Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 117.00298 * 2 1 4 4 C 1.38635 * 120.15388 * 0.02562 * 3 2 1 5 5 C 1.38503 * 120.55175 * 180.02562 * 4 3 2 6 6 C 1.38027 * 120.39645 * 0.02703 * 5 4 3 7 7 C 1.39190 * 119.58133 * 359.97438 * 6 5 4 8 8 C 1.38784 * 120.16198 * 180.02562 * 3 2 1 9 9 O 1.35618 * 121.64407 * 0.03530 * 8 3 2 10 10 C 1.42773 * 117.24705 * 146.96751 * 9 8 3 11 11 H 1.08999 * 109.14753 * 288.49489 * 10 9 8 12 12 C 1.50697 * 109.19155 * 169.19967 * 10 9 8 13 13 C 1.38323 * 119.96745 * 268.83937 * 12 10 9 14 14 C 1.38273 * 120.13969 * 180.30257 * 13 12 10 15 15 C 1.38125 * 120.06746 * 359.69434 * 14 13 12 16 16 C 1.38850 * 119.93279 * 0.02873 * 15 14 13 17 17 O 1.35750 * 120.07347 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99946 * 354.49431 * 17 16 15 19 19 H 1.08006 * 119.99863 * 5.04980 * 18 17 16 20 20 C 1.38651 * 120.00433 * 185.05685 * 18 17 16 21 21 N 1.31555 * 119.99652 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00416 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46982 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47372 * 119.99584 * 22 20 18 25 25 H 1.48504 * 109.46824 * 239.99852 * 22 20 18 26 26 C 1.38075 * 119.96181 * 88.58391 * 12 10 9 27 27 N 1.46328 * 110.90335 * 48.83067 * 10 9 8 28 28 C 1.35343 * 120.11909 * 326.55375 * 27 10 9 29 29 O 1.21595 * 121.13941 * 183.17576 * 28 27 10 30 30 H 1.08997 * 109.47429 * 59.99306 * 1 2 3 31 31 H 1.09002 * 109.47369 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46659 * 299.99961 * 1 2 3 33 33 H 1.08001 * 119.72360 * 0.02562 * 4 3 2 34 34 H 1.07994 * 119.79715 * 180.02562 * 5 4 3 35 35 H 1.08000 * 120.20516 * 180.02562 * 6 5 4 36 36 H 1.07997 * 119.92830 * 359.97438 * 13 12 10 37 37 H 1.08004 * 119.97153 * 179.72424 * 14 13 12 38 38 H 1.08007 * 120.03204 * 179.97438 * 15 14 13 39 39 H 0.97004 * 120.00035 * 179.97438 * 21 20 18 40 40 H 1.07999 * 120.03858 * 0.02562 * 26 12 10 41 41 H 0.97003 * 119.93570 * 146.53333 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2946 2.3765 0.0005 5 6 1.9149 3.6149 0.0000 6 6 3.2921 3.7061 -0.0016 7 6 4.0578 2.5437 -0.0022 8 6 3.4322 1.2882 -0.0005 9 8 4.2063 0.1746 -0.0018 10 6 5.4528 0.2458 -0.6942 11 1 5.2647 0.2706 -1.7675 12 6 6.2738 -0.9738 -0.3631 13 6 7.1520 -0.9464 0.7052 14 6 7.9115 -2.0613 1.0083 15 6 7.7907 -3.2085 0.2485 16 6 6.9059 -3.2411 -0.8211 17 8 6.7852 -4.3668 -1.5701 18 6 7.6332 -5.3784 -1.2956 19 1 8.3105 -5.3030 -0.4577 20 6 7.6360 -6.5155 -2.0890 21 7 6.8107 -6.6074 -3.1094 22 14 8.8104 -7.9173 -1.7083 23 1 9.6271 -7.5694 -0.5179 24 1 8.0338 -9.1527 -1.4325 25 1 9.7043 -8.1441 -2.8723 26 6 6.1446 -2.1191 -1.1233 27 7 6.1965 1.4455 -0.3084 28 6 5.5346 2.5853 -0.0009 29 8 6.1349 3.6084 0.2665 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2162 2.3177 0.0014 34 1 1.3173 4.5144 0.0009 35 1 3.7726 4.6734 -0.0016 36 1 7.2485 -0.0505 1.3005 37 1 8.5997 -2.0355 1.8403 38 1 8.3846 -4.0789 0.4855 39 1 6.8128 -7.4028 -3.6647 40 1 5.4560 -2.1412 -1.9551 41 1 7.1657 1.4238 -0.2728 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917501288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = -64.410844 kcal Electronic energy + Delta-G solvation = -28573.768146 eV Core-core repulsion = 24385.936892 eV Total energy + Delta-G solvation = -4187.831254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48321 -39.72662 -39.09792 -38.24110 -37.26873 -36.47591 -34.23553 -32.38046 -31.56475 -30.59435 -30.07822 -29.01567 -27.51427 -25.96664 -25.07187 -24.37080 -22.48869 -21.90795 -21.18053 -20.06331 -19.19485 -18.25192 -17.61293 -17.36437 -16.98214 -16.70087 -16.11829 -15.92706 -15.35731 -15.16068 -15.11242 -14.86646 -14.54977 -14.28263 -14.19591 -13.78066 -13.65069 -13.57681 -12.94191 -12.84622 -12.75197 -12.55637 -12.08317 -11.77399 -11.55049 -11.47894 -11.40639 -11.31849 -11.00053 -10.99435 -10.82948 -10.50366 -10.25704 -9.55741 -9.44173 -9.04336 -8.94034 -8.43522 -8.16434 -7.41026 -6.53374 -4.12715 0.45391 1.07306 1.69726 2.18052 2.52274 2.88320 3.02318 3.06333 3.09583 3.14980 3.18389 3.49646 3.88973 4.16031 4.41123 4.50555 4.54959 4.73463 4.75735 4.90646 4.92431 4.97923 5.01003 5.06907 5.17791 5.28250 5.29476 5.55194 5.75165 5.76916 5.84955 5.96597 6.03619 6.15104 6.24076 6.39072 6.51958 6.66194 6.71113 6.91038 6.95999 7.04635 7.19390 7.28204 7.33400 7.59100 7.90243 7.93795 8.91822 9.58821 10.64172 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.002734 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.354482 B =10239.603470 C =11582.629404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.299 6.299 3 C 0.100 3.900 4 C -0.154 4.154 5 C -0.118 4.118 6 C -0.064 4.064 7 C -0.176 4.176 8 C 0.128 3.872 9 O -0.290 6.290 10 C 0.368 3.632 11 H 0.091 0.909 12 C -0.075 4.075 13 C -0.186 4.186 14 C -0.074 4.074 15 C -0.216 4.216 16 C 0.151 3.849 17 O -0.173 6.173 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.153 4.153 27 N -0.737 5.737 28 C 0.574 3.426 29 O -0.525 6.525 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.271 0.729 40 H 0.124 0.876 41 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.234 15.872 5.106 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.213 6.213 3 C 0.054 3.946 4 C -0.173 4.173 5 C -0.137 4.137 6 C -0.083 4.083 7 C -0.180 4.180 8 C 0.082 3.918 9 O -0.201 6.201 10 C 0.228 3.772 11 H 0.109 0.891 12 C -0.076 4.076 13 C -0.205 4.205 14 C -0.092 4.092 15 C -0.236 4.236 16 C 0.097 3.903 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.173 4.173 27 N -0.399 5.399 28 C 0.362 3.638 29 O -0.402 6.402 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.081 0.919 40 H 0.142 0.858 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -10.306 15.739 4.938 19.450 hybrid contribution 0.774 -0.625 0.249 1.026 sum -9.532 15.114 5.187 18.606 Atomic orbital electron populations 1.23123 0.78298 1.04471 1.01083 1.86273 1.21190 1.25134 1.88656 1.18291 0.89096 0.85734 1.01431 1.21315 1.00331 0.91435 1.04200 1.20889 0.94132 0.97210 1.01427 1.20915 0.93188 0.97498 0.96681 1.19982 0.93656 0.93197 1.11202 1.18334 0.88108 0.85721 0.99676 1.86317 1.29310 1.32539 1.71949 1.21030 0.78382 0.83702 0.94123 0.89128 1.18827 0.97892 0.92836 0.98044 1.20381 1.01582 0.99221 0.99362 1.20730 0.97818 0.92558 0.98143 1.21303 1.03926 0.99700 0.98667 1.19197 0.92945 0.87524 0.90653 1.83982 1.52406 1.19390 1.51839 1.21387 1.16875 0.94045 1.14625 0.88894 1.25307 0.97806 0.98240 0.95073 1.70045 1.34894 1.28707 1.15650 0.85632 0.79185 0.79821 0.78708 1.19046 1.20066 1.20070 1.19905 1.03568 0.90966 1.02847 1.46888 1.11710 1.10519 1.70780 1.18065 0.87027 0.82801 0.75869 1.90815 1.70104 1.30714 1.48541 0.92584 0.87818 0.92674 0.84254 0.84678 0.84153 0.87274 0.86900 0.85139 0.91927 0.85849 0.74274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.85 10.35 -32.54 -0.34 -4.18 16 3 C 0.10 1.26 6.69 -39.23 -0.26 1.00 16 4 C -0.15 -1.41 9.04 -39.34 -0.36 -1.77 16 5 C -0.12 -1.02 10.03 -39.56 -0.40 -1.42 16 6 C -0.06 -0.70 9.68 -39.31 -0.38 -1.08 16 7 C -0.18 -2.40 5.81 -104.89 -0.61 -3.01 16 8 C 0.13 1.86 6.50 -38.61 -0.25 1.60 16 9 O -0.29 -4.75 9.90 -31.35 -0.31 -5.06 16 10 C 0.37 5.55 3.89 -5.29 -0.02 5.53 16 11 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 12 C -0.07 -1.30 5.33 -104.65 -0.56 -1.85 16 13 C -0.19 -3.11 8.97 -39.54 -0.35 -3.47 16 14 C -0.07 -1.29 10.04 -39.61 -0.40 -1.69 16 15 C -0.22 -4.46 9.17 -39.40 -0.36 -4.82 16 16 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 17 O -0.17 -4.74 9.76 0.05 0.00 -4.74 16 18 C -0.39 -10.59 9.49 30.88 0.29 -10.30 16 19 H 0.09 2.31 5.20 -52.48 -0.27 2.03 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.47 13.67 55.48 0.76 -23.71 16 22 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 C -0.15 -3.08 9.64 -39.39 -0.38 -3.46 16 27 N -0.74 -10.30 4.74 -60.55 -0.29 -10.58 16 28 C 0.57 8.58 7.95 -12.12 -0.10 8.48 16 29 O -0.52 -8.88 17.55 5.28 0.09 -8.78 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 33 H 0.14 0.85 6.28 -52.49 -0.33 0.52 16 34 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.14 1.39 7.88 -52.49 -0.41 0.97 16 36 H 0.11 1.63 7.18 -52.49 -0.38 1.25 16 37 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.13 2.68 5.64 -52.48 -0.30 2.38 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.42 5.36 7.88 -40.82 -0.32 5.04 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -32.63 355.11 -7.30 -39.93 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.05 Total: 7.76 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -3.49 Total: -10.86 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.47 Total: -34.29 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.55 Total: -22.77 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.63 -7.30 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917501288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.481 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds