Wall clock time and date at job start Sat Apr 11 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 116.99584 * 2 1 4 4 C 1.38752 * 120.05861 * 359.97438 * 3 2 1 5 5 C 1.38128 * 119.94499 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05740 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.11067 * 359.97438 * 6 5 4 8 8 C 1.38163 * 120.05527 * 0.30253 * 7 6 5 9 9 C 1.50693 * 120.02857 * 179.72417 * 8 7 6 10 10 N 1.46506 * 109.47034 * 259.99302 * 9 8 7 11 11 C 1.34770 * 120.00062 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00114 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.46771 * 40.00380 * 13 11 10 15 15 C 1.53001 * 109.46926 * 280.00332 * 13 11 10 16 16 S 1.81398 * 109.47426 * 160.00207 * 13 11 10 17 17 O 1.42105 * 108.58037 * 294.48636 * 16 13 11 18 18 O 1.42097 * 108.57923 * 65.51083 * 16 13 11 19 19 C 1.81394 * 101.92395 * 180.02562 * 16 13 11 20 20 C 1.50695 * 109.47355 * 180.02562 * 19 16 13 21 21 H 1.08000 * 120.00288 * 359.97438 * 20 19 16 22 22 C 1.37881 * 120.00216 * 179.97438 * 20 19 16 23 23 N 1.31511 * 119.99894 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00247 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47110 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46939 * 119.99983 * 24 22 20 27 27 H 1.48500 * 109.47220 * 240.00347 * 24 22 20 28 28 H 1.09001 * 109.47308 * 60.00938 * 1 2 3 29 29 H 1.09007 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47595 * 300.00228 * 1 2 3 31 31 H 1.07998 * 120.02555 * 359.96515 * 4 3 2 32 32 H 1.08005 * 119.97015 * 180.02562 * 5 4 3 33 33 H 1.07998 * 119.94637 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.96904 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47331 * 19.99502 * 9 8 7 36 36 H 1.09001 * 109.47612 * 139.99554 * 9 8 7 37 37 H 0.96996 * 119.99660 * 359.97438 * 10 9 8 38 38 H 1.09002 * 109.47040 * 179.97438 * 15 13 11 39 39 H 1.08999 * 109.46977 * 299.99375 * 15 13 11 40 40 H 1.08999 * 109.47091 * 59.99747 * 15 13 11 41 41 H 1.09005 * 109.46946 * 299.99834 * 19 16 13 42 42 H 1.08997 * 109.47686 * 59.99544 * 19 16 13 43 43 H 0.97000 * 120.00438 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3017 3.6759 0.0016 7 6 4.0558 2.5172 0.0032 8 6 3.4311 1.2849 -0.0031 9 6 4.2537 0.0224 -0.0076 10 7 4.3210 -0.5117 -1.3702 11 6 5.0092 -1.6439 -1.6170 12 8 5.5725 -2.2209 -0.7110 13 6 5.0789 -2.1930 -3.0186 14 1 5.1977 -1.3715 -3.7251 15 6 3.7892 -2.9537 -3.3330 16 16 6.4942 -3.3191 -3.1573 17 8 7.6887 -2.5681 -2.9885 18 8 6.2596 -4.4459 -2.3239 19 6 6.3845 -3.8475 -4.8891 20 6 7.5048 -4.8084 -5.1931 21 1 8.2125 -5.0744 -4.4218 22 6 7.6266 -5.3481 -6.4560 23 7 6.7653 -5.0240 -7.3955 24 14 9.0158 -6.5387 -6.8331 25 1 9.8420 -6.7370 -5.6152 26 1 8.4479 -7.8417 -7.2630 27 1 9.8615 -5.9842 -7.9206 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2127 2.3203 -0.0015 32 1 1.3337 4.5114 0.0000 33 1 3.7920 4.6382 0.0024 34 1 5.1343 2.5754 0.0049 35 1 5.2607 0.2435 0.3461 36 1 3.7917 -0.7148 0.6491 37 1 3.8702 -0.0505 -2.0947 38 1 3.8394 -3.3505 -4.3470 39 1 3.6705 -3.7752 -2.6265 40 1 2.9387 -2.2770 -3.2497 41 1 5.4273 -4.3408 -5.0585 42 1 6.4650 -2.9772 -5.5404 43 1 6.8511 -5.4033 -8.2841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:24 Heat of formation + Delta-G solvation = -152.018556 kcal Electronic energy + Delta-G solvation = -27358.614629 eV Core-core repulsion = 23302.428371 eV Total energy + Delta-G solvation = -4056.186258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50051 -40.78992 -38.41569 -37.83973 -36.84002 -36.20704 -35.42621 -34.61989 -32.36114 -31.07325 -30.97910 -28.33414 -27.41713 -25.59958 -25.53696 -23.10402 -22.54956 -21.99378 -19.75564 -19.25150 -18.91768 -18.50189 -17.90043 -17.36821 -17.19794 -16.93051 -16.69802 -16.51622 -16.30521 -16.19576 -15.89414 -15.36722 -15.11008 -14.80914 -14.47074 -14.16842 -14.07273 -14.01286 -13.71569 -13.50863 -13.40253 -13.33312 -13.03143 -12.94824 -12.86328 -12.86100 -12.70144 -12.52396 -12.40686 -12.02347 -11.80053 -11.76997 -11.62132 -11.38275 -10.87655 -10.74840 -10.32431 -9.94092 -9.18922 -8.40164 -6.55238 -0.85341 0.20424 0.44651 1.27142 1.38145 1.39286 1.53560 1.87780 2.14964 2.33652 2.35624 2.77387 2.93154 3.02403 3.18533 3.45888 3.57277 3.76445 3.82038 3.94665 4.04139 4.24667 4.31357 4.39414 4.43315 4.51554 4.57626 4.60024 4.61614 4.74113 4.76282 4.77913 4.79153 4.98765 5.08789 5.17610 5.32572 5.38915 5.45395 5.55934 5.75852 5.82114 6.21308 6.41993 6.52181 6.91446 7.14597 8.72308 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.002432 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.465751 B =11511.455109 C =11756.828061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.133 3.867 4 C -0.214 4.214 5 C -0.070 4.070 6 C -0.162 4.162 7 C -0.068 4.068 8 C -0.159 4.159 9 C 0.169 3.831 10 N -0.690 5.690 11 C 0.539 3.461 12 O -0.577 6.577 13 C -0.602 4.602 14 H 0.195 0.805 15 C -0.136 4.136 16 S 2.419 3.581 17 O -0.991 6.991 18 O -0.977 6.977 19 C -0.411 4.411 20 C -0.565 4.565 21 H 0.054 0.946 22 C 0.031 3.969 23 N -0.903 5.903 24 Si 0.958 3.042 25 H -0.271 1.271 26 H -0.264 1.264 27 H -0.264 1.264 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.418 0.582 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.197 20.273 10.345 29.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.087 3.913 4 C -0.233 4.233 5 C -0.088 4.088 6 C -0.180 4.180 7 C -0.086 4.086 8 C -0.160 4.160 9 C 0.046 3.954 10 N -0.342 5.342 11 C 0.324 3.676 12 O -0.457 6.457 13 C -0.713 4.713 14 H 0.212 0.788 15 C -0.194 4.194 16 S 2.606 3.394 17 O -0.988 6.988 18 O -0.974 6.974 19 C -0.545 4.545 20 C -0.603 4.603 21 H 0.072 0.928 22 C -0.172 4.172 23 N -0.539 5.539 24 Si 0.781 3.219 25 H -0.196 1.196 26 H -0.189 1.189 27 H -0.188 1.188 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.255 0.745 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.196 19.451 11.527 28.406 hybrid contribution -0.153 -0.192 -0.973 1.004 sum -17.350 19.258 10.554 27.987 Atomic orbital electron populations 1.23327 0.76485 1.05242 1.02500 1.86129 1.23377 1.26969 1.88229 1.19075 0.91625 0.85172 0.95467 1.21524 1.01197 0.91842 1.08706 1.21399 0.94888 0.97805 0.94679 1.21382 0.94286 0.98870 1.03435 1.21191 1.00944 0.90797 0.95679 1.19123 0.90819 0.94824 1.11222 1.20029 0.99418 0.92804 0.83120 1.45733 1.52283 1.24493 1.11642 1.19592 0.78532 0.81145 0.88312 1.90836 1.47525 1.60051 1.47272 1.30547 1.20258 1.17655 1.02795 0.78787 1.21724 0.92669 1.00547 1.04487 1.08071 0.75948 0.75616 0.79736 1.93400 1.44863 1.73357 1.87191 1.93406 1.85935 1.50610 1.67435 1.27583 1.05932 1.06778 1.14206 1.20736 1.12577 1.28556 0.98474 0.92761 1.25689 0.98758 0.97582 0.95218 1.69978 1.36580 1.43715 1.03660 0.85497 0.78856 0.78820 0.78726 1.19590 1.18872 1.18820 0.91165 0.87346 0.91455 0.83277 0.82949 0.83483 0.84288 0.90785 0.91664 0.74480 0.88084 0.91654 0.86818 0.88303 0.88680 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.04 9.73 -92.40 -0.90 -6.94 16 3 C 0.13 2.27 6.66 22.51 0.15 2.42 16 4 C -0.21 -2.60 9.04 22.37 0.20 -2.40 16 5 C -0.07 -0.70 10.04 22.25 0.22 -0.48 16 6 C -0.16 -1.85 10.04 22.28 0.22 -1.62 16 7 C -0.07 -1.02 9.67 22.26 0.22 -0.80 16 8 C -0.16 -2.96 5.26 -19.77 -0.10 -3.07 16 9 C 0.17 4.07 5.47 85.63 0.47 4.54 16 10 N -0.69 -17.16 5.55 -466.79 -2.59 -19.75 16 11 C 0.54 18.44 7.00 87.66 0.61 19.05 16 12 O -0.58 -25.71 15.65 5.47 0.09 -25.62 16 13 C -0.60 -18.82 3.10 29.85 0.09 -18.72 16 14 H 0.19 4.23 8.14 -2.39 -0.02 4.22 16 15 C -0.14 -3.50 8.93 71.98 0.64 -2.85 16 16 S 2.42 111.58 3.59 -56.49 -0.20 111.38 16 17 O -0.99 -52.11 18.10 -127.37 -2.30 -54.42 16 18 O -0.98 -52.25 17.40 -122.76 -2.14 -54.39 16 19 C -0.41 -19.82 5.11 71.23 0.36 -19.46 16 20 C -0.56 -32.41 9.13 25.60 0.23 -32.18 16 21 H 0.05 3.22 7.71 -2.91 -0.02 3.20 16 22 C 0.03 1.72 5.46 84.66 0.46 2.18 16 23 N -0.90 -49.98 13.29 21.45 0.28 -49.70 16 24 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 26 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 28 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 29 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 31 H 0.15 1.12 6.30 -2.91 -0.02 1.10 16 32 H 0.15 0.69 8.06 -2.91 -0.02 0.66 16 33 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.14 1.83 8.04 -2.91 -0.02 1.81 16 35 H 0.07 1.84 8.00 -2.39 -0.02 1.82 16 36 H 0.07 1.79 7.85 -2.39 -0.02 1.77 16 37 H 0.42 7.65 8.46 -92.71 -0.78 6.87 16 38 H 0.10 2.40 6.56 -2.39 -0.02 2.39 16 39 H 0.06 1.91 8.06 -2.39 -0.02 1.89 16 40 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 4.49 6.87 -2.39 -0.02 4.47 16 42 H 0.10 4.32 8.14 -2.39 -0.02 4.30 16 43 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -85.86 379.04 -0.58 -86.45 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.25 Total: 19.59 kcal Atomic # 6 Polarization: -56.99 SS G_CDS: 4.90 Total: -52.09 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -2.30 Total: -69.45 kcal Atomic # 8 Polarization: -136.11 SS G_CDS: -5.25 Total: -141.37 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 111.58 SS G_CDS: -0.20 Total: 111.38 kcal Total: -85.86 -0.58 -86.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.573 kcal (2) G-P(sol) polarization free energy of solvation -85.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds