Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99923 * 2 1 4 4 C 1.38750 * 120.05343 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94223 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05715 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11326 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05368 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.03017 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47242 * 212.76717 * 9 8 7 11 11 C 1.52999 * 109.47082 * 92.76683 * 9 8 7 12 12 N 1.46499 * 109.47028 * 332.76959 * 9 8 7 13 13 C 1.34776 * 119.99655 * 207.19402 * 12 9 8 14 14 O 1.21281 * 120.00338 * 359.97438 * 13 12 9 15 15 C 1.50705 * 119.99722 * 179.97438 * 13 12 9 16 16 S 1.81402 * 109.47191 * 179.97438 * 15 13 12 17 17 O 1.42098 * 108.57874 * 294.49134 * 16 15 13 18 18 O 1.42104 * 108.57701 * 65.51310 * 16 15 13 19 19 C 1.81395 * 101.92294 * 180.02562 * 16 15 13 20 20 C 1.50699 * 109.47020 * 180.02562 * 19 16 15 21 21 H 1.07992 * 120.00377 * 0.02562 * 20 19 16 22 22 C 1.37880 * 119.99647 * 179.97438 * 20 19 16 23 23 N 1.31517 * 119.99703 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00345 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46697 * 90.00016 * 24 22 20 26 26 H 1.48499 * 109.47056 * 210.00136 * 24 22 20 27 27 H 1.48498 * 109.46861 * 330.00172 * 24 22 20 28 28 H 1.09004 * 109.47179 * 299.99837 * 1 2 3 29 29 H 1.08994 * 109.47381 * 60.00276 * 1 2 3 30 30 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.08008 * 120.02964 * 0.05292 * 4 3 2 32 32 H 1.08004 * 119.97327 * 179.72360 * 5 4 3 33 33 H 1.08002 * 119.94778 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.97697 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47188 * 180.02562 * 11 9 8 36 36 H 1.09011 * 109.47211 * 300.00241 * 11 9 8 37 37 H 1.08999 * 109.47342 * 60.00123 * 11 9 8 38 38 H 0.97003 * 120.00171 * 27.18689 * 12 9 8 39 39 H 1.08997 * 109.47289 * 299.99438 * 15 13 12 40 40 H 1.09005 * 109.47132 * 59.99880 * 15 13 12 41 41 H 1.09002 * 109.47090 * 300.00069 * 19 16 15 42 42 H 1.09004 * 109.47184 * 60.00078 * 19 16 15 43 43 H 0.96999 * 119.99918 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0021 8 6 3.4311 1.2849 -0.0016 9 6 4.2537 0.0222 -0.0016 10 1 3.7278 -0.7541 -0.5574 11 6 4.4743 -0.4428 1.4392 12 7 5.5491 0.2833 -0.6342 13 6 6.2167 -0.7181 -1.2408 14 8 5.7454 -1.8353 -1.2627 15 6 7.5490 -0.4494 -1.8920 16 16 8.1893 -1.9849 -2.6149 17 8 8.4632 -2.9006 -1.5634 18 8 7.3274 -2.3811 -3.6730 19 6 9.7646 -1.4355 -3.3270 20 6 10.4526 -2.6033 -3.9856 21 1 9.9885 -3.5784 -3.9772 22 6 11.6743 -2.4266 -4.6000 23 7 12.2745 -3.4457 -5.1753 24 14 12.4762 -0.7396 -4.6166 25 1 13.3374 -0.5892 -3.4163 26 1 13.3042 -0.5971 -5.8411 27 1 11.4243 0.3085 -4.6057 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3203 -0.0001 32 1 1.3339 4.5113 -0.0060 33 1 3.7921 4.6381 -0.0024 34 1 5.1343 2.5752 -0.0021 35 1 5.0697 -1.3559 1.4393 36 1 5.0002 0.3336 1.9951 37 1 3.5106 -0.6371 1.9099 38 1 5.9262 1.1768 -0.6165 39 1 7.4261 0.2980 -2.6759 40 1 8.2509 -0.0798 -1.1444 41 1 9.5769 -0.6593 -4.0688 42 1 10.4011 -1.0368 -2.5369 43 1 13.1341 -3.3215 -5.6072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -146.038915 kcal Electronic energy + Delta-G solvation = -27186.527706 eV Core-core repulsion = 23130.600744 eV Total energy + Delta-G solvation = -4055.926961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64974 -40.73813 -38.52960 -37.79936 -36.87540 -36.66398 -35.26558 -33.38692 -31.79622 -31.24011 -31.08147 -29.90686 -28.14784 -25.27104 -24.86803 -23.41749 -22.38742 -21.45471 -19.74950 -19.50421 -19.14103 -18.46820 -17.83154 -17.29229 -17.23823 -16.93712 -16.73020 -16.62304 -16.18111 -16.07915 -15.73725 -15.49163 -14.96895 -14.80005 -14.62512 -14.50517 -14.23526 -14.17037 -13.66435 -13.45447 -13.37181 -13.23241 -12.92264 -12.86472 -12.84292 -12.72014 -12.54405 -12.25864 -12.17796 -12.02850 -11.87104 -11.78021 -11.68750 -11.43682 -11.05985 -10.87008 -10.43825 -9.86606 -9.14341 -8.38176 -6.55665 -0.88024 0.28931 0.45764 1.29795 1.39123 1.45019 1.55646 1.81697 2.19783 2.34883 2.36448 2.76588 2.92821 3.02793 3.28322 3.48819 3.52665 3.86116 4.02289 4.04571 4.15660 4.24201 4.28284 4.30461 4.37062 4.42744 4.44583 4.49246 4.63482 4.64912 4.69194 4.72027 4.86668 4.96953 5.16084 5.17531 5.29680 5.37854 5.48443 5.57308 5.83119 5.88829 6.21630 6.42109 6.50567 6.95666 7.11148 8.78149 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002461 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.417187 B =11373.121934 C =12074.637210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.117 3.883 4 C -0.210 4.210 5 C -0.081 4.081 6 C -0.152 4.152 7 C -0.082 4.082 8 C -0.142 4.142 9 C 0.189 3.811 10 H 0.070 0.930 11 C -0.150 4.150 12 N -0.696 5.696 13 C 0.533 3.467 14 O -0.581 6.581 15 C -0.641 4.641 16 S 2.433 3.567 17 O -0.988 6.988 18 O -0.989 6.989 19 C -0.466 4.466 20 C -0.557 4.557 21 H 0.027 0.973 22 C 0.013 3.987 23 N -0.942 5.942 24 Si 0.960 3.040 25 H -0.255 1.255 26 H -0.284 1.284 27 H -0.213 1.213 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.422 0.578 39 H 0.210 0.790 40 H 0.213 0.787 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.245 25.513 14.612 36.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.072 3.928 4 C -0.228 4.228 5 C -0.099 4.099 6 C -0.170 4.170 7 C -0.101 4.101 8 C -0.143 4.143 9 C 0.084 3.916 10 H 0.088 0.912 11 C -0.209 4.209 12 N -0.351 5.351 13 C 0.319 3.681 14 O -0.461 6.461 15 C -0.771 4.771 16 S 2.619 3.381 17 O -0.985 6.985 18 O -0.987 6.987 19 C -0.599 4.599 20 C -0.596 4.596 21 H 0.045 0.955 22 C -0.187 4.187 23 N -0.579 5.579 24 Si 0.779 3.221 25 H -0.179 1.179 26 H -0.209 1.209 27 H -0.135 1.135 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.263 0.737 39 H 0.227 0.773 40 H 0.230 0.770 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.805 23.615 14.530 35.273 hybrid contribution 0.653 0.528 -0.379 0.922 sum -21.151 24.143 14.150 35.079 Atomic orbital electron populations 1.23317 0.76499 1.05265 1.02409 1.86100 1.23458 1.27294 1.88532 1.19025 0.91691 0.85172 0.96939 1.21499 1.01078 0.91944 1.08320 1.21373 0.95239 0.97534 0.95787 1.21397 0.94080 0.99055 1.02505 1.21021 1.01074 0.90453 0.97504 1.19239 0.90882 0.95137 1.09066 1.19524 0.82400 0.95072 0.94588 0.91164 1.22078 1.02710 1.01499 0.94579 1.45856 1.20871 1.12490 1.55848 1.19761 0.85588 0.84829 0.77908 1.90872 1.69769 1.24426 1.60999 1.30732 1.04655 1.25572 1.16179 1.07397 0.77738 0.78137 0.74778 1.93423 1.85772 1.61071 1.58218 1.93425 1.66729 1.81389 1.57119 1.28082 1.15734 1.06468 1.09618 1.20405 1.06586 0.93765 1.38795 0.95505 1.26251 0.96673 1.03141 0.92590 1.70064 1.17152 1.34309 1.36407 0.85542 0.79699 0.78137 0.78733 1.17880 1.20927 1.13515 0.91053 0.91700 0.87272 0.83550 0.83091 0.82961 0.83250 0.93706 0.90151 0.90956 0.73749 0.77303 0.77005 0.85778 0.85848 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.86 9.59 -92.47 -0.89 -7.75 16 3 C 0.12 2.17 6.66 22.51 0.15 2.32 16 4 C -0.21 -2.73 9.04 22.36 0.20 -2.53 16 5 C -0.08 -0.81 10.04 22.25 0.22 -0.58 16 6 C -0.15 -1.46 10.04 22.28 0.22 -1.24 16 7 C -0.08 -1.00 9.22 22.25 0.21 -0.80 16 8 C -0.14 -2.60 5.06 -19.77 -0.10 -2.70 16 9 C 0.19 4.36 2.57 44.25 0.11 4.47 16 10 H 0.07 2.16 6.99 -2.39 -0.02 2.14 16 11 C -0.15 -3.22 9.49 71.98 0.68 -2.54 16 12 N -0.70 -14.39 4.98 -446.10 -2.22 -16.61 16 13 C 0.53 15.97 7.83 87.66 0.69 16.66 16 14 O -0.58 -24.67 15.25 -0.17 0.00 -24.67 16 15 C -0.64 -14.80 6.29 71.24 0.45 -14.36 16 16 S 2.43 102.15 3.88 -56.49 -0.22 101.94 16 17 O -0.99 -50.43 17.95 -125.76 -2.26 -52.68 16 18 O -0.99 -50.89 17.95 -125.74 -2.26 -53.15 16 19 C -0.47 -19.16 4.63 71.24 0.33 -18.83 16 20 C -0.56 -32.40 9.68 25.60 0.25 -32.15 16 21 H 0.03 1.82 7.96 -2.91 -0.02 1.79 16 22 C 0.01 0.76 5.47 84.65 0.46 1.23 16 23 N -0.94 -58.88 13.96 21.45 0.30 -58.59 16 24 Si 0.96 39.10 27.47 68.60 1.88 40.99 16 25 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 26 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.21 -6.96 6.54 99.48 0.65 -6.31 16 28 H 0.07 0.54 7.66 -2.38 -0.02 0.52 16 29 H 0.06 0.58 7.66 -2.39 -0.02 0.57 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.15 1.27 6.30 -2.91 -0.02 1.25 16 32 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.15 0.98 6.17 -2.91 -0.02 0.96 16 35 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.42 4.73 6.31 -92.71 -0.59 4.14 16 39 H 0.21 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.21 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.12 4.16 7.20 -2.39 -0.02 4.14 16 42 H 0.12 4.06 7.57 -2.39 -0.02 4.04 16 43 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -100.31 374.70 -0.27 -100.58 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.40 Total: 19.66 kcal Atomic # 6 Polarization: -54.71 SS G_CDS: 4.99 Total: -49.72 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.92 Total: -75.19 kcal Atomic # 8 Polarization: -132.85 SS G_CDS: -5.40 Total: -138.25 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.88 Total: 40.99 kcal Atomic # 16 Polarization: 102.15 SS G_CDS: -0.22 Total: 101.94 kcal Total: -100.31 -0.27 -100.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.457 kcal (2) G-P(sol) polarization free energy of solvation -100.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds