Wall clock time and date at job start Sat Apr 11 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.47245 * 2 1 4 4 C 1.34232 * 116.99817 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00419 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99693 * 179.97438 * 4 3 2 7 7 N 1.46899 * 109.46633 * 179.97438 * 6 4 3 8 8 C 1.46897 * 111.00162 * 66.04744 * 7 6 4 9 9 C 1.50704 * 109.47102 * 62.03139 * 8 7 6 10 10 H 1.08003 * 119.99787 * 5.03849 * 9 8 7 11 11 C 1.37877 * 120.00037 * 185.04717 * 9 8 7 12 12 N 1.31510 * 120.00113 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99966 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46814 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47045 * 119.99658 * 13 11 9 16 16 H 1.48499 * 109.46783 * 239.99476 * 13 11 9 17 17 C 1.46901 * 110.99711 * 189.99816 * 7 6 4 18 18 C 1.50705 * 109.47081 * 163.68511 * 17 7 6 19 19 C 1.33864 * 124.51181 * 95.48745 * 18 17 7 20 20 C 1.37417 * 115.10288 * 179.85312 * 19 18 17 21 21 C 1.36749 * 113.28985 * 0.42368 * 20 19 18 22 22 C 1.46391 * 125.45866 * 179.77068 * 21 20 19 23 23 O 1.21628 * 120.00325 * 0.02771 * 22 21 20 24 24 O 1.34900 * 119.99660 * 180.02562 * 22 21 20 25 25 C 1.45205 * 116.99882 * 180.02562 * 24 22 21 26 26 S 1.70613 * 124.52290 * 275.78911 * 18 17 7 27 27 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46946 * 300.00061 * 1 2 3 29 29 H 1.08994 * 109.47058 * 59.99847 * 1 2 3 30 30 H 1.09002 * 109.46946 * 239.99939 * 2 1 3 31 31 H 1.09000 * 109.47467 * 120.00158 * 2 1 3 32 32 H 1.08994 * 109.46950 * 59.99919 * 6 4 3 33 33 H 1.08999 * 109.46828 * 299.99683 * 6 4 3 34 34 H 1.09004 * 109.47103 * 182.02791 * 8 7 6 35 35 H 1.08991 * 109.47304 * 302.03024 * 8 7 6 36 36 H 0.97004 * 119.99899 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.47650 * 283.69086 * 17 7 6 38 38 H 1.09006 * 109.46899 * 43.69048 * 17 7 6 39 39 H 1.07994 * 122.44605 * 0.02562 * 19 18 17 40 40 H 1.08007 * 123.35200 * 180.21878 * 20 19 18 41 41 H 1.08997 * 109.47251 * 60.00263 * 25 24 22 42 42 H 1.09001 * 109.47005 * 179.97438 * 25 24 22 43 43 H 1.09006 * 109.47273 * 300.00005 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 -0.0012 7 7 5.3878 2.8604 -0.0010 8 6 5.8844 2.2762 -1.2540 9 6 5.4881 3.1571 -2.4108 10 1 4.9954 4.1005 -2.2270 11 6 5.7543 2.7587 -3.7036 12 7 6.3545 1.6102 -3.9273 13 14 5.2624 3.8504 -5.1374 14 1 4.6064 5.0788 -4.6219 15 1 6.4722 4.2231 -5.9136 16 1 4.3169 3.1165 -6.0166 17 6 5.9842 4.1817 0.2365 18 6 7.4307 4.0171 0.6263 19 6 8.4597 4.0975 -0.2261 20 6 9.6998 3.9194 0.3387 21 6 9.6518 3.6807 1.6843 22 6 10.8112 3.4492 2.5476 23 8 11.9324 3.4605 2.0763 24 8 10.6360 3.2232 3.8660 25 6 11.8305 3.0022 4.6614 26 16 7.9745 3.6965 2.2113 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5852 3.4697 0.8887 33 1 3.5846 3.4692 -0.8912 34 1 6.9708 2.1976 -1.2128 35 1 5.4533 1.2842 -1.3884 36 1 6.5422 1.3301 -4.8369 37 1 5.9187 4.7788 -0.6730 38 1 5.4461 4.6839 1.0405 39 1 8.3254 4.2910 -1.2800 40 1 10.6203 3.9604 -0.2247 41 1 12.4767 3.8777 4.5976 42 1 11.5489 2.8339 5.7008 43 1 12.3628 2.1295 4.2828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140524550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:06 Heat of formation + Delta-G solvation = -147.351321 kcal Electronic energy + Delta-G solvation = -27195.548463 eV Core-core repulsion = 23139.564591 eV Total energy + Delta-G solvation = -4055.983872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.42558 -41.38036 -39.47200 -38.19881 -37.42822 -36.99665 -34.58958 -32.74035 -32.09158 -29.71993 -29.49180 -27.94941 -26.54000 -25.00878 -24.11165 -23.00667 -22.67598 -21.43180 -20.26240 -19.51034 -18.73124 -18.39696 -17.69759 -17.63300 -17.44127 -17.22939 -16.81598 -16.52987 -16.25053 -15.79070 -15.53788 -15.00985 -14.71392 -14.53204 -14.34129 -14.11946 -13.78222 -13.65757 -13.49287 -13.38306 -13.17517 -13.02772 -12.94652 -12.74293 -12.60432 -12.46374 -12.40211 -12.32701 -12.01978 -11.86706 -11.85823 -11.71726 -11.68044 -11.43729 -11.15667 -10.54359 -9.79505 -9.42969 -9.10094 -8.12132 -6.30930 -0.64676 0.51488 0.96906 1.18945 1.37518 1.39850 1.40185 1.49921 1.63914 1.75101 1.94185 2.38594 3.15560 3.36727 3.83258 3.92717 3.94453 4.03518 4.15693 4.18021 4.30435 4.33638 4.36030 4.38405 4.40968 4.58419 4.65612 4.69742 4.87338 4.88955 4.96298 5.02338 5.17714 5.18730 5.23058 5.31201 5.39995 5.43169 5.57237 5.85041 5.94514 6.17346 6.35355 6.57062 6.90700 6.98846 7.40531 8.91711 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009690 B = 0.003490 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.981636 B = 8020.266479 C =10174.324591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 O -0.364 6.364 4 C 0.463 3.537 5 O -0.526 6.526 6 C 0.070 3.930 7 N -0.531 5.531 8 C 0.197 3.803 9 C -0.552 4.552 10 H 0.073 0.927 11 C 0.014 3.986 12 N -0.927 5.927 13 Si 0.951 3.049 14 H -0.255 1.255 15 H -0.284 1.284 16 H -0.287 1.287 17 C 0.119 3.881 18 C -0.165 4.165 19 C -0.161 4.161 20 C -0.039 4.039 21 C -0.306 4.306 22 C 0.547 3.453 23 O -0.534 6.534 24 O -0.359 6.359 25 C 0.030 3.970 26 S 0.308 5.692 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.006 0.994 35 H 0.015 0.985 36 H 0.261 0.739 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 5.383 16.026 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.307 3.693 5 O -0.414 6.414 6 C -0.059 4.059 7 N -0.256 5.256 8 C 0.070 3.930 9 C -0.591 4.591 10 H 0.091 0.909 11 C -0.186 4.186 12 N -0.567 5.567 13 Si 0.776 3.224 14 H -0.178 1.178 15 H -0.210 1.210 16 H -0.213 1.213 17 C -0.009 4.009 18 C -0.285 4.285 19 C -0.192 4.192 20 C -0.074 4.074 21 C -0.424 4.424 22 C 0.393 3.607 23 O -0.426 6.426 24 O -0.275 6.275 25 C -0.063 4.063 26 S 0.578 5.422 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.103 0.897 34 H 0.024 0.976 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.086 0.914 42 H 0.156 0.844 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.956 4.431 17.622 18.596 hybrid contribution 1.055 0.342 -3.645 3.810 sum -2.902 4.772 13.977 15.052 Atomic orbital electron populations 1.21792 0.89762 1.04322 1.03840 1.23207 0.97409 0.79711 1.01761 1.86461 1.24024 1.33265 1.84356 1.24069 0.80383 0.93390 0.71483 1.90637 1.60941 1.44382 1.45478 1.21583 0.89046 0.89596 1.05667 1.62149 1.04122 1.21773 1.37519 1.19532 0.94663 0.94700 0.84090 1.22032 1.39061 1.05710 0.92254 0.90929 1.25770 0.95004 0.96002 1.01782 1.70128 1.42812 1.22524 1.21216 0.85615 0.77832 0.79439 0.79468 1.17804 1.21031 1.21342 1.20646 0.87742 0.90507 1.02048 1.24525 1.00762 1.03707 0.99555 1.20026 0.91142 1.06391 1.01614 1.20755 0.99387 0.95204 0.92008 1.23562 0.97750 1.23508 0.97586 1.19710 0.87178 0.72359 0.81420 1.90845 1.26082 1.49697 1.75972 1.86581 1.39900 1.81736 1.19315 1.23642 0.85019 1.02167 0.95488 1.82572 0.92895 1.62343 1.04434 0.88253 0.90427 0.91632 0.93256 0.91283 0.83701 0.89668 0.97612 0.96713 0.93042 0.91527 0.86762 0.84672 0.83063 0.91421 0.84357 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 10.29 71.98 0.74 -1.78 16 2 C 0.05 1.44 6.19 71.98 0.45 1.89 16 3 O -0.36 -11.74 10.22 -51.44 -0.53 -12.27 16 4 C 0.46 17.69 7.67 71.24 0.55 18.23 16 5 O -0.53 -24.59 14.07 21.97 0.31 -24.28 16 6 C 0.07 2.32 5.36 85.56 0.46 2.77 16 7 N -0.53 -20.64 4.39 -909.93 -4.00 -24.63 16 8 C 0.20 9.97 4.62 85.56 0.40 10.36 16 9 C -0.55 -28.19 7.33 25.60 0.19 -28.00 16 10 H 0.07 3.43 5.96 -2.91 -0.02 3.41 16 11 C 0.01 0.75 5.46 84.66 0.46 1.22 16 12 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 13 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 14 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 17 C 0.12 3.78 5.25 85.56 0.45 4.23 16 18 C -0.16 -5.36 5.26 24.69 0.13 -5.23 16 19 C -0.16 -5.69 9.00 21.08 0.19 -5.50 16 20 C -0.04 -1.28 10.01 21.73 0.22 -1.06 16 21 C -0.31 -9.62 6.45 24.04 0.16 -9.46 16 22 C 0.55 16.95 7.92 69.94 0.55 17.50 16 23 O -0.53 -18.78 16.64 19.42 0.32 -18.46 16 24 O -0.36 -9.05 10.42 -58.15 -0.61 -9.66 16 25 C 0.03 0.50 10.57 113.37 1.20 1.70 16 26 S 0.31 8.52 22.87 -56.49 -1.29 7.23 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 32 H 0.15 3.35 7.86 -2.39 -0.02 3.33 16 33 H 0.09 2.95 6.53 -2.39 -0.02 2.93 16 34 H 0.01 0.32 6.69 -2.38 -0.02 0.31 16 35 H 0.01 0.88 5.85 -2.39 -0.01 0.87 16 36 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.07 2.29 6.19 -2.39 -0.01 2.27 16 38 H 0.11 2.63 7.80 -2.38 -0.02 2.61 16 39 H 0.14 5.20 8.06 -2.91 -0.02 5.18 16 40 H 0.15 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.14 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -73.34 380.55 3.69 -69.65 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 1.03 Total: 16.32 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 6.13 Total: 6.87 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -3.71 Total: -79.69 kcal Atomic # 8 Polarization: -64.16 SS G_CDS: -0.50 Total: -64.66 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 8.52 SS G_CDS: -1.29 Total: 7.23 kcal Total: -73.34 3.69 -69.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140524550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.697 kcal (2) G-P(sol) polarization free energy of solvation -73.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds