Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35794 * 117.00207 * 2 1 4 4 C 1.38572 * 119.87797 * 0.02562 * 3 2 1 5 5 C 1.38462 * 120.11809 * 179.97438 * 4 3 2 6 6 O 1.35738 * 120.05979 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99673 * 359.97372 * 6 5 4 8 8 C 1.40288 * 119.88010 * 359.97438 * 5 4 3 9 9 C 1.47141 * 120.11602 * 180.02562 * 8 5 4 10 10 O 1.21543 * 120.00179 * 0.02562 * 9 8 5 11 11 O 1.34786 * 119.99961 * 179.97438 * 9 8 5 12 12 C 1.45200 * 117.00251 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47003 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46623 * 179.97438 * 13 12 11 15 15 S 1.81009 * 109.46959 * 179.97438 * 14 13 12 16 16 C 1.76195 * 99.99991 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99979 * 0.02562 * 16 15 14 18 18 C 1.38799 * 119.99978 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00176 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99847 * 0.02562 * 18 16 15 21 21 H 1.48490 * 109.47163 * 89.99845 * 20 18 16 22 22 H 1.48500 * 109.47138 * 209.99964 * 20 18 16 23 23 H 1.48498 * 109.46959 * 329.99769 * 20 18 16 24 24 C 1.39980 * 119.76281 * 0.27687 * 8 5 4 25 25 C 1.38065 * 119.87491 * 359.42162 * 24 8 5 26 26 N 1.40223 * 119.93875 * 180.31922 * 25 24 8 27 27 H 1.08998 * 109.47485 * 59.99685 * 1 2 3 28 28 H 1.09003 * 109.47301 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46841 * 300.00005 * 1 2 3 30 30 H 1.08000 * 119.94211 * 359.97438 * 4 3 2 31 31 H 1.08993 * 109.47244 * 300.00118 * 7 6 5 32 32 H 1.09006 * 109.46697 * 60.00459 * 7 6 5 33 33 H 1.09000 * 109.46485 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47475 * 60.00235 * 12 11 9 35 35 H 1.09000 * 109.47147 * 300.00028 * 12 11 9 36 36 H 1.09000 * 109.47050 * 299.99913 * 13 12 11 37 37 H 1.09001 * 109.46801 * 60.00026 * 13 12 11 38 38 H 1.09000 * 109.47486 * 299.99829 * 14 13 12 39 39 H 1.09001 * 109.47362 * 60.00551 * 14 13 12 40 40 H 0.97000 * 120.00349 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.05919 * 179.70137 * 24 8 5 42 42 H 0.96991 * 119.99953 * 180.27941 * 26 25 24 43 43 H 0.96998 * 119.99977 * 0.27902 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2884 2.3705 0.0005 5 6 1.9118 3.6068 0.0011 6 8 1.1690 4.7429 0.0021 7 6 -0.2517 4.5890 0.0020 8 6 3.3126 3.6831 0.0016 9 6 3.9806 4.9942 0.0028 10 8 3.3186 6.0135 0.0037 11 8 5.3266 5.0648 0.0038 12 6 5.9172 6.3912 0.0055 13 6 7.4425 6.2704 0.0058 14 6 8.0647 7.6681 0.0069 15 16 9.8692 7.5252 0.0081 16 6 10.3111 9.2308 0.0100 17 1 9.5412 9.9882 0.0106 18 6 11.6488 9.6011 0.0119 19 7 11.9790 10.8753 0.0138 20 14 12.9805 8.2911 0.0116 21 1 13.3348 7.9457 -1.3884 22 1 14.1830 8.8075 0.7136 23 1 12.4824 7.0788 0.7097 24 6 4.0726 2.5076 -0.0043 25 6 3.4406 1.2801 0.0015 26 7 4.2006 0.1017 0.0024 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2100 2.3106 0.0005 31 1 -0.5576 4.0399 -0.8883 32 1 -0.5575 4.0383 0.8917 33 1 -0.7235 5.5716 0.0034 34 1 5.5950 6.9313 0.8957 35 1 5.5962 6.9330 -0.8842 36 1 7.7638 5.7284 0.8953 37 1 7.7643 5.7304 -0.8847 38 1 7.7434 8.2096 -0.8828 39 1 7.7429 8.2084 0.8972 40 1 12.9139 11.1341 0.0148 41 1 5.1513 2.5608 -0.0087 42 1 3.7575 -0.7611 0.0024 43 1 5.1694 0.1494 0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909898841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -163.392888 kcal Electronic energy + Delta-G solvation = -26202.138738 eV Core-core repulsion = 22145.459252 eV Total energy + Delta-G solvation = -4056.679486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96621 -40.98521 -39.85574 -38.03153 -37.59613 -34.96539 -34.72260 -34.66497 -31.82336 -29.60409 -28.84689 -28.32130 -27.81118 -27.12841 -24.75769 -23.18791 -22.69198 -21.89912 -19.86401 -19.61876 -19.02889 -18.29762 -17.81055 -17.70074 -17.48324 -17.09562 -16.96289 -16.66119 -16.42688 -16.13168 -15.89410 -15.67364 -15.39004 -15.05406 -14.89738 -14.24574 -14.23809 -13.93712 -13.87189 -13.81249 -13.33999 -13.06926 -13.03647 -12.60721 -12.58434 -12.45915 -12.40647 -12.34602 -12.22853 -12.04094 -11.79205 -11.47402 -11.41709 -11.15803 -10.81522 -10.59934 -9.78061 -8.99650 -8.51258 -8.10685 -6.23439 -0.33239 0.40824 1.07056 1.33876 1.45993 1.53669 1.55378 1.87763 2.16940 2.25758 2.30774 2.66890 2.69131 2.86636 2.98171 3.57962 3.73034 3.85639 3.86972 3.99681 4.13267 4.18098 4.28762 4.30775 4.36819 4.38071 4.40333 4.46702 4.55610 4.66558 4.67841 4.75568 4.78992 4.84408 5.00612 5.01206 5.13291 5.39363 5.44650 5.70058 6.05587 6.10942 6.35631 6.65338 6.79692 6.92087 7.07933 8.61825 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.001891 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.222654 B =14800.357739 C =16062.225740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.318 6.318 3 C 0.136 3.864 4 C -0.264 4.264 5 C 0.167 3.833 6 O -0.316 6.316 7 C 0.012 3.988 8 C -0.178 4.178 9 C 0.508 3.492 10 O -0.527 6.527 11 O -0.352 6.352 12 C 0.080 3.920 13 C -0.085 4.085 14 C -0.075 4.075 15 S -0.203 6.203 16 C -0.527 4.527 17 H 0.050 0.950 18 C 0.037 3.963 19 N -0.922 5.922 20 Si 0.927 3.073 21 H -0.260 1.260 22 H -0.263 1.263 23 H -0.226 1.226 24 C -0.078 4.078 25 C 0.145 3.855 26 N -0.867 5.867 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.171 0.829 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.277 0.723 41 H 0.158 0.842 42 H 0.408 0.592 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.760 -28.560 0.065 39.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.231 6.231 3 C 0.086 3.914 4 C -0.284 4.284 5 C 0.118 3.882 6 O -0.228 6.228 7 C -0.082 4.082 8 C -0.180 4.180 9 C 0.355 3.645 10 O -0.418 6.418 11 O -0.269 6.269 12 C 0.004 3.996 13 C -0.124 4.124 14 C -0.223 4.223 15 S 0.025 5.975 16 C -0.675 4.675 17 H 0.068 0.932 18 C -0.168 4.168 19 N -0.560 5.560 20 Si 0.748 3.252 21 H -0.185 1.185 22 H -0.188 1.188 23 H -0.150 1.150 24 C -0.102 4.102 25 C 0.041 3.959 26 N -0.411 5.411 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.085 0.915 30 H 0.188 0.812 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.176 0.824 42 H 0.238 0.762 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -27.039 -28.953 0.070 39.616 hybrid contribution -0.320 1.654 -0.045 1.685 sum -27.359 -27.299 0.026 38.649 Atomic orbital electron populations 1.23447 0.75902 1.06086 1.02511 1.85970 1.23804 1.25359 1.87946 1.18576 0.90387 0.85011 0.97468 1.21155 1.01881 0.89688 1.15680 1.18655 0.89190 0.86076 0.94328 1.86339 1.20720 1.28482 1.87275 1.23435 0.76729 1.05396 1.02651 1.18144 0.90340 0.90559 1.18999 1.21181 0.80630 0.90022 0.72710 1.90857 1.66148 1.37766 1.47048 1.86487 1.21680 1.34390 1.84330 1.22988 0.92825 0.80989 1.02768 1.21135 0.91066 0.95017 1.05156 1.22978 0.95011 1.00145 1.04177 1.83756 1.05003 1.11161 1.97587 1.22367 0.95967 0.90563 1.58583 0.93169 1.25810 1.00479 0.97849 0.92644 1.70042 1.19507 1.17374 1.49070 0.85693 0.78768 0.80463 0.80301 1.18489 1.18755 1.14952 1.20590 1.00660 0.88085 1.00846 1.16941 0.87712 0.88416 1.02865 1.42195 1.08638 1.04332 1.85974 0.91460 0.85781 0.91471 0.81210 0.90939 0.90950 0.87206 0.91183 0.91190 0.89441 0.89430 0.91149 0.91124 0.91376 0.82403 0.76244 0.76140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.32 -3.61 9.72 -91.24 -0.89 -4.49 16 3 C 0.14 2.06 6.71 22.70 0.15 2.22 16 4 C -0.26 -4.02 8.00 22.40 0.18 -3.84 16 5 C 0.17 3.72 6.70 22.82 0.15 3.87 16 6 O -0.32 -7.57 8.55 -69.60 -0.60 -8.17 16 7 C 0.01 0.15 9.81 113.37 1.11 1.26 16 8 C -0.18 -4.45 5.89 -20.02 -0.12 -4.57 16 9 C 0.51 15.59 7.88 70.16 0.55 16.14 16 10 O -0.53 -19.22 14.93 26.73 0.40 -18.82 16 11 O -0.35 -10.17 9.46 -56.98 -0.54 -10.71 16 12 C 0.08 2.35 5.48 71.98 0.39 2.74 16 13 C -0.09 -2.59 5.60 30.60 0.17 -2.42 16 14 C -0.07 -2.89 5.67 71.98 0.41 -2.48 16 15 S -0.20 -9.78 19.41 -56.49 -1.10 -10.87 16 16 C -0.53 -31.45 10.04 67.95 0.68 -30.77 16 17 H 0.05 3.27 8.03 -2.91 -0.02 3.24 16 18 C 0.04 2.19 5.50 84.86 0.47 2.65 16 19 N -0.92 -57.30 13.97 21.65 0.30 -57.00 16 20 Si 0.93 44.12 27.74 68.60 1.90 46.02 16 21 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.23 -10.28 6.74 99.48 0.67 -9.61 16 24 C -0.08 -1.53 9.44 22.65 0.21 -1.32 16 25 C 0.14 2.37 6.76 38.11 0.26 2.63 16 26 N -0.87 -9.60 9.10 -51.06 -0.46 -10.07 16 27 H 0.07 0.15 7.65 -2.39 -0.02 0.14 16 28 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.07 0.15 7.65 -2.39 -0.02 0.14 16 30 H 0.17 1.45 4.48 -2.91 -0.01 1.44 16 31 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 32 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.07 2.76 8.14 -2.40 -0.02 2.74 16 40 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 41 H 0.16 2.76 7.60 -2.91 -0.02 2.74 16 42 H 0.41 3.61 8.18 -92.71 -0.76 2.85 16 43 H 0.41 3.31 8.84 -92.71 -0.82 2.49 16 Total: -1.00 -78.20 378.30 4.21 -73.99 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -0.55 Total: 12.84 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 5.74 Total: -12.72 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -0.16 Total: -67.07 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -1.62 Total: -42.19 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.90 Total: 46.02 kcal Atomic # 16 Polarization: -9.78 SS G_CDS: -1.10 Total: -10.87 kcal Total: -78.20 4.21 -73.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909898841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.404 kcal (2) G-P(sol) polarization free energy of solvation -78.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds