Wall clock time and date at job start Sat Apr 11 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00010 * 2 1 4 4 O 1.42905 * 112.84467 * 294.93848 * 3 2 1 5 5 C 1.42901 * 113.99785 * 309.55880 * 4 3 2 6 6 C 1.53774 * 113.61724 * 66.13059 * 3 2 1 7 7 C 1.53778 * 87.08017 * 89.11935 * 6 3 2 8 8 N 1.46495 * 113.61732 * 139.98406 * 7 6 3 9 9 S 1.65600 * 120.00301 * 144.53247 * 8 7 6 10 10 O 1.42098 * 106.40221 * 309.60271 * 9 8 7 11 11 O 1.42100 * 106.40259 * 176.68533 * 9 8 7 12 12 C 1.76194 * 107.21863 * 63.14621 * 9 8 7 13 13 C 1.37644 * 120.12658 * 245.02548 * 12 9 8 14 14 C 1.38616 * 120.24991 * 180.29773 * 13 12 9 15 15 C 1.38660 * 120.49880 * 359.44454 * 14 13 12 16 16 C 1.37599 * 120.24452 * 0.55555 * 15 14 13 17 17 C 1.40694 * 120.13222 * 65.04828 * 12 9 8 18 18 C 1.41392 * 120.24129 * 359.95719 * 17 12 9 19 19 H 1.08004 * 120.00413 * 328.46257 * 18 17 12 20 20 C 1.39944 * 120.00057 * 148.46304 * 18 17 12 21 21 N 1.30829 * 120.00428 * 164.43347 * 20 18 17 22 22 Si 1.86804 * 120.00151 * 344.43333 * 20 18 17 23 23 H 1.48496 * 109.46904 * 88.16712 * 22 20 18 24 24 H 1.48492 * 109.47311 * 208.16967 * 22 20 18 25 25 H 1.48498 * 109.46680 * 328.17180 * 22 20 18 26 26 C 1.53783 * 87.17523 * 25.38851 * 7 6 3 27 27 H 1.09002 * 109.47119 * 302.88092 * 1 2 3 28 28 H 1.09007 * 109.47247 * 62.88049 * 1 2 3 29 29 H 1.09003 * 109.47353 * 182.87891 * 1 2 3 30 30 H 1.09001 * 109.47303 * 305.51153 * 5 4 3 31 31 H 1.09000 * 109.47456 * 65.51700 * 5 4 3 32 32 H 1.09002 * 109.46813 * 185.51725 * 5 4 3 33 33 H 1.09004 * 113.61387 * 334.57083 * 6 3 2 34 34 H 1.08997 * 113.61622 * 203.66717 * 6 3 2 35 35 H 1.09008 * 113.61641 * 270.79930 * 7 6 3 36 36 H 0.97003 * 119.99703 * 324.52671 * 8 7 6 37 37 H 1.08001 * 119.87244 * 0.02562 * 13 12 9 38 38 H 1.07995 * 119.75034 * 179.70481 * 14 13 12 39 39 H 1.07998 * 119.87418 * 180.30470 * 15 14 13 40 40 H 1.07999 * 120.12217 * 179.74353 * 16 15 14 41 41 H 0.96989 * 120.00428 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.60832 * 89.15825 * 26 7 6 43 43 H 1.08995 * 113.61596 * 220.06002 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.7286 2.0382 -1.1942 5 6 2.0118 1.3203 -2.3969 6 6 1.7400 2.1002 1.2884 7 6 3.0243 1.4703 1.8528 8 7 3.8378 2.4009 2.6391 9 16 4.6673 1.8584 3.9657 10 8 3.7320 1.1386 4.7571 11 8 5.4097 2.9665 4.4556 12 6 5.8482 0.6809 3.3969 13 6 5.7460 -0.6384 3.7759 14 6 6.6771 -1.5658 3.3348 15 6 7.7139 -1.1793 2.4992 16 6 7.8356 0.1342 2.1077 17 6 6.8994 1.0855 2.5540 18 6 7.0142 2.4379 2.1578 19 1 6.1275 3.0426 2.0376 20 6 8.2769 2.9930 1.9214 21 7 8.3833 4.1241 1.2725 22 14 9.8107 2.1191 2.5323 23 1 10.2736 1.1540 1.5030 24 1 10.8793 3.1172 2.7911 25 1 9.4984 1.3912 3.7884 26 6 3.4974 1.3163 0.3977 27 1 -0.3633 0.5579 0.8630 28 1 -0.3634 0.4685 -0.9147 29 1 -0.3634 -1.0264 0.0516 30 1 3.0448 0.9728 -2.3780 31 1 1.3418 0.4642 -2.4755 32 1 1.8650 1.9766 -3.2548 33 1 0.8352 1.7898 1.8112 34 1 1.8046 3.1802 1.1570 35 1 2.8580 0.5203 2.3608 36 1 3.8907 3.3349 2.3826 37 1 4.9398 -0.9514 4.4228 38 1 6.5919 -2.5979 3.6410 39 1 8.4309 -1.9112 2.1577 40 1 8.6463 0.4339 1.4601 41 1 9.2584 4.5090 1.1090 42 1 4.0435 2.1817 0.0223 43 1 4.0095 0.3741 0.2025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920074124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:47 Heat of formation + Delta-G solvation = -119.358409 kcal Electronic energy + Delta-G solvation = -29175.971027 eV Core-core repulsion = 25121.201019 eV Total energy + Delta-G solvation = -4054.770008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.27922 -37.88050 -36.60368 -36.21627 -36.04154 -34.90092 -33.86314 -31.94390 -30.71438 -30.11756 -27.21007 -26.97531 -25.43064 -25.34207 -23.03589 -22.05465 -21.19935 -19.92726 -18.82600 -17.83846 -17.75755 -17.04264 -16.43881 -16.24270 -15.73007 -15.36490 -15.27295 -14.76356 -14.55056 -14.38263 -14.20024 -13.82952 -13.76218 -13.50680 -12.94397 -12.81265 -12.52589 -12.24917 -12.11963 -12.01007 -11.87575 -11.71901 -11.32886 -11.31894 -11.21475 -11.13349 -10.97900 -10.86680 -10.77533 -10.60714 -10.40623 -10.02939 -9.98749 -9.68852 -9.63630 -9.30352 -8.84975 -8.27364 -7.84862 -7.21720 -4.86710 1.43835 2.05933 2.50975 2.96787 3.08120 3.19166 3.41717 3.53852 3.79507 3.92602 4.27393 4.49812 4.59054 4.67740 4.90332 5.07580 5.16060 5.24455 5.28074 5.36865 5.40979 5.49138 5.52975 5.65061 5.71720 5.79924 5.82460 5.88658 5.92291 5.97474 6.16877 6.20672 6.40182 6.45599 6.57597 6.66267 6.92442 7.07879 7.22912 7.37305 7.42712 7.51029 7.55642 7.78548 8.03688 8.26016 8.48890 9.77941 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004643 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.595606 B = 6029.608849 C = 6457.308000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.235 3.765 4 O -0.384 6.384 5 C 0.034 3.966 6 C -0.148 4.148 7 C 0.149 3.851 8 N -1.105 6.105 9 S 2.699 3.301 10 O -0.996 6.996 11 O -0.959 6.959 12 C -0.768 4.768 13 C 0.017 3.983 14 C -0.259 4.259 15 C -0.042 4.042 16 C -0.239 4.239 17 C 0.162 3.838 18 C -0.430 4.430 19 H 0.103 0.897 20 C 0.091 3.909 21 N -0.781 5.781 22 Si 0.914 3.086 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.243 1.243 26 C -0.148 4.148 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.415 0.585 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.292 0.708 42 H 0.114 0.886 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.766 -4.607 -5.344 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.157 3.843 4 O -0.304 6.304 5 C -0.063 4.063 6 C -0.187 4.187 7 C 0.040 3.960 8 N -0.860 5.860 9 S 2.796 3.204 10 O -0.986 6.986 11 O -0.949 6.949 12 C -0.862 4.862 13 C -0.003 4.003 14 C -0.279 4.279 15 C -0.061 4.061 16 C -0.259 4.259 17 C 0.157 3.843 18 C -0.457 4.457 19 H 0.121 0.879 20 C -0.132 4.132 21 N -0.402 5.402 22 Si 0.740 3.260 23 H -0.191 1.191 24 H -0.212 1.212 25 H -0.166 1.166 26 C -0.188 4.188 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.250 0.750 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.803 -4.195 -4.509 11.577 hybrid contribution 1.062 -0.419 -0.762 1.373 sum -8.741 -4.615 -5.271 11.202 Atomic orbital electron populations 1.22745 0.80777 1.02647 1.00685 1.88054 1.20332 1.26824 1.94032 1.23852 0.94768 0.80761 0.84878 1.88037 1.87244 1.41030 1.14125 1.22609 1.00280 0.96911 0.86458 1.23927 0.99328 1.01961 0.93527 1.21700 0.90022 0.93289 0.90944 1.55610 1.62993 1.18552 1.48794 1.01181 0.73002 0.73836 0.72371 1.93463 1.63260 1.74934 1.66955 1.93569 1.71587 1.52001 1.77774 1.29941 1.22158 1.10945 1.23176 1.20414 0.95469 0.91473 0.92943 1.20499 1.00589 0.98281 1.08544 1.20842 0.95623 0.95377 0.94274 1.21318 1.03660 0.93646 1.07238 1.17042 0.88765 0.92866 0.85611 1.19773 0.95767 0.94377 1.35825 0.87913 1.26147 1.01416 0.94635 0.91040 1.69624 1.28233 1.16527 1.25820 0.86322 0.78970 0.78851 0.81864 1.19100 1.21230 1.16615 1.24063 0.93451 1.05053 0.96243 0.93371 0.93706 0.89483 0.93410 0.93887 0.89938 0.89708 0.87569 0.86177 0.75030 0.86861 0.88143 0.88312 0.87233 0.89724 0.86780 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.61 101.05 1.07 1.35 16 2 O -0.37 -4.99 9.82 -58.61 -0.58 -5.56 16 3 C 0.24 3.23 1.02 -25.83 -0.03 3.20 16 4 O -0.38 -5.24 10.37 -58.61 -0.61 -5.84 16 5 C 0.03 0.38 10.66 101.05 1.08 1.46 16 6 C -0.15 -1.93 7.25 -25.92 -0.19 -2.11 16 7 C 0.15 2.30 4.33 -67.12 -0.29 2.01 16 8 N -1.10 -19.08 4.87 -4.20 -0.02 -19.10 16 9 S 2.70 57.17 4.92 -107.50 -0.53 56.64 16 10 O -1.00 -21.73 16.58 -57.17 -0.95 -22.68 16 11 O -0.96 -23.45 16.62 -57.17 -0.95 -24.40 16 12 C -0.77 -17.30 5.90 -38.87 -0.23 -17.53 16 13 C 0.02 0.35 9.54 -39.66 -0.38 -0.02 16 14 C -0.26 -5.17 10.05 -39.29 -0.39 -5.56 16 15 C -0.04 -0.87 10.02 -39.66 -0.40 -1.26 16 16 C -0.24 -5.41 7.26 -38.87 -0.28 -5.69 16 17 C 0.16 3.88 5.08 -106.83 -0.54 3.34 16 18 C -0.43 -10.75 8.07 -37.74 -0.30 -11.05 16 19 H 0.10 2.54 6.13 -52.48 -0.32 2.22 16 20 C 0.09 2.25 5.43 -17.34 -0.09 2.15 16 21 N -0.78 -19.30 13.93 55.55 0.77 -18.52 16 22 Si 0.91 20.01 24.57 -169.99 -4.18 15.83 16 23 H -0.26 -5.45 6.40 56.52 0.36 -5.09 16 24 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.24 -5.59 7.06 56.52 0.40 -5.19 16 26 C -0.15 -2.26 7.33 -25.83 -0.19 -2.45 16 27 H 0.05 0.45 6.65 -51.93 -0.35 0.10 16 28 H 0.04 0.43 7.65 -51.93 -0.40 0.03 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.55 7.97 -51.93 -0.41 0.14 16 31 H 0.04 0.45 7.32 -51.93 -0.38 0.07 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.98 6.74 -51.93 -0.35 0.63 16 34 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.12 1.88 7.83 -51.92 -0.41 1.48 16 36 H 0.42 6.57 8.76 -34.47 -0.30 6.27 16 37 H 0.11 2.18 7.32 -52.49 -0.38 1.79 16 38 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.11 2.42 4.57 -52.49 -0.24 2.18 16 41 H 0.29 6.51 8.30 -40.82 -0.34 6.18 16 42 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -30.29 360.89 -8.44 -38.73 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.68 Total: 11.63 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: -1.17 Total: -32.18 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.75 Total: -37.62 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -3.08 Total: -58.48 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.18 Total: 15.83 kcal Atomic # 16 Polarization: 57.17 SS G_CDS: -0.53 Total: 56.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.29 -8.44 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920074124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.626 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds