Wall clock time and date at job start Sat Apr 11 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99864 * 2 1 4 4 C 1.38744 * 120.05962 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94541 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05390 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11305 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.96896 * 180.27455 * 7 6 5 9 9 N 1.46502 * 109.47208 * 269.72416 * 8 7 6 10 10 C 1.34769 * 120.00419 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99738 * 0.02562 * 10 9 8 12 12 C 1.50693 * 120.00399 * 180.02562 * 10 9 8 13 13 H 1.08997 * 109.47437 * 39.99698 * 12 10 9 14 14 C 1.52999 * 109.47233 * 279.99476 * 12 10 9 15 15 S 1.81402 * 109.47431 * 159.99894 * 12 10 9 16 16 O 1.42100 * 108.57895 * 294.49055 * 15 12 10 17 17 O 1.42101 * 108.57799 * 65.51225 * 15 12 10 18 18 C 1.81394 * 101.92505 * 179.97438 * 15 12 10 19 19 C 1.50699 * 109.47222 * 179.97438 * 18 15 12 20 20 H 1.07995 * 120.00230 * 0.02562 * 19 18 15 21 21 C 1.37879 * 119.99961 * 180.02562 * 19 18 15 22 22 N 1.31519 * 120.00084 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46954 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46959 * 119.99703 * 23 21 19 26 26 H 1.48498 * 109.47320 * 239.99797 * 23 21 19 27 27 C 1.38165 * 120.05319 * 359.97438 * 7 6 5 28 28 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47328 * 300.00710 * 1 2 3 30 30 H 1.09001 * 109.47056 * 60.00369 * 1 2 3 31 31 H 1.08001 * 120.02701 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96991 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.93990 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47382 * 29.72704 * 8 7 6 35 35 H 1.08997 * 109.46933 * 149.72643 * 8 7 6 36 36 H 0.97006 * 119.99581 * 0.02562 * 9 8 7 37 37 H 1.09004 * 109.46725 * 60.00079 * 14 12 10 38 38 H 1.08999 * 109.47403 * 179.97438 * 14 12 10 39 39 H 1.08994 * 109.47816 * 300.00410 * 14 12 10 40 40 H 1.09002 * 109.47508 * 300.00404 * 18 15 12 41 41 H 1.09010 * 109.46986 * 59.99881 * 18 15 12 42 42 H 0.96998 * 120.00346 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.02356 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0561 2.5170 0.0011 8 6 5.5608 2.5980 0.0079 9 7 6.0549 2.6223 -1.3711 10 6 7.3791 2.6927 -1.6114 11 8 8.1619 2.7355 -0.6860 12 6 7.8872 2.7181 -3.0298 13 1 7.2346 3.3440 -3.6384 14 6 7.8996 1.2955 -3.5928 15 16 9.5705 3.3938 -3.0572 16 8 9.5187 4.7549 -2.6524 17 8 10.4296 2.4969 -2.3667 18 6 9.9710 3.3307 -4.8252 19 6 11.3629 3.8651 -5.0444 20 1 11.9483 4.2079 -4.2041 21 6 11.8892 3.9163 -6.3178 22 7 11.1762 3.4993 -7.3412 23 14 13.6148 4.5780 -6.5894 24 1 14.2020 4.9791 -5.2857 25 1 14.4577 3.5234 -7.2078 26 1 13.5568 5.7570 -7.4904 27 6 3.4311 1.2847 0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2129 2.3203 0.0005 32 1 1.3341 4.5113 0.0019 33 1 3.7923 4.6380 0.0024 34 1 5.8734 3.5070 0.5219 35 1 5.9691 1.7297 0.5249 36 1 5.4288 2.5876 -2.1112 37 1 6.8881 0.8895 -3.5764 38 1 8.2667 1.3140 -4.6189 39 1 8.5522 0.6695 -2.9843 40 1 9.9185 2.2990 -5.1732 41 1 9.2571 3.9384 -5.3814 42 1 11.5465 3.5349 -8.2370 43 1 4.0206 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:31 Heat of formation + Delta-G solvation = -152.613509 kcal Electronic energy + Delta-G solvation = -26788.887190 eV Core-core repulsion = 22732.675133 eV Total energy + Delta-G solvation = -4056.212057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39664 -40.86932 -38.70208 -37.82687 -36.82255 -36.03481 -35.41382 -34.57942 -32.30857 -31.32945 -30.96721 -28.29188 -27.37470 -25.58499 -25.52002 -23.55694 -22.23191 -22.01434 -19.77246 -19.26597 -18.80018 -18.41534 -17.73415 -17.35748 -17.19034 -16.99663 -16.88494 -16.66207 -16.45307 -16.23150 -15.98439 -15.22240 -15.14165 -14.65442 -14.47184 -14.16705 -14.14434 -14.05764 -13.65554 -13.55288 -13.39380 -13.31710 -13.01922 -12.93668 -12.84914 -12.84489 -12.69913 -12.56026 -12.51916 -12.04183 -11.81239 -11.76637 -11.61089 -11.38076 -10.86682 -10.74496 -10.35881 -9.96909 -9.22440 -8.39795 -6.54708 -0.84379 0.13776 0.42569 1.25510 1.38249 1.39553 1.53685 1.85232 2.15459 2.33173 2.34301 2.74314 2.93589 3.02890 3.19641 3.45753 3.55576 3.77468 3.83068 3.96037 4.05736 4.17501 4.28475 4.33794 4.40146 4.48890 4.58033 4.61274 4.64660 4.72004 4.75159 4.77487 4.79249 4.99625 5.10314 5.14662 5.27006 5.39489 5.42214 5.54164 5.72178 5.76641 6.19875 6.42124 6.52972 6.89616 7.15068 8.72509 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.002129 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.966913 B =13145.843928 C =13416.028334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.112 3.888 4 C -0.199 4.199 5 C -0.080 4.080 6 C -0.143 4.143 7 C -0.071 4.071 8 C 0.156 3.844 9 N -0.694 5.694 10 C 0.540 3.460 11 O -0.574 6.574 12 C -0.602 4.602 13 H 0.196 0.804 14 C -0.139 4.139 15 S 2.420 3.580 16 O -0.990 6.990 17 O -0.976 6.976 18 C -0.412 4.412 19 C -0.565 4.565 20 H 0.055 0.945 21 C 0.030 3.970 22 N -0.902 5.902 23 Si 0.958 3.042 24 H -0.271 1.271 25 H -0.265 1.265 26 H -0.264 1.264 27 C -0.145 4.145 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.421 0.579 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.275 0.725 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.685 -5.221 9.740 29.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.067 3.933 4 C -0.218 4.218 5 C -0.098 4.098 6 C -0.161 4.161 7 C -0.071 4.071 8 C 0.034 3.966 9 N -0.346 5.346 10 C 0.325 3.675 11 O -0.453 6.453 12 C -0.713 4.713 13 H 0.213 0.787 14 C -0.197 4.197 15 S 2.607 3.393 16 O -0.988 6.988 17 O -0.974 6.974 18 C -0.546 4.546 19 C -0.603 4.603 20 H 0.073 0.927 21 C -0.174 4.174 22 N -0.539 5.539 23 Si 0.781 3.219 24 H -0.196 1.196 25 H -0.190 1.190 26 H -0.189 1.189 27 C -0.164 4.164 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.259 0.741 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.606 -5.128 10.986 29.238 hybrid contribution 0.029 0.152 -1.018 1.029 sum -26.576 -4.976 9.969 28.817 Atomic orbital electron populations 1.23348 0.76324 1.05546 1.02386 1.86063 1.23569 1.26944 1.88688 1.19139 0.92259 0.85017 0.96863 1.21604 1.01361 0.91899 1.06894 1.21269 0.94209 0.98099 0.96189 1.21260 0.94477 0.98162 1.02249 1.19428 0.93536 0.93100 1.01061 1.20319 0.89842 1.03606 0.82860 1.45727 1.05478 1.73583 1.09860 1.19579 0.83676 0.75616 0.88604 1.90851 1.56601 1.51395 1.46488 1.30543 1.25463 1.13192 1.02057 0.78657 1.21748 1.06859 0.88392 1.02656 1.08048 0.77098 0.74108 0.80056 1.93402 1.86760 1.35627 1.82978 1.93409 1.63686 1.66832 1.73436 1.27587 1.04991 1.07159 1.14817 1.20745 0.98900 1.45850 0.94817 0.92718 1.25698 1.02215 0.94362 0.95087 1.69981 1.38723 1.45445 0.99768 0.85492 0.78706 0.78943 0.78723 1.19555 1.18960 1.18896 1.20414 0.92045 0.98196 1.05792 0.86666 0.91533 0.91497 0.83100 0.82961 0.84587 0.90206 0.90457 0.74098 0.86593 0.88197 0.91558 0.88346 0.88714 0.91614 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.30 10.50 -92.41 -0.97 -6.27 16 3 C 0.11 1.79 6.69 22.50 0.15 1.94 16 4 C -0.20 -2.37 9.04 22.36 0.20 -2.17 16 5 C -0.08 -0.91 10.04 22.25 0.22 -0.69 16 6 C -0.14 -2.03 9.70 22.28 0.22 -1.81 16 7 C -0.07 -1.18 5.25 -19.88 -0.10 -1.28 16 8 C 0.16 3.22 5.80 85.63 0.50 3.71 16 9 N -0.69 -15.16 5.55 -466.80 -2.59 -17.75 16 10 C 0.54 17.19 7.00 87.66 0.61 17.81 16 11 O -0.57 -24.21 15.65 5.47 0.09 -24.12 16 12 C -0.60 -17.81 3.11 29.85 0.09 -17.71 16 13 H 0.20 3.94 8.14 -2.39 -0.02 3.92 16 14 C -0.14 -3.36 8.92 71.98 0.64 -2.72 16 15 S 2.42 108.68 3.59 -56.49 -0.20 108.47 16 16 O -0.99 -50.91 18.10 -127.37 -2.31 -53.22 16 17 O -0.98 -51.09 17.40 -122.76 -2.14 -53.22 16 18 C -0.41 -19.55 5.11 71.24 0.36 -19.18 16 19 C -0.56 -32.11 9.13 25.60 0.23 -31.88 16 20 H 0.05 3.21 7.71 -2.91 -0.02 3.19 16 21 C 0.03 1.64 5.46 84.65 0.46 2.11 16 22 N -0.90 -49.75 13.29 21.45 0.28 -49.46 16 23 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 C -0.15 -2.51 9.64 22.37 0.22 -2.29 16 28 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 30 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 31 H 0.15 1.03 6.30 -2.91 -0.02 1.01 16 32 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 36 H 0.42 6.37 8.46 -92.70 -0.78 5.59 16 37 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.10 2.28 6.56 -2.39 -0.02 2.27 16 39 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 40 H 0.10 4.40 6.87 -2.39 -0.02 4.39 16 41 H 0.09 4.24 8.14 -2.39 -0.02 4.22 16 42 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -84.75 380.12 -0.64 -85.38 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.25 Total: 17.78 kcal Atomic # 6 Polarization: -57.83 SS G_CDS: 4.92 Total: -52.91 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -2.30 Total: -67.22 kcal Atomic # 8 Polarization: -131.50 SS G_CDS: -5.32 Total: -136.83 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 108.68 SS G_CDS: -0.20 Total: 108.47 kcal Total: -84.75 -0.64 -85.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.232 kcal (2) G-P(sol) polarization free energy of solvation -84.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds