Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.52995 * 109.46824 * 85.00335 * 4 3 2 6 6 C 1.50706 * 109.47335 * 180.02562 * 5 4 3 7 7 O 1.20826 * 119.99587 * 359.97438 * 6 5 4 8 8 O 1.34227 * 120.00347 * 180.02562 * 6 5 4 9 9 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 10 10 O 1.42095 * 106.40469 * 23.26116 * 9 3 2 11 11 O 1.42098 * 106.40441 * 156.18457 * 9 3 2 12 12 C 1.76207 * 107.21624 * 269.72430 * 9 3 2 13 13 C 1.38238 * 119.99673 * 269.72920 * 12 9 3 14 14 C 1.38231 * 119.99694 * 179.76874 * 13 12 9 15 15 C 1.38237 * 120.00023 * 0.50296 * 14 13 12 16 16 C 1.50703 * 120.00079 * 179.72591 * 15 14 13 17 17 C 1.50697 * 109.47112 * 270.01993 * 16 15 14 18 18 H 1.07999 * 119.99838 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99840 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99924 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00207 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46926 * 89.99709 * 21 19 17 23 23 H 1.48494 * 109.47200 * 210.00053 * 21 19 17 24 24 H 1.48504 * 109.46978 * 330.00162 * 21 19 17 25 25 C 1.38232 * 120.00056 * 359.74738 * 15 14 13 26 26 C 1.38224 * 119.99967 * 90.00006 * 12 9 3 27 27 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 28 28 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 29 29 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 31 31 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 32 32 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 33 33 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 34 34 H 1.09003 * 109.47335 * 299.99547 * 5 4 3 35 35 H 1.09002 * 109.47311 * 59.99668 * 5 4 3 36 36 H 0.96694 * 116.99863 * 179.97438 * 8 6 5 37 37 H 1.07998 * 120.00071 * 359.97438 * 13 12 9 38 38 H 1.08002 * 120.00049 * 180.22469 * 14 13 12 39 39 H 1.09002 * 109.46915 * 30.02122 * 16 15 14 40 40 H 1.09004 * 109.46770 * 150.02118 * 16 15 14 41 41 H 0.96998 * 120.00074 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00465 * 179.97438 * 25 15 14 43 43 H 1.08006 * 120.00306 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.5151 1.7839 1.8918 6 6 3.6589 2.5317 3.1923 7 8 2.7676 3.2510 3.5772 8 8 4.7774 2.3995 3.9225 9 16 2.4057 2.1224 -1.4293 10 8 1.6809 1.4412 -2.4440 11 8 2.2940 3.5203 -1.1995 12 6 4.1112 1.8034 -1.7368 13 6 5.0735 2.6771 -1.2661 14 6 6.4117 2.4244 -1.5032 15 6 6.7870 1.3035 -2.2199 16 6 8.2455 1.0312 -2.4837 17 6 8.6526 1.6861 -3.7785 18 1 7.9278 2.2440 -4.3526 19 6 9.9507 1.5738 -4.2295 20 7 10.3061 2.1457 -5.3592 21 14 11.2046 0.6093 -3.2360 22 1 11.1937 -0.8107 -3.6702 23 1 12.5566 1.1834 -3.4543 24 1 10.8601 0.6885 -1.7936 25 6 5.8244 0.4325 -2.6950 26 6 4.4864 0.6826 -2.4534 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0923 3.1802 1.0756 33 1 1.3617 1.8097 1.9453 34 1 3.5812 0.7123 2.0801 35 1 4.3117 2.0828 1.2103 36 1 4.8237 2.8993 4.7490 37 1 4.7801 3.5554 -0.7103 38 1 7.1638 3.1050 -1.1324 39 1 8.8441 1.4361 -1.6677 40 1 8.4074 -0.0445 -2.5540 41 1 11.2193 2.0664 -5.6766 42 1 6.1175 -0.4430 -3.2553 43 1 3.7343 0.0021 -2.8245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596318921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = -148.745005 kcal Electronic energy + Delta-G solvation = -27835.146884 eV Core-core repulsion = 23779.102578 eV Total energy + Delta-G solvation = -4056.044306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57706 -38.95655 -37.50020 -37.32480 -36.38230 -35.83949 -33.73069 -32.60579 -31.77674 -30.70705 -29.68283 -28.01580 -25.19319 -23.54736 -23.00917 -22.47559 -21.33774 -20.71552 -19.03311 -18.49907 -17.93968 -17.54412 -17.00949 -16.94080 -16.35136 -16.07079 -15.24467 -15.13204 -14.50478 -14.37155 -14.26454 -14.22138 -13.89371 -13.73922 -13.38032 -13.22777 -12.84681 -12.67343 -12.52617 -12.43531 -12.16024 -12.06048 -12.01846 -11.93045 -11.83297 -11.82084 -11.38109 -11.19717 -10.99665 -10.97048 -10.90865 -10.56597 -10.27990 -10.14422 -9.59847 -9.45573 -8.73551 -8.69538 -8.49542 -6.21126 -4.22972 0.33212 1.19271 1.66311 1.87434 2.53119 3.01508 3.18001 3.26709 3.27164 3.67398 3.97130 4.24732 4.28067 4.36278 4.39557 4.67913 4.90820 4.97494 4.98847 5.04038 5.11279 5.13511 5.15083 5.20645 5.43241 5.49568 5.52459 5.59509 5.68786 5.76862 5.84986 5.98066 6.09754 6.16883 6.18011 6.26190 6.40560 6.65075 6.65377 6.77589 7.23365 7.25484 7.50435 7.55463 8.31561 8.82402 9.36941 10.91375 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.003320 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.318654 B = 8430.631267 C = 9748.354583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.118 3.882 3 N -0.998 5.998 4 C 0.128 3.872 5 C -0.144 4.144 6 C 0.486 3.514 7 O -0.516 6.516 8 O -0.515 6.515 9 S 2.690 3.310 10 O -0.956 6.956 11 O -0.959 6.959 12 C -0.702 4.702 13 C -0.027 4.027 14 C -0.140 4.140 15 C 0.032 3.968 16 C 0.006 3.994 17 C -0.521 4.521 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.141 4.141 26 C -0.021 4.021 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.411 0.589 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.267 0.733 42 H 0.130 0.870 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 -5.179 17.528 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.007 4.007 3 N -0.834 5.834 4 C 0.002 3.998 5 C -0.184 4.184 6 C 0.328 3.672 7 O -0.404 6.404 8 O -0.327 6.327 9 S 2.783 3.217 10 O -0.946 6.946 11 O -0.949 6.949 12 C -0.791 4.791 13 C -0.046 4.046 14 C -0.159 4.159 15 C 0.031 3.969 16 C -0.031 4.031 17 C -0.559 4.559 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.531 5.531 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.160 4.160 26 C -0.041 4.041 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.270 0.730 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.148 0.852 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.617 -4.702 16.618 23.966 hybrid contribution 1.700 -0.413 0.961 1.996 sum -14.916 -5.115 17.579 23.615 Atomic orbital electron populations 1.22227 0.95640 1.02609 1.02889 1.21297 0.94851 0.80933 1.03589 1.57704 1.79794 1.24138 1.21733 1.21139 0.95186 0.98346 0.85161 1.21944 1.01779 1.02532 0.92106 1.23248 0.78890 0.79314 0.85733 1.90748 1.41129 1.37478 1.71041 1.84555 1.41726 1.68454 1.37937 1.01973 0.74169 0.73238 0.72280 1.93563 1.70532 1.75314 1.55201 1.93559 1.86691 1.29731 1.84914 1.30445 1.23824 1.07318 1.17545 1.20759 0.92858 0.95919 0.95098 1.21223 0.95512 0.98215 1.00984 1.20710 0.97954 0.90948 0.87244 1.18989 0.87600 0.97803 0.98719 1.20816 0.96716 1.34095 1.04260 0.90667 1.24988 0.98147 0.95090 0.94787 1.69887 1.18956 1.43682 1.20612 0.86789 0.80962 0.80509 0.81151 1.20023 1.21056 1.18924 1.21232 0.92146 1.01187 1.01458 1.20764 0.96931 0.93715 0.92670 0.92217 0.91650 0.91296 0.89589 0.90192 0.87641 0.88718 0.86771 0.86980 0.72960 0.85230 0.85199 0.94782 0.95222 0.92340 0.85196 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.12 0.87 6.06 -4.04 -0.02 0.84 16 3 N -1.00 -9.39 2.78 -114.38 -0.32 -9.71 16 4 C 0.13 1.10 4.97 -4.04 -0.02 1.08 16 5 C -0.14 -1.11 6.13 -27.88 -0.17 -1.29 16 6 C 0.49 4.29 8.33 36.01 0.30 4.59 16 7 O -0.52 -5.93 16.74 -18.75 -0.31 -6.24 16 8 O -0.51 -3.70 13.42 -39.25 -0.53 -4.23 16 9 S 2.69 35.82 5.65 -107.50 -0.61 35.21 16 10 O -0.96 -14.58 16.25 -57.17 -0.93 -15.51 16 11 O -0.96 -15.06 15.83 -57.17 -0.90 -15.96 16 12 C -0.70 -10.24 5.97 -39.59 -0.24 -10.48 16 13 C -0.03 -0.41 8.47 -39.58 -0.34 -0.74 16 14 C -0.14 -2.42 9.70 -39.58 -0.38 -2.80 16 15 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16 16 C 0.01 0.13 4.17 -29.04 -0.12 0.01 16 17 C -0.52 -14.10 9.65 -34.44 -0.33 -14.43 16 18 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 20 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 21 Si 0.88 20.32 27.47 -169.99 -4.67 15.65 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 25 C -0.14 -2.42 9.70 -39.58 -0.38 -2.80 16 26 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.63 7.61 -51.93 -0.40 0.23 16 31 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 32 H 0.11 1.06 6.87 -51.93 -0.36 0.70 16 33 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.11 0.93 7.06 -51.93 -0.37 0.56 16 36 H 0.41 1.28 9.10 45.56 0.41 1.69 16 37 H 0.13 1.68 7.61 -52.49 -0.40 1.28 16 38 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.03 0.74 7.14 -51.93 -0.37 0.36 16 40 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.13 1.64 7.62 -52.48 -0.40 1.24 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -35.45 378.00 -9.36 -44.81 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.23 Total: 1.65 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -2.33 Total: -25.59 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.46 Total: -35.49 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.67 Total: -41.94 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Atomic # 16 Polarization: 35.82 SS G_CDS: -0.61 Total: 35.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.45 -9.36 -44.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596318921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.939 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds