Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.47245 * 2 1 4 4 C 1.34232 * 116.99817 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00419 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99693 * 179.97438 * 4 3 2 7 7 N 1.46899 * 109.46633 * 179.97438 * 6 4 3 8 8 C 1.46897 * 111.00162 * 66.04744 * 7 6 4 9 9 C 1.50704 * 109.47102 * 62.03139 * 8 7 6 10 10 H 1.08003 * 119.99787 * 5.03849 * 9 8 7 11 11 C 1.37877 * 120.00037 * 185.04717 * 9 8 7 12 12 N 1.31510 * 120.00113 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99966 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46814 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47045 * 119.99658 * 13 11 9 16 16 H 1.48499 * 109.46783 * 239.99476 * 13 11 9 17 17 C 1.46901 * 110.99711 * 189.99816 * 7 6 4 18 18 C 1.50705 * 109.47081 * 163.68511 * 17 7 6 19 19 C 1.33864 * 124.51181 * 95.48745 * 18 17 7 20 20 C 1.37417 * 115.10288 * 179.85312 * 19 18 17 21 21 C 1.36749 * 113.28985 * 0.42368 * 20 19 18 22 22 C 1.46391 * 125.45866 * 179.77068 * 21 20 19 23 23 O 1.21628 * 120.00325 * 0.02771 * 22 21 20 24 24 O 1.34900 * 119.99660 * 180.02562 * 22 21 20 25 25 C 1.45205 * 116.99882 * 180.02562 * 24 22 21 26 26 S 1.70613 * 124.52290 * 275.78911 * 18 17 7 27 27 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46946 * 300.00061 * 1 2 3 29 29 H 1.08994 * 109.47058 * 59.99847 * 1 2 3 30 30 H 1.09002 * 109.46946 * 239.99939 * 2 1 3 31 31 H 1.09000 * 109.47467 * 120.00158 * 2 1 3 32 32 H 1.08994 * 109.46950 * 59.99919 * 6 4 3 33 33 H 1.08999 * 109.46828 * 299.99683 * 6 4 3 34 34 H 1.09004 * 109.47103 * 182.02791 * 8 7 6 35 35 H 1.08991 * 109.47304 * 302.03024 * 8 7 6 36 36 H 0.97004 * 119.99899 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.47650 * 283.69086 * 17 7 6 38 38 H 1.09006 * 109.46899 * 43.69048 * 17 7 6 39 39 H 1.07994 * 122.44605 * 0.02562 * 19 18 17 40 40 H 1.08007 * 123.35200 * 180.21878 * 20 19 18 41 41 H 1.08997 * 109.47251 * 60.00263 * 25 24 22 42 42 H 1.09001 * 109.47005 * 179.97438 * 25 24 22 43 43 H 1.09006 * 109.47273 * 300.00005 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 -0.0012 7 7 5.3878 2.8604 -0.0010 8 6 5.8844 2.2762 -1.2540 9 6 5.4881 3.1571 -2.4108 10 1 4.9954 4.1005 -2.2270 11 6 5.7543 2.7587 -3.7036 12 7 6.3545 1.6102 -3.9273 13 14 5.2624 3.8504 -5.1374 14 1 4.6064 5.0788 -4.6219 15 1 6.4722 4.2231 -5.9136 16 1 4.3169 3.1165 -6.0166 17 6 5.9842 4.1817 0.2365 18 6 7.4307 4.0171 0.6263 19 6 8.4597 4.0975 -0.2261 20 6 9.6998 3.9194 0.3387 21 6 9.6518 3.6807 1.6843 22 6 10.8112 3.4492 2.5476 23 8 11.9324 3.4605 2.0763 24 8 10.6360 3.2232 3.8660 25 6 11.8305 3.0022 4.6614 26 16 7.9745 3.6965 2.2113 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5852 3.4697 0.8887 33 1 3.5846 3.4692 -0.8912 34 1 6.9708 2.1976 -1.2128 35 1 5.4533 1.2842 -1.3884 36 1 6.5422 1.3301 -4.8369 37 1 5.9187 4.7788 -0.6730 38 1 5.4461 4.6839 1.0405 39 1 8.3254 4.2910 -1.2800 40 1 10.6203 3.9604 -0.2247 41 1 12.4767 3.8777 4.5976 42 1 11.5489 2.8339 5.7008 43 1 12.3628 2.1295 4.2828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140524550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = -127.676303 kcal Electronic energy + Delta-G solvation = -27194.695290 eV Core-core repulsion = 23139.564591 eV Total energy + Delta-G solvation = -4055.130699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.22227 -39.94300 -38.10497 -36.83433 -36.19345 -35.49448 -32.60304 -31.64524 -30.81054 -28.47128 -27.86447 -26.73606 -24.99928 -23.44593 -22.99968 -21.79412 -21.21695 -19.88893 -18.99432 -18.19104 -17.25777 -16.77033 -16.36947 -16.34524 -16.23268 -15.82908 -15.43729 -14.86260 -14.80356 -14.40289 -14.15949 -13.68085 -13.46498 -13.25081 -13.08632 -12.71529 -12.48164 -12.37519 -12.30708 -12.24174 -11.85969 -11.84328 -11.38949 -11.29125 -11.15547 -10.96503 -10.92239 -10.86163 -10.63530 -10.53882 -10.45454 -10.16220 -10.13028 -9.82366 -9.50192 -8.48550 -8.47746 -8.20840 -7.44553 -6.09716 -4.20410 0.63335 1.75007 2.24862 2.47368 2.69940 2.88822 3.04641 3.20536 3.22828 3.29838 3.30350 4.32584 4.82494 4.95132 4.99965 5.05685 5.07497 5.08746 5.20363 5.24792 5.30729 5.40713 5.42404 5.44739 5.64900 5.67656 5.83137 5.85239 5.87457 6.01935 6.08931 6.20754 6.25630 6.43364 6.60106 6.71037 6.89119 7.04334 7.49095 7.74685 7.75212 7.87079 8.06279 8.16300 8.45876 8.90055 9.46348 10.95532 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009690 B = 0.003490 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.981636 B = 8020.266479 C =10174.324591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.466 3.534 5 O -0.482 6.482 6 C 0.071 3.929 7 N -0.525 5.525 8 C 0.175 3.825 9 C -0.561 4.561 10 H 0.058 0.942 11 C 0.071 3.929 12 N -0.881 5.881 13 Si 0.885 3.115 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.118 3.882 18 C -0.145 4.145 19 C -0.150 4.150 20 C -0.028 4.028 21 C -0.293 4.293 22 C 0.546 3.454 23 O -0.509 6.509 24 O -0.358 6.358 25 C 0.039 3.961 26 S 0.244 5.756 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.036 0.964 35 H 0.058 0.942 36 H 0.263 0.737 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 3.767 14.002 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.287 6.287 4 C 0.307 3.693 5 O -0.367 6.367 6 C -0.058 4.058 7 N -0.250 5.250 8 C 0.050 3.950 9 C -0.600 4.600 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.518 5.518 13 Si 0.712 3.288 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.011 4.011 18 C -0.266 4.266 19 C -0.180 4.180 20 C -0.063 4.063 21 C -0.411 4.411 22 C 0.391 3.609 23 O -0.399 6.399 24 O -0.275 6.275 25 C -0.055 4.055 26 S 0.513 5.487 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.172 0.828 40 H 0.167 0.833 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.156 2.782 15.556 15.949 hybrid contribution 0.521 0.901 -3.177 3.343 sum -1.635 3.683 12.379 13.018 Atomic orbital electron populations 1.21780 0.93195 1.02496 1.03235 1.22882 0.94777 0.81064 1.02425 1.86461 1.25500 1.31666 1.85056 1.23622 0.79837 0.93121 0.72684 1.90646 1.59799 1.42932 1.43289 1.21380 0.90728 0.90177 1.03511 1.62339 1.02451 1.19797 1.40461 1.20072 0.96841 0.96311 0.81766 1.21713 1.40562 1.05538 0.92150 0.92443 1.24917 0.94784 0.94849 0.98775 1.69970 1.40686 1.20295 1.20873 0.86662 0.78426 0.80751 0.82923 1.19754 1.20860 1.20984 1.20537 0.87409 0.92210 1.00939 1.24372 1.00764 1.03349 0.98108 1.20118 0.90269 1.05310 1.02265 1.20749 0.99522 0.94518 0.91490 1.23342 0.96431 1.23856 0.97464 1.19723 0.87752 0.72830 0.80613 1.90862 1.25247 1.48493 1.75329 1.86600 1.38007 1.82376 1.20492 1.23246 0.85925 1.01942 0.94383 1.82919 0.94734 1.64173 1.06871 0.90677 0.91774 0.91576 0.91360 0.91666 0.88727 0.89341 0.94582 0.92439 0.92755 0.90367 0.91117 0.82755 0.83307 0.91924 0.88049 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.29 37.16 0.38 -1.13 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.14 10.22 -39.26 -0.40 -6.54 16 4 C 0.47 8.98 7.67 36.01 0.28 9.25 16 5 O -0.48 -10.96 14.07 -18.75 -0.26 -11.22 16 6 C 0.07 1.25 5.36 -4.97 -0.03 1.22 16 7 N -0.53 -10.39 4.39 -238.96 -1.05 -11.44 16 8 C 0.18 4.31 4.62 -4.98 -0.02 4.28 16 9 C -0.56 -14.19 7.33 -34.44 -0.25 -14.44 16 10 H 0.06 1.39 5.96 -52.48 -0.31 1.07 16 11 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 12 N -0.88 -25.31 13.29 55.43 0.74 -24.57 16 13 Si 0.88 20.42 29.54 -169.99 -5.02 15.40 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.12 1.98 5.25 -4.97 -0.03 1.96 16 18 C -0.15 -2.42 5.26 -35.84 -0.19 -2.60 16 19 C -0.15 -2.57 9.00 -41.42 -0.37 -2.94 16 20 C -0.03 -0.45 10.01 -40.42 -0.40 -0.85 16 21 C -0.29 -4.67 6.45 -36.84 -0.24 -4.91 16 22 C 0.55 8.63 7.92 34.01 0.27 8.90 16 23 O -0.51 -8.98 16.64 -19.36 -0.32 -9.30 16 24 O -0.36 -4.82 10.42 -41.04 -0.43 -5.25 16 25 C 0.04 0.37 10.57 101.05 1.07 1.44 16 26 S 0.24 3.59 22.87 -107.50 -2.46 1.13 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.09 1.30 7.86 -51.93 -0.41 0.89 16 33 H 0.09 1.62 6.53 -51.93 -0.34 1.28 16 34 H 0.04 0.96 6.69 -51.93 -0.35 0.62 16 35 H 0.06 1.63 5.85 -51.93 -0.30 1.33 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.08 1.40 6.19 -51.93 -0.32 1.08 16 38 H 0.07 0.96 7.80 -51.93 -0.41 0.55 16 39 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 40 H 0.15 2.25 8.06 -52.48 -0.42 1.83 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -32.34 380.55 -8.67 -41.01 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.80 Total: 1.99 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 0.60 Total: 3.06 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.31 Total: -36.02 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.41 Total: -32.31 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -2.46 Total: 1.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.34 -8.67 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140524550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.662 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds