 13.290 31.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.093 3.907 4 C -0.223 4.223 5 C -0.100 4.100 6 C -0.170 4.170 7 C -0.098 4.098 8 C -0.122 4.122 9 C 0.083 3.917 10 H 0.125 0.875 11 C -0.215 4.215 12 N -0.376 5.376 13 C 0.331 3.669 14 O -0.396 6.396 15 C -0.803 4.803 16 S 2.624 3.376 17 O -0.929 6.929 18 O -0.929 6.929 19 C -0.595 4.595 20 C -0.567 4.567 21 H 0.108 0.892 22 C -0.120 4.120 23 N -0.516 5.516 24 Si 0.708 3.292 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.188 1.188 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.236 0.764 39 H 0.173 0.827 40 H 0.173 0.827 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.724 17.054 13.215 30.617 hybrid contribution 0.798 2.556 -0.030 2.678 sum -20.926 19.610 13.185 31.564 Atomic orbital electron populations 1.23102 0.78115 1.04345 1.01265 1.86135 1.21543 1.26409 1.88253 1.18730 0.91323 0.84617 0.96038 1.21239 1.00136 0.92227 1.08721 1.20964 0.94709 0.97015 0.97262 1.21035 0.93940 0.98324 1.03701 1.20743 0.99801 0.91104 0.98172 1.19287 0.90816 0.95423 1.06638 1.19653 0.82530 0.94546 0.94947 0.87453 1.22143 1.02687 1.02041 0.94602 1.46064 1.21457 1.12372 1.57754 1.19355 0.84836 0.84967 0.77716 1.90865 1.68265 1.21818 1.58620 1.31210 1.05047 1.30418 1.13650 1.07791 0.78145 0.75896 0.75727 1.93489 1.85170 1.56810 1.57480 1.93492 1.65899 1.78549 1.55001 1.28118 1.15300 1.08249 1.07810 1.20109 1.05606 0.93552 1.37424 0.89234 1.24902 0.96163 0.97221 0.93677 1.69868 1.16275 1.30670 1.34751 0.86739 0.79836 0.84249 0.78358 1.19610 1.20620 1.18790 0.92610 0.92551 0.87910 0.85212 0.85661 0.85594 0.85481 0.91172 0.92387 0.91234 0.76359 0.82717 0.82687 0.89709 0.90121 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.06 9.59 -19.44 -0.19 -3.25 16 3 C 0.14 1.35 6.66 -39.22 -0.26 1.09 16 4 C -0.20 -1.56 9.04 -39.44 -0.36 -1.92 16 5 C -0.08 -0.55 10.04 -39.61 -0.40 -0.95 16 6 C -0.15 -1.06 10.04 -39.56 -0.40 -1.46 16 7 C -0.08 -0.64 9.22 -39.61 -0.37 -1.00 16 8 C -0.12 -1.20 5.06 -104.47 -0.53 -1.73 16 9 C 0.19 2.21 2.57 -69.08 -0.18 2.04 16 10 H 0.11 1.54 6.99 -51.93 -0.36 1.18 16 11 C -0.16 -1.70 9.49 37.16 0.35 -1.34 16 12 N -0.72 -8.45 4.98 -54.93 -0.27 -8.72 16 13 C 0.55 8.67 7.83 -10.98 -0.09 8.59 16 14 O -0.52 -10.68 15.25 2.56 0.04 -10.64 16 15 C -0.68 -9.41 6.29 36.01 0.23 -9.19 16 16 S 2.45 51.39 3.88 -107.50 -0.42 50.97 16 17 O -0.93 -22.78 17.95 -59.52 -1.07 -23.85 16 18 O -0.93 -22.93 17.95 -59.53 -1.07 -24.00 16 19 C -0.46 -10.04 4.63 36.01 0.17 -9.88 16 20 C -0.53 -14.89 9.68 -34.44 -0.33 -15.23 16 21 H 0.09 2.78 7.96 -52.49 -0.42 2.36 16 22 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 23 N -0.88 -26.32 13.96 55.43 0.77 -25.54 16 24 Si 0.88 20.04 27.47 -169.99 -4.67 15.37 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 28 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.13 0.71 6.30 -52.48 -0.33 0.38 16 32 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.75 6.17 -52.49 -0.32 0.42 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.40 3.24 6.31 -40.82 -0.26 2.99 16 39 H 0.15 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.16 1.52 8.14 -51.92 -0.42 1.10 16 41 H 0.08 1.64 7.20 -51.92 -0.37 1.26 16 42 H 0.08 1.53 7.57 -51.92 -0.39 1.13 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -39.76 374.70 -8.29 -48.05 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.80 Total: 3.45 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -1.26 Total: -27.49 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.50 Total: -34.26 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -2.28 Total: -61.74 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.42 Total: 50.97 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.76 -8.29 -48.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.783 kcal (2) G-P(sol) polarization free energy of solvation -39.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds