Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00010 * 2 1 4 4 O 1.42905 * 112.84467 * 294.93848 * 3 2 1 5 5 C 1.42901 * 113.99785 * 309.55880 * 4 3 2 6 6 C 1.53774 * 113.61724 * 66.13059 * 3 2 1 7 7 C 1.53778 * 87.08017 * 89.11935 * 6 3 2 8 8 N 1.46495 * 113.61732 * 139.98406 * 7 6 3 9 9 S 1.65600 * 120.00301 * 144.53247 * 8 7 6 10 10 O 1.42098 * 106.40221 * 309.60271 * 9 8 7 11 11 O 1.42100 * 106.40259 * 176.68533 * 9 8 7 12 12 C 1.76194 * 107.21863 * 63.14621 * 9 8 7 13 13 C 1.37644 * 120.12658 * 245.02548 * 12 9 8 14 14 C 1.38616 * 120.24991 * 180.29773 * 13 12 9 15 15 C 1.38660 * 120.49880 * 359.44454 * 14 13 12 16 16 C 1.37599 * 120.24452 * 0.55555 * 15 14 13 17 17 C 1.40694 * 120.13222 * 65.04828 * 12 9 8 18 18 C 1.41392 * 120.24129 * 359.95719 * 17 12 9 19 19 H 1.08004 * 120.00413 * 328.46257 * 18 17 12 20 20 C 1.39944 * 120.00057 * 148.46304 * 18 17 12 21 21 N 1.30829 * 120.00428 * 164.43347 * 20 18 17 22 22 Si 1.86804 * 120.00151 * 344.43333 * 20 18 17 23 23 H 1.48496 * 109.46904 * 88.16712 * 22 20 18 24 24 H 1.48492 * 109.47311 * 208.16967 * 22 20 18 25 25 H 1.48498 * 109.46680 * 328.17180 * 22 20 18 26 26 C 1.53783 * 87.17523 * 25.38851 * 7 6 3 27 27 H 1.09002 * 109.47119 * 302.88092 * 1 2 3 28 28 H 1.09007 * 109.47247 * 62.88049 * 1 2 3 29 29 H 1.09003 * 109.47353 * 182.87891 * 1 2 3 30 30 H 1.09001 * 109.47303 * 305.51153 * 5 4 3 31 31 H 1.09000 * 109.47456 * 65.51700 * 5 4 3 32 32 H 1.09002 * 109.46813 * 185.51725 * 5 4 3 33 33 H 1.09004 * 113.61387 * 334.57083 * 6 3 2 34 34 H 1.08997 * 113.61622 * 203.66717 * 6 3 2 35 35 H 1.09008 * 113.61641 * 270.79930 * 7 6 3 36 36 H 0.97003 * 119.99703 * 324.52671 * 8 7 6 37 37 H 1.08001 * 119.87244 * 0.02562 * 13 12 9 38 38 H 1.07995 * 119.75034 * 179.70481 * 14 13 12 39 39 H 1.07998 * 119.87418 * 180.30470 * 15 14 13 40 40 H 1.07999 * 120.12217 * 179.74353 * 16 15 14 41 41 H 0.96989 * 120.00428 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.60832 * 89.15825 * 26 7 6 43 43 H 1.08995 * 113.61596 * 220.06002 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.7286 2.0382 -1.1942 5 6 2.0118 1.3203 -2.3969 6 6 1.7400 2.1002 1.2884 7 6 3.0243 1.4703 1.8528 8 7 3.8378 2.4009 2.6391 9 16 4.6673 1.8584 3.9657 10 8 3.7320 1.1386 4.7571 11 8 5.4097 2.9665 4.4556 12 6 5.8482 0.6809 3.3969 13 6 5.7460 -0.6384 3.7759 14 6 6.6771 -1.5658 3.3348 15 6 7.7139 -1.1793 2.4992 16 6 7.8356 0.1342 2.1077 17 6 6.8994 1.0855 2.5540 18 6 7.0142 2.4379 2.1578 19 1 6.1275 3.0426 2.0376 20 6 8.2769 2.9930 1.9214 21 7 8.3833 4.1241 1.2725 22 14 9.8107 2.1191 2.5323 23 1 10.2736 1.1540 1.5030 24 1 10.8793 3.1172 2.7911 25 1 9.4984 1.3912 3.7884 26 6 3.4974 1.3163 0.3977 27 1 -0.3633 0.5579 0.8630 28 1 -0.3634 0.4685 -0.9147 29 1 -0.3634 -1.0264 0.0516 30 1 3.0448 0.9728 -2.3780 31 1 1.3418 0.4642 -2.4755 32 1 1.8650 1.9766 -3.2548 33 1 0.8352 1.7898 1.8112 34 1 1.8046 3.1802 1.1570 35 1 2.8580 0.5203 2.3608 36 1 3.8907 3.3349 2.3826 37 1 4.9398 -0.9514 4.4228 38 1 6.5919 -2.5979 3.6410 39 1 8.4309 -1.9112 2.1577 40 1 8.6463 0.4339 1.4601 41 1 9.2584 4.5090 1.1090 42 1 4.0435 2.1817 0.0223 43 1 4.0095 0.3741 0.2025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920074124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = -141.393318 kcal Electronic energy + Delta-G solvation = -29176.926532 eV Core-core repulsion = 25121.201019 eV Total energy + Delta-G solvation = -4055.725513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36608 -39.57949 -38.09901 -37.64324 -37.02984 -36.69769 -35.63162 -33.29848 -32.43857 -31.79976 -28.11625 -27.92135 -27.18485 -26.40384 -24.23037 -23.72495 -22.92578 -21.09260 -20.37863 -19.54205 -19.02215 -18.56998 -18.05420 -17.42052 -17.12310 -16.71736 -16.64466 -15.93455 -15.85765 -15.77246 -15.52814 -15.47571 -15.19766 -14.71831 -14.57704 -14.18435 -13.98579 -13.72076 -13.58030 -13.21509 -13.05620 -13.00788 -12.94930 -12.90494 -12.80319 -12.67324 -12.55612 -12.47332 -12.20390 -12.13011 -11.72325 -11.59898 -11.33225 -11.03122 -10.95210 -10.74767 -10.27995 -9.95642 -9.57699 -9.01418 -6.69217 -0.22318 0.34846 0.78444 1.21947 1.35948 1.43941 2.04347 2.19934 2.44106 2.52697 2.69228 2.93200 3.31761 3.40394 3.47808 3.70932 3.85216 4.00913 4.23444 4.33309 4.39433 4.43554 4.48935 4.52396 4.56328 4.63282 4.67565 4.70360 4.73608 4.80335 4.86510 4.89691 4.93737 4.98454 5.20019 5.30379 5.39571 5.53110 5.57115 5.67272 5.84336 6.02947 6.12860 6.26072 6.44033 6.50775 6.70013 8.03577 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004643 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.595606 B = 6029.608849 C = 6457.308000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.387 6.387 3 C 0.244 3.756 4 O -0.394 6.394 5 C 0.028 3.972 6 C -0.138 4.138 7 C 0.140 3.860 8 N -1.095 6.095 9 S 2.715 3.285 10 O -1.003 7.003 11 O -0.997 6.997 12 C -0.779 4.779 13 C 0.002 3.998 14 C -0.247 4.247 15 C -0.040 4.040 16 C -0.262 4.262 17 C 0.151 3.849 18 C -0.464 4.464 19 H 0.090 0.910 20 C 0.058 3.942 21 N -0.816 5.816 22 Si 0.951 3.049 23 H -0.243 1.243 24 H -0.275 1.275 25 H -0.263 1.263 26 C -0.152 4.152 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.421 0.579 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.299 0.701 42 H 0.102 0.898 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 -6.793 -5.622 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.308 6.308 3 C 0.166 3.834 4 O -0.315 6.315 5 C -0.067 4.067 6 C -0.177 4.177 7 C 0.031 3.969 8 N -0.853 5.853 9 S 2.811 3.189 10 O -0.993 6.993 11 O -0.988 6.988 12 C -0.873 4.873 13 C -0.018 4.018 14 C -0.267 4.267 15 C -0.058 4.058 16 C -0.282 4.282 17 C 0.146 3.854 18 C -0.492 4.492 19 H 0.108 0.892 20 C -0.162 4.162 21 N -0.439 5.439 22 Si 0.774 3.226 23 H -0.168 1.168 24 H -0.201 1.201 25 H -0.187 1.187 26 C -0.192 4.192 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.257 0.743 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.598 -6.390 -4.805 13.275 hybrid contribution 1.160 0.067 -0.662 1.337 sum -9.438 -6.323 -5.466 12.607 Atomic orbital electron populations 1.22989 0.78944 1.04225 1.01383 1.88027 1.22288 1.26362 1.94133 1.23589 0.93388 0.81155 0.85296 1.88020 1.87185 1.41598 1.14669 1.22778 0.99994 0.97701 0.86247 1.23887 0.98597 1.02302 0.92956 1.21906 0.91177 0.93199 0.90568 1.55267 1.62619 1.19166 1.48221 1.00545 0.72621 0.73018 0.72695 1.93443 1.63125 1.74989 1.67720 1.93516 1.72708 1.53383 1.79151 1.30165 1.22303 1.12066 1.22777 1.20769 0.96538 0.91120 0.93351 1.21009 0.99147 0.99850 1.06724 1.21299 0.96129 0.95124 0.93260 1.21494 1.03919 0.94641 1.08098 1.17223 0.89627 0.92821 0.85744 1.19844 0.95840 0.95238 1.38260 0.89193 1.26706 1.03181 0.95181 0.91099 1.69636 1.29126 1.17651 1.27511 0.85773 0.77168 0.78662 0.80986 1.16758 1.20109 1.18683 1.24006 0.94891 1.03921 0.96399 0.92507 0.93163 0.87551 0.94276 0.92969 0.87917 0.87709 0.86793 0.86270 0.74273 0.85145 0.84422 0.84534 0.87101 0.88982 0.87944 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.61 113.37 1.20 1.56 16 2 O -0.39 -9.75 9.82 -126.63 -1.24 -10.99 16 3 C 0.24 6.44 1.02 31.18 0.03 6.47 16 4 O -0.39 -10.28 10.37 -126.63 -1.31 -11.59 16 5 C 0.03 0.61 10.66 113.37 1.21 1.82 16 6 C -0.14 -3.41 7.25 31.12 0.23 -3.18 16 7 C 0.14 4.26 4.33 45.52 0.20 4.46 16 8 N -1.09 -38.38 4.87 -167.20 -0.81 -39.19 16 9 S 2.71 116.22 4.92 -56.49 -0.28 115.94 16 10 O -1.00 -43.23 16.58 -128.00 -2.12 -45.35 16 11 O -1.00 -50.27 16.62 -128.00 -2.13 -52.40 16 12 C -0.78 -34.96 5.90 22.73 0.13 -34.83 16 13 C 0.00 0.07 9.54 22.22 0.21 0.29 16 14 C -0.25 -9.01 10.05 22.46 0.23 -8.79 16 15 C -0.04 -1.50 10.02 22.22 0.22 -1.28 16 16 C -0.26 -11.56 7.26 22.73 0.17 -11.40 16 17 C 0.15 7.25 5.08 -21.29 -0.11 7.14 16 18 C -0.46 -23.94 8.07 23.46 0.19 -23.75 16 19 H 0.09 4.69 6.13 -2.91 -0.02 4.67 16 20 C 0.06 2.92 5.43 85.26 0.46 3.39 16 21 N -0.82 -41.64 13.93 21.83 0.30 -41.33 16 22 Si 0.95 40.99 24.57 68.60 1.69 42.68 16 23 H -0.24 -9.47 6.40 99.48 0.64 -8.83 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.26 -12.02 7.06 99.48 0.70 -11.32 16 26 C -0.15 -4.69 7.33 31.18 0.23 -4.46 16 27 H 0.06 0.91 6.65 -2.39 -0.02 0.89 16 28 H 0.05 0.84 7.65 -2.38 -0.02 0.82 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 0.89 7.97 -2.39 -0.02 0.87 16 31 H 0.05 1.00 7.32 -2.39 -0.02 0.99 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 2.17 6.74 -2.38 -0.02 2.16 16 34 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.12 3.66 7.83 -2.38 -0.02 3.64 16 36 H 0.42 13.79 8.76 -96.74 -0.85 12.94 16 37 H 0.13 4.72 7.32 -2.91 -0.02 4.70 16 38 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.11 4.79 4.57 -2.91 -0.01 4.77 16 41 H 0.30 13.73 8.30 -92.72 -0.77 12.96 16 42 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -65.26 360.89 -1.18 -66.44 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.13 Total: 38.36 kcal Atomic # 6 Polarization: -67.17 SS G_CDS: 4.60 Total: -62.57 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -0.51 Total: -80.52 kcal Atomic # 8 Polarization: -113.52 SS G_CDS: -6.81 Total: -120.33 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.69 Total: 42.68 kcal Atomic # 16 Polarization: 116.22 SS G_CDS: -0.28 Total: 115.94 kcal Total: -65.26 -1.18 -66.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920074124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.949 kcal (2) G-P(sol) polarization free energy of solvation -65.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds