Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99864 * 2 1 4 4 C 1.38744 * 120.05962 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94541 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05390 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11305 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.96896 * 180.27455 * 7 6 5 9 9 N 1.46502 * 109.47208 * 269.72416 * 8 7 6 10 10 C 1.34769 * 120.00419 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99738 * 0.02562 * 10 9 8 12 12 C 1.50693 * 120.00399 * 180.02562 * 10 9 8 13 13 H 1.08997 * 109.47437 * 39.99698 * 12 10 9 14 14 C 1.52999 * 109.47233 * 279.99476 * 12 10 9 15 15 S 1.81402 * 109.47431 * 159.99894 * 12 10 9 16 16 O 1.42100 * 108.57895 * 294.49055 * 15 12 10 17 17 O 1.42101 * 108.57799 * 65.51225 * 15 12 10 18 18 C 1.81394 * 101.92505 * 179.97438 * 15 12 10 19 19 C 1.50699 * 109.47222 * 179.97438 * 18 15 12 20 20 H 1.07995 * 120.00230 * 0.02562 * 19 18 15 21 21 C 1.37879 * 119.99961 * 180.02562 * 19 18 15 22 22 N 1.31519 * 120.00084 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46954 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46959 * 119.99703 * 23 21 19 26 26 H 1.48498 * 109.47320 * 239.99797 * 23 21 19 27 27 C 1.38165 * 120.05319 * 359.97438 * 7 6 5 28 28 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47328 * 300.00710 * 1 2 3 30 30 H 1.09001 * 109.47056 * 60.00369 * 1 2 3 31 31 H 1.08001 * 120.02701 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96991 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.93990 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47382 * 29.72704 * 8 7 6 35 35 H 1.08997 * 109.46933 * 149.72643 * 8 7 6 36 36 H 0.97006 * 119.99581 * 0.02562 * 9 8 7 37 37 H 1.09004 * 109.46725 * 60.00079 * 14 12 10 38 38 H 1.08999 * 109.47403 * 179.97438 * 14 12 10 39 39 H 1.08994 * 109.47816 * 300.00410 * 14 12 10 40 40 H 1.09002 * 109.47508 * 300.00404 * 18 15 12 41 41 H 1.09010 * 109.46986 * 59.99881 * 18 15 12 42 42 H 0.96998 * 120.00346 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.02356 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0561 2.5170 0.0011 8 6 5.5608 2.5980 0.0079 9 7 6.0549 2.6223 -1.3711 10 6 7.3791 2.6927 -1.6114 11 8 8.1619 2.7355 -0.6860 12 6 7.8872 2.7181 -3.0298 13 1 7.2346 3.3440 -3.6384 14 6 7.8996 1.2955 -3.5928 15 16 9.5705 3.3938 -3.0572 16 8 9.5187 4.7549 -2.6524 17 8 10.4296 2.4969 -2.3667 18 6 9.9710 3.3307 -4.8252 19 6 11.3629 3.8651 -5.0444 20 1 11.9483 4.2079 -4.2041 21 6 11.8892 3.9163 -6.3178 22 7 11.1762 3.4993 -7.3412 23 14 13.6148 4.5780 -6.5894 24 1 14.2020 4.9791 -5.2857 25 1 14.4577 3.5234 -7.2078 26 1 13.5568 5.7570 -7.4904 27 6 3.4311 1.2847 0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2129 2.3203 0.0005 32 1 1.3341 4.5113 0.0019 33 1 3.7923 4.6380 0.0024 34 1 5.8734 3.5070 0.5219 35 1 5.9691 1.7297 0.5249 36 1 5.4288 2.5876 -2.1112 37 1 6.8881 0.8895 -3.5764 38 1 8.2667 1.3140 -4.6189 39 1 8.5522 0.6695 -2.9843 40 1 9.9185 2.2990 -5.1732 41 1 9.2571 3.9384 -5.3814 42 1 11.5465 3.5349 -8.2370 43 1 4.0206 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -123.810404 kcal Electronic energy + Delta-G solvation = -26787.638193 eV Core-core repulsion = 22732.675133 eV Total energy + Delta-G solvation = -4054.963061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65434 -39.77698 -38.04949 -35.97279 -35.08152 -34.86593 -33.53959 -33.17937 -31.56775 -30.69498 -29.02492 -27.82531 -26.53605 -24.41519 -23.55074 -22.96298 -21.56415 -20.75435 -18.56654 -17.84055 -17.35601 -16.96870 -16.73574 -16.41418 -16.27719 -16.14547 -15.53626 -15.38144 -15.10538 -14.72296 -14.44830 -14.27120 -14.12712 -13.80695 -13.49411 -13.09745 -12.95640 -12.65124 -12.55784 -12.41035 -12.30532 -11.96098 -11.92436 -11.74960 -11.55432 -11.35935 -11.25694 -11.04533 -10.98595 -10.89195 -10.58239 -10.17123 -10.01459 -9.75109 -9.33495 -9.26193 -9.04723 -8.70334 -8.63211 -6.32890 -4.41520 0.74889 0.90199 1.02680 2.54395 2.79605 2.96194 3.22456 3.29541 3.38117 3.45515 3.81536 4.23969 4.25279 4.35000 4.44519 4.58310 4.61684 4.64800 4.67752 4.87597 4.90611 4.91797 5.01505 5.02809 5.07257 5.12583 5.33152 5.36915 5.47427 5.60424 5.62527 5.76056 5.84401 5.99760 6.10032 6.17132 6.20520 6.29553 6.64429 6.68779 6.94763 7.26436 7.50462 7.75331 8.05167 8.60584 9.25413 10.79035 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.002129 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.966913 B =13145.843928 C =13416.028334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.124 3.876 4 C -0.202 4.202 5 C -0.081 4.081 6 C -0.137 4.137 7 C -0.068 4.068 8 C 0.157 3.843 9 N -0.720 5.720 10 C 0.547 3.453 11 O -0.522 6.522 12 C -0.632 4.632 13 H 0.149 0.851 14 C -0.133 4.133 15 S 2.419 3.581 16 O -0.949 6.949 17 O -0.932 6.932 18 C -0.405 4.405 19 C -0.527 4.527 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.882 5.882 23 Si 0.906 3.094 24 H -0.265 1.265 25 H -0.278 1.278 26 H -0.278 1.278 27 C -0.132 4.132 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.404 0.596 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.268 0.732 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.695 -5.088 10.506 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.079 3.921 4 C -0.221 4.221 5 C -0.099 4.099 6 C -0.155 4.155 7 C -0.068 4.068 8 C 0.034 3.966 9 N -0.373 5.373 10 C 0.332 3.668 11 O -0.398 6.398 12 C -0.736 4.736 13 H 0.167 0.833 14 C -0.191 4.191 15 S 2.599 3.401 16 O -0.947 6.947 17 O -0.929 6.929 18 C -0.540 4.540 19 C -0.566 4.566 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.518 5.518 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.204 1.204 27 C -0.151 4.151 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.239 0.761 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.631 -5.015 11.790 26.881 hybrid contribution -0.663 0.183 -1.306 1.476 sum -24.294 -4.832 10.484 26.897 Atomic orbital electron populations 1.23074 0.78228 1.04115 1.01367 1.86091 1.21496 1.26799 1.88669 1.18989 0.92226 0.84289 0.96603 1.21306 1.00152 0.92437 1.08195 1.20963 0.94499 0.97128 0.97321 1.21091 0.93794 0.98255 1.02385 1.19660 0.94889 0.92613 0.99654 1.20268 0.88467 1.03963 0.83864 1.45886 1.06908 1.76020 1.08466 1.19481 0.82564 0.75639 0.89133 1.90857 1.55072 1.48673 1.45191 1.30988 1.30741 1.11095 1.00752 0.83338 1.21556 1.04313 0.90444 1.02746 1.08720 0.74826 0.75074 0.81477 1.93461 1.84979 1.33297 1.82913 1.93467 1.59982 1.66343 1.73157 1.27619 1.06613 1.06820 1.12899 1.20410 0.96651 1.44780 0.94778 0.90852 1.24929 0.98622 0.94241 0.95332 1.69950 1.37370 1.45160 0.99366 0.86287 0.82808 0.78765 0.78950 1.18878 1.20347 1.20380 1.20373 0.91428 0.98298 1.05023 0.88108 0.92616 0.92564 0.85381 0.85420 0.85295 0.89808 0.89999 0.76093 0.91031 0.89125 0.90115 0.89317 0.89687 0.92283 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.74 10.50 -19.42 -0.20 -2.94 16 3 C 0.12 1.10 6.69 -39.22 -0.26 0.84 16 4 C -0.20 -1.49 9.04 -39.44 -0.36 -1.85 16 5 C -0.08 -0.58 10.04 -39.61 -0.40 -0.98 16 6 C -0.14 -1.12 9.70 -39.56 -0.38 -1.50 16 7 C -0.07 -0.61 5.25 -104.65 -0.55 -1.16 16 8 C 0.16 1.69 5.80 -5.19 -0.03 1.66 16 9 N -0.72 -8.58 5.55 -61.48 -0.34 -8.92 16 10 C 0.55 9.00 7.00 -10.99 -0.08 8.92 16 11 O -0.52 -10.84 15.65 -3.36 -0.05 -10.89 16 12 C -0.63 -9.92 3.11 -27.89 -0.09 -10.01 16 13 H 0.15 1.78 8.14 -51.93 -0.42 1.36 16 14 C -0.13 -1.77 8.92 37.16 0.33 -1.44 16 15 S 2.42 53.22 3.59 -107.50 -0.39 52.83 16 16 O -0.95 -23.65 18.10 -57.83 -1.05 -24.70 16 17 O -0.93 -23.38 17.40 -62.66 -1.09 -24.47 16 18 C -0.40 -9.51 5.11 36.00 0.18 -9.32 16 19 C -0.53 -14.62 9.13 -34.44 -0.31 -14.94 16 20 H 0.07 2.05 7.71 -52.49 -0.40 1.65 16 21 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16 22 N -0.88 -24.46 13.29 55.43 0.74 -23.73 16 23 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.13 -1.22 9.64 -39.43 -0.38 -1.60 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.13 0.67 6.30 -52.49 -0.33 0.33 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.40 3.74 8.46 -40.82 -0.35 3.39 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.15 6.56 -51.93 -0.34 0.81 16 39 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 40 H 0.09 1.98 6.87 -51.92 -0.36 1.62 16 41 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -37.59 380.12 -9.03 -46.62 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.93 Total: 2.72 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: -1.43 Total: -28.33 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.40 Total: -32.65 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -2.39 Total: -63.01 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 53.22 SS G_CDS: -0.39 Total: 52.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.59 -9.03 -46.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.194 kcal (2) G-P(sol) polarization free energy of solvation -37.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds