Wall clock time and date at job start Sat Apr 11 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 116.99584 * 2 1 4 4 C 1.38752 * 120.05861 * 359.97438 * 3 2 1 5 5 C 1.38128 * 119.94499 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05740 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.11067 * 359.97438 * 6 5 4 8 8 C 1.38163 * 120.05527 * 0.30253 * 7 6 5 9 9 C 1.50693 * 120.02857 * 179.72417 * 8 7 6 10 10 N 1.46506 * 109.47034 * 259.99302 * 9 8 7 11 11 C 1.34770 * 120.00062 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00114 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.46771 * 40.00380 * 13 11 10 15 15 C 1.53001 * 109.46926 * 280.00332 * 13 11 10 16 16 S 1.81398 * 109.47426 * 160.00207 * 13 11 10 17 17 O 1.42105 * 108.58037 * 294.48636 * 16 13 11 18 18 O 1.42097 * 108.57923 * 65.51083 * 16 13 11 19 19 C 1.81394 * 101.92395 * 180.02562 * 16 13 11 20 20 C 1.50695 * 109.47355 * 180.02562 * 19 16 13 21 21 H 1.08000 * 120.00288 * 359.97438 * 20 19 16 22 22 C 1.37881 * 120.00216 * 179.97438 * 20 19 16 23 23 N 1.31511 * 119.99894 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00247 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47110 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46939 * 119.99983 * 24 22 20 27 27 H 1.48500 * 109.47220 * 240.00347 * 24 22 20 28 28 H 1.09001 * 109.47308 * 60.00938 * 1 2 3 29 29 H 1.09007 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47595 * 300.00228 * 1 2 3 31 31 H 1.07998 * 120.02555 * 359.96515 * 4 3 2 32 32 H 1.08005 * 119.97015 * 180.02562 * 5 4 3 33 33 H 1.07998 * 119.94637 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.96904 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47331 * 19.99502 * 9 8 7 36 36 H 1.09001 * 109.47612 * 139.99554 * 9 8 7 37 37 H 0.96996 * 119.99660 * 359.97438 * 10 9 8 38 38 H 1.09002 * 109.47040 * 179.97438 * 15 13 11 39 39 H 1.08999 * 109.46977 * 299.99375 * 15 13 11 40 40 H 1.08999 * 109.47091 * 59.99747 * 15 13 11 41 41 H 1.09005 * 109.46946 * 299.99834 * 19 16 13 42 42 H 1.08997 * 109.47686 * 59.99544 * 19 16 13 43 43 H 0.97000 * 120.00438 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3017 3.6759 0.0016 7 6 4.0558 2.5172 0.0032 8 6 3.4311 1.2849 -0.0031 9 6 4.2537 0.0224 -0.0076 10 7 4.3210 -0.5117 -1.3702 11 6 5.0092 -1.6439 -1.6170 12 8 5.5725 -2.2209 -0.7110 13 6 5.0789 -2.1930 -3.0186 14 1 5.1977 -1.3715 -3.7251 15 6 3.7892 -2.9537 -3.3330 16 16 6.4942 -3.3191 -3.1573 17 8 7.6887 -2.5681 -2.9885 18 8 6.2596 -4.4459 -2.3239 19 6 6.3845 -3.8475 -4.8891 20 6 7.5048 -4.8084 -5.1931 21 1 8.2125 -5.0744 -4.4218 22 6 7.6266 -5.3481 -6.4560 23 7 6.7653 -5.0240 -7.3955 24 14 9.0158 -6.5387 -6.8331 25 1 9.8420 -6.7370 -5.6152 26 1 8.4479 -7.8417 -7.2630 27 1 9.8615 -5.9842 -7.9206 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2127 2.3203 -0.0015 32 1 1.3337 4.5114 0.0000 33 1 3.7920 4.6382 0.0024 34 1 5.1343 2.5754 0.0049 35 1 5.2607 0.2435 0.3461 36 1 3.7917 -0.7148 0.6491 37 1 3.8702 -0.0505 -2.0947 38 1 3.8394 -3.3505 -4.3470 39 1 3.6705 -3.7752 -2.6265 40 1 2.9387 -2.2770 -3.2497 41 1 5.4273 -4.3408 -5.0585 42 1 6.4650 -2.9772 -5.5404 43 1 6.8511 -5.4033 -8.2841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:25 Heat of formation + Delta-G solvation = -122.842549 kcal Electronic energy + Delta-G solvation = -27357.349462 eV Core-core repulsion = 23302.428371 eV Total energy + Delta-G solvation = -4054.921091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74765 -39.57857 -37.81221 -35.94203 -35.15566 -34.87394 -33.52298 -33.16227 -31.53764 -30.49625 -29.00945 -27.80704 -26.52236 -24.38345 -23.53467 -22.54211 -21.84353 -20.65657 -18.54375 -17.93423 -17.46489 -16.92580 -16.70101 -16.42092 -16.08857 -15.70423 -15.45108 -15.30359 -14.97617 -14.79918 -14.62388 -14.20175 -14.11957 -13.80109 -13.34489 -13.03201 -12.91262 -12.61949 -12.53871 -12.37642 -12.31552 -11.92442 -11.80811 -11.69592 -11.52736 -11.34395 -11.20573 -11.01851 -10.95770 -10.87640 -10.56893 -10.11949 -9.95933 -9.73481 -9.32951 -9.13079 -9.02748 -8.69137 -8.58280 -6.31625 -4.40097 0.79873 0.93331 1.02399 2.63535 2.88050 3.03158 3.23298 3.30285 3.39028 3.48226 3.85117 4.25457 4.26523 4.39929 4.50039 4.58850 4.63247 4.69620 4.75929 4.89868 4.93459 4.95949 5.04314 5.12185 5.16461 5.21461 5.34110 5.40004 5.47525 5.64553 5.71168 5.79890 5.88834 6.03227 6.12241 6.13845 6.32663 6.36215 6.66511 6.70645 6.96550 7.37708 7.51974 7.76791 8.15138 8.62003 9.26717 10.80399 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.002432 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.465751 B =11511.455109 C =11756.828061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.145 3.855 4 C -0.213 4.213 5 C -0.073 4.073 6 C -0.160 4.160 7 C -0.061 4.061 8 C -0.141 4.141 9 C 0.168 3.832 10 N -0.715 5.715 11 C 0.547 3.453 12 O -0.525 6.525 13 C -0.632 4.632 14 H 0.148 0.852 15 C -0.131 4.131 16 S 2.419 3.581 17 O -0.950 6.950 18 O -0.933 6.933 19 C -0.406 4.406 20 C -0.527 4.527 21 H 0.073 0.927 22 C 0.075 3.925 23 N -0.882 5.882 24 Si 0.905 3.095 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.278 1.278 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.402 0.598 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 17.908 11.189 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.099 3.901 4 C -0.231 4.231 5 C -0.091 4.091 6 C -0.178 4.178 7 C -0.079 4.079 8 C -0.142 4.142 9 C 0.045 3.955 10 N -0.367 5.367 11 C 0.332 3.668 12 O -0.401 6.401 13 C -0.735 4.735 14 H 0.166 0.834 15 C -0.189 4.189 16 S 2.600 3.400 17 O -0.947 6.947 18 O -0.930 6.930 19 C -0.540 4.540 20 C -0.566 4.566 21 H 0.091 0.909 22 C -0.131 4.131 23 N -0.519 5.519 24 Si 0.731 3.269 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.204 1.204 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.236 0.764 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.018 17.093 12.411 25.918 hybrid contribution -0.669 0.387 -1.294 1.508 sum -15.688 17.481 11.116 25.986 Atomic orbital electron populations 1.23103 0.78184 1.04320 1.01264 1.86169 1.21451 1.26382 1.88059 1.18918 0.91679 0.84533 0.95012 1.21255 1.00153 0.92293 1.09431 1.21008 0.94761 0.97012 0.96360 1.21088 0.93894 0.98519 1.04294 1.21039 1.00369 0.90805 0.95710 1.19267 0.90578 0.95605 1.08784 1.20039 0.99252 0.91930 0.84254 1.45854 1.54182 1.26265 1.10439 1.19436 0.78366 0.80352 0.88680 1.90845 1.45072 1.58288 1.45878 1.30975 1.22973 1.18039 1.01557 0.83440 1.21540 0.92848 1.00254 1.04294 1.08690 0.74876 0.75463 0.81021 1.93458 1.41198 1.72892 1.87155 1.93464 1.84785 1.47751 1.66987 1.27623 1.06790 1.06984 1.12640 1.20411 1.11206 1.26757 0.98189 0.90867 1.24923 0.96516 0.96195 0.95456 1.69949 1.35626 1.43079 1.03242 0.86295 0.81409 0.80222 0.78936 1.18873 1.20345 1.20364 0.92537 0.87966 0.92631 0.85292 0.85676 0.85565 0.84830 0.90296 0.90046 0.76375 0.89235 0.90158 0.91070 0.89338 0.89695 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.00 9.73 -19.42 -0.19 -3.19 16 3 C 0.14 1.37 6.66 -39.21 -0.26 1.11 16 4 C -0.21 -1.60 9.04 -39.43 -0.36 -1.96 16 5 C -0.07 -0.50 10.04 -39.61 -0.40 -0.89 16 6 C -0.16 -1.14 10.04 -39.56 -0.40 -1.54 16 7 C -0.06 -0.51 9.67 -39.60 -0.38 -0.89 16 8 C -0.14 -1.40 5.26 -104.48 -0.55 -1.95 16 9 C 0.17 2.03 5.47 -5.19 -0.03 2.00 16 10 N -0.72 -9.36 5.55 -61.47 -0.34 -9.70 16 11 C 0.55 9.49 7.00 -10.99 -0.08 9.41 16 12 O -0.52 -11.35 15.65 -3.35 -0.05 -11.40 16 13 C -0.63 -10.34 3.10 -27.88 -0.09 -10.42 16 14 H 0.15 1.86 8.14 -51.92 -0.42 1.44 16 15 C -0.13 -1.83 8.93 37.16 0.33 -1.50 16 16 S 2.42 54.44 3.59 -107.50 -0.39 54.05 16 17 O -0.95 -24.11 18.10 -57.83 -1.05 -25.16 16 18 O -0.93 -23.84 17.40 -62.66 -1.09 -24.93 16 19 C -0.41 -9.67 5.11 36.00 0.18 -9.49 16 20 C -0.53 -14.74 9.13 -34.44 -0.31 -15.06 16 21 H 0.07 2.07 7.71 -52.49 -0.40 1.66 16 22 C 0.07 2.06 5.46 -17.82 -0.10 1.97 16 23 N -0.88 -24.63 13.29 55.43 0.74 -23.89 16 24 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 25 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 32 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.96 8.04 -52.49 -0.42 0.54 16 35 H 0.08 0.95 8.00 -51.93 -0.42 0.54 16 36 H 0.08 1.08 7.85 -51.93 -0.41 0.67 16 37 H 0.40 4.22 8.46 -40.82 -0.35 3.88 16 38 H 0.09 1.18 6.56 -51.93 -0.34 0.83 16 39 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 2.00 6.87 -51.92 -0.36 1.65 16 42 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -37.97 379.04 -9.03 -46.99 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.91 Total: 3.40 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -1.44 Total: -28.07 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.40 Total: -33.59 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -2.38 Total: -64.68 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 54.44 SS G_CDS: -0.39 Total: 54.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.97 -9.03 -46.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.849 kcal (2) G-P(sol) polarization free energy of solvation -37.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds