Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35794 * 117.00207 * 2 1 4 4 C 1.38572 * 119.87797 * 0.02562 * 3 2 1 5 5 C 1.38462 * 120.11809 * 179.97438 * 4 3 2 6 6 O 1.35738 * 120.05979 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99673 * 359.97372 * 6 5 4 8 8 C 1.40288 * 119.88010 * 359.97438 * 5 4 3 9 9 C 1.47141 * 120.11602 * 180.02562 * 8 5 4 10 10 O 1.21543 * 120.00179 * 0.02562 * 9 8 5 11 11 O 1.34786 * 119.99961 * 179.97438 * 9 8 5 12 12 C 1.45200 * 117.00251 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47003 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46623 * 179.97438 * 13 12 11 15 15 S 1.81009 * 109.46959 * 179.97438 * 14 13 12 16 16 C 1.76195 * 99.99991 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99979 * 0.02562 * 16 15 14 18 18 C 1.38799 * 119.99978 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00176 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99847 * 0.02562 * 18 16 15 21 21 H 1.48490 * 109.47163 * 89.99845 * 20 18 16 22 22 H 1.48500 * 109.47138 * 209.99964 * 20 18 16 23 23 H 1.48498 * 109.46959 * 329.99769 * 20 18 16 24 24 C 1.39980 * 119.76281 * 0.27687 * 8 5 4 25 25 C 1.38065 * 119.87491 * 359.42162 * 24 8 5 26 26 N 1.40223 * 119.93875 * 180.31922 * 25 24 8 27 27 H 1.08998 * 109.47485 * 59.99685 * 1 2 3 28 28 H 1.09003 * 109.47301 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46841 * 300.00005 * 1 2 3 30 30 H 1.08000 * 119.94211 * 359.97438 * 4 3 2 31 31 H 1.08993 * 109.47244 * 300.00118 * 7 6 5 32 32 H 1.09006 * 109.46697 * 60.00459 * 7 6 5 33 33 H 1.09000 * 109.46485 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47475 * 60.00235 * 12 11 9 35 35 H 1.09000 * 109.47147 * 300.00028 * 12 11 9 36 36 H 1.09000 * 109.47050 * 299.99913 * 13 12 11 37 37 H 1.09001 * 109.46801 * 60.00026 * 13 12 11 38 38 H 1.09000 * 109.47486 * 299.99829 * 14 13 12 39 39 H 1.09001 * 109.47362 * 60.00551 * 14 13 12 40 40 H 0.97000 * 120.00349 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.05919 * 179.70137 * 24 8 5 42 42 H 0.96991 * 119.99953 * 180.27941 * 26 25 24 43 43 H 0.96998 * 119.99977 * 0.27902 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2884 2.3705 0.0005 5 6 1.9118 3.6068 0.0011 6 8 1.1690 4.7429 0.0021 7 6 -0.2517 4.5890 0.0020 8 6 3.3126 3.6831 0.0016 9 6 3.9806 4.9942 0.0028 10 8 3.3186 6.0135 0.0037 11 8 5.3266 5.0648 0.0038 12 6 5.9172 6.3912 0.0055 13 6 7.4425 6.2704 0.0058 14 6 8.0647 7.6681 0.0069 15 16 9.8692 7.5252 0.0081 16 6 10.3111 9.2308 0.0100 17 1 9.5412 9.9882 0.0106 18 6 11.6488 9.6011 0.0119 19 7 11.9790 10.8753 0.0138 20 14 12.9805 8.2911 0.0116 21 1 13.3348 7.9457 -1.3884 22 1 14.1830 8.8075 0.7136 23 1 12.4824 7.0788 0.7097 24 6 4.0726 2.5076 -0.0043 25 6 3.4406 1.2801 0.0015 26 7 4.2006 0.1017 0.0024 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2100 2.3106 0.0005 31 1 -0.5576 4.0399 -0.8883 32 1 -0.5575 4.0383 0.8917 33 1 -0.7235 5.5716 0.0034 34 1 5.5950 6.9313 0.8957 35 1 5.5962 6.9330 -0.8842 36 1 7.7638 5.7284 0.8953 37 1 7.7643 5.7304 -0.8847 38 1 7.7434 8.2096 -0.8828 39 1 7.7429 8.2084 0.8972 40 1 12.9139 11.1341 0.0148 41 1 5.1513 2.5608 -0.0087 42 1 3.7575 -0.7611 0.0024 43 1 5.1694 0.1494 0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909898841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -139.737151 kcal Electronic energy + Delta-G solvation = -26201.112949 eV Core-core repulsion = 22145.459252 eV Total energy + Delta-G solvation = -4055.653696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19397 -40.00785 -39.15405 -37.38253 -36.41146 -34.16032 -33.48274 -32.42929 -31.08029 -29.01772 -28.42505 -27.15420 -26.35521 -25.57720 -23.88573 -22.46716 -21.37231 -20.94200 -19.19293 -18.25939 -17.61742 -17.34990 -16.89299 -16.70330 -16.61320 -16.31084 -15.96212 -15.83159 -15.11651 -14.99320 -14.81764 -14.58032 -14.57725 -13.97175 -13.44632 -13.41668 -12.98329 -12.76903 -12.69699 -12.51448 -12.35886 -12.03261 -11.98742 -11.81993 -11.58463 -11.46839 -11.13126 -11.03861 -10.91099 -10.49946 -10.23406 -10.14657 -10.13835 -9.79420 -9.09655 -8.99880 -8.57889 -7.46191 -6.94683 -6.27289 -4.00219 0.47134 1.11884 2.53496 2.60833 2.66344 2.94062 3.06661 3.31173 3.46099 3.49071 3.55258 3.60656 4.23467 4.32257 4.42512 4.56380 4.60435 4.66493 4.79078 4.79350 4.82633 4.89345 4.97592 5.10921 5.15183 5.15568 5.19028 5.28004 5.41749 5.48848 5.53345 5.68527 5.76303 5.90384 6.09082 6.13055 6.40446 6.49985 6.57974 6.66451 6.99598 7.23721 7.52698 7.91772 7.96345 8.46022 9.18146 10.82121 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.001891 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.222654 B =14800.357739 C =16062.225740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.129 3.871 4 C -0.271 4.271 5 C 0.177 3.823 6 O -0.282 6.282 7 C 0.022 3.978 8 C -0.147 4.147 9 C 0.509 3.491 10 O -0.492 6.492 11 O -0.356 6.356 12 C 0.075 3.925 13 C -0.100 4.100 14 C -0.084 4.084 15 S -0.207 6.207 16 C -0.504 4.504 17 H 0.089 0.911 18 C 0.092 3.908 19 N -0.881 5.881 20 Si 0.862 3.138 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.237 1.237 24 C -0.073 4.073 25 C 0.148 3.852 26 N -0.876 5.876 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.143 0.857 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.270 0.730 41 H 0.153 0.847 42 H 0.402 0.598 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.709 -25.031 0.044 36.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.080 3.920 4 C -0.291 4.291 5 C 0.128 3.872 6 O -0.193 6.193 7 C -0.073 4.073 8 C -0.150 4.150 9 C 0.354 3.646 10 O -0.380 6.380 11 O -0.273 6.273 12 C 0.000 4.000 13 C -0.139 4.139 14 C -0.232 4.232 15 S 0.020 5.980 16 C -0.652 4.652 17 H 0.107 0.893 18 C -0.117 4.117 19 N -0.517 5.517 20 Si 0.687 3.313 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.161 1.161 24 C -0.097 4.097 25 C 0.045 3.955 26 N -0.420 5.420 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.171 0.829 42 H 0.230 0.770 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -25.977 -25.387 0.048 36.323 hybrid contribution -0.406 0.629 -0.033 0.750 sum -26.383 -24.758 0.015 36.180 Atomic orbital electron populations 1.23095 0.77918 1.04201 1.01533 1.85956 1.21741 1.26358 1.88548 1.18436 0.90283 0.84331 0.98991 1.20959 1.00528 0.90899 1.16670 1.18456 0.89413 0.85236 0.94077 1.86388 1.18303 1.27437 1.87170 1.23137 0.79057 1.04200 1.00894 1.18089 0.89513 0.91336 1.16030 1.20637 0.80975 0.89234 0.73802 1.90887 1.65701 1.36444 1.44952 1.86496 1.21449 1.35033 1.84321 1.23173 0.93530 0.80534 1.02786 1.21320 0.90739 0.97531 1.04295 1.22950 0.98427 0.97595 1.04249 1.84137 1.01008 1.15266 1.97554 1.22132 0.96316 0.88210 1.58500 0.89299 1.24793 0.98031 0.95496 0.93332 1.69937 1.18489 1.15144 1.48178 0.86668 0.81786 0.83175 0.79710 1.19346 1.20090 1.16135 1.20609 1.00480 0.88246 1.00345 1.16849 0.87103 0.88152 1.03373 1.42201 1.08214 1.04797 1.86770 0.92472 0.87945 0.92480 0.83955 0.92776 0.92785 0.87863 0.91057 0.91068 0.90302 0.90319 0.91004 0.90966 0.91960 0.82917 0.76982 0.77035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.23 9.72 -19.09 -0.19 -2.42 16 3 C 0.13 1.12 6.71 -38.92 -0.26 0.86 16 4 C -0.27 -2.33 8.00 -39.38 -0.32 -2.64 16 5 C 0.18 2.02 6.70 -38.73 -0.26 1.76 16 6 O -0.28 -3.39 8.55 -40.90 -0.35 -3.74 16 7 C 0.02 0.15 9.81 101.05 0.99 1.14 16 8 C -0.15 -1.84 5.89 -104.86 -0.62 -2.45 16 9 C 0.51 7.66 7.88 34.34 0.27 7.94 16 10 O -0.49 -8.66 14.93 -26.65 -0.40 -9.06 16 11 O -0.36 -5.17 9.46 -40.73 -0.39 -5.55 16 12 C 0.07 1.11 5.48 37.16 0.20 1.31 16 13 C -0.10 -1.59 5.60 -26.73 -0.15 -1.73 16 14 C -0.08 -1.64 5.67 37.16 0.21 -1.42 16 15 S -0.21 -5.06 19.41 -107.50 -2.09 -7.15 16 16 C -0.50 -14.71 10.04 30.94 0.31 -14.40 16 17 H 0.09 2.76 8.03 -52.49 -0.42 2.34 16 18 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 19 N -0.88 -26.85 13.97 55.49 0.78 -26.07 16 20 Si 0.86 21.55 27.74 -169.99 -4.72 16.84 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.24 -5.80 6.74 56.52 0.38 -5.41 16 24 C -0.07 -0.75 9.44 -38.99 -0.37 -1.11 16 25 C 0.15 1.33 6.76 -83.54 -0.56 0.77 16 26 N -0.88 -5.73 9.10 32.51 0.30 -5.43 16 27 H 0.06 0.17 7.65 -51.93 -0.40 -0.23 16 28 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.17 7.65 -51.93 -0.40 -0.23 16 30 H 0.14 0.83 4.48 -52.49 -0.24 0.59 16 31 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 32 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.40 8.14 -51.92 -0.42 0.97 16 39 H 0.07 1.40 8.14 -51.91 -0.42 0.98 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.15 1.39 7.60 -52.49 -0.40 0.99 16 42 H 0.40 2.24 8.18 -40.82 -0.33 1.91 16 43 H 0.40 2.01 8.84 -40.82 -0.36 1.64 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -35.45 378.30 -6.88 -42.33 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.88 Total: 0.84 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.35 Total: -6.29 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 1.07 Total: -31.51 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.32 Total: -20.77 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -2.09 Total: -7.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.45 -6.88 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909898841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.404 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds