Wall clock time and date at job start Sat Apr 11 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99432 * 2 1 4 4 O 1.20824 * 120.00590 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99496 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47111 * 180.02562 * 5 3 2 7 7 C 1.36938 * 119.99611 * 269.99664 * 6 5 3 8 8 H 1.08000 * 119.99515 * 187.78664 * 7 6 5 9 9 C 1.38811 * 120.00059 * 7.79236 * 7 6 5 10 10 N 1.31615 * 120.00063 * 25.58191 * 9 7 6 11 11 Si 1.86797 * 119.99668 * 205.58150 * 9 7 6 12 12 H 1.48499 * 109.47374 * 60.00083 * 11 9 7 13 13 H 1.48509 * 109.47042 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47457 * 299.99677 * 11 9 7 15 15 C 1.46495 * 120.00061 * 89.99697 * 6 5 3 16 16 C 1.53001 * 109.47303 * 271.83578 * 15 6 5 17 17 C 1.52994 * 109.47486 * 180.02562 * 16 15 6 18 18 S 1.81398 * 109.47435 * 180.02562 * 17 16 15 19 19 O 1.42094 * 110.54700 * 68.37119 * 18 17 16 20 20 O 1.42107 * 110.54067 * 291.62346 * 18 17 16 21 21 C 1.76199 * 104.45078 * 180.02562 * 18 17 16 22 22 C 1.38233 * 120.00184 * 89.99788 * 21 18 17 23 23 C 1.38231 * 120.00508 * 179.97438 * 22 21 18 24 24 C 1.38244 * 119.99610 * 359.95832 * 23 22 21 25 25 C 1.38235 * 119.99855 * 0.27701 * 24 23 22 26 26 C 1.38231 * 119.99924 * 269.97314 * 21 18 17 27 27 H 1.09009 * 109.47135 * 60.00752 * 1 2 3 28 28 H 1.09005 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47377 * 300.00422 * 1 2 3 30 30 H 1.08992 * 109.47407 * 59.99537 * 5 3 2 31 31 H 1.09003 * 109.46844 * 299.99243 * 5 3 2 32 32 H 0.97005 * 119.99794 * 180.02562 * 10 9 7 33 33 H 1.08996 * 109.47018 * 151.84117 * 15 6 5 34 34 H 1.08994 * 109.47710 * 31.83821 * 15 6 5 35 35 H 1.09009 * 109.46961 * 60.00215 * 16 15 6 36 36 H 1.09000 * 109.47582 * 300.00544 * 16 15 6 37 37 H 1.09000 * 109.47178 * 59.99892 * 17 16 15 38 38 H 1.09007 * 109.46904 * 300.00339 * 17 16 15 39 39 H 1.08010 * 120.00069 * 359.97438 * 22 21 18 40 40 H 1.08001 * 120.00473 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.99946 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99676 * 179.73043 * 25 24 23 43 43 H 1.08000 * 120.00163 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1763 3.3366 -1.1846 8 1 4.6019 4.3292 -1.1885 9 6 3.8264 2.7267 -2.3815 10 7 2.8910 1.8010 -2.3995 11 14 4.6833 3.2197 -3.9664 12 1 6.1400 2.9591 -3.8434 13 1 4.1317 2.4271 -5.0946 14 1 4.4588 4.6653 -4.2215 15 6 4.1888 3.3820 1.2700 16 6 2.8670 3.9968 1.7344 17 6 3.0834 4.7306 3.0593 18 16 1.5160 5.4590 3.6103 19 8 0.5967 4.4413 3.9821 20 8 1.1269 6.5174 2.7456 21 6 1.9136 6.2620 5.1274 22 6 2.3259 7.5814 5.1238 23 6 2.6373 8.2116 6.3140 24 6 2.5356 7.5225 7.5081 25 6 2.1280 6.2016 7.5113 26 6 1.8128 5.5727 6.3213 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9564 0.7806 -0.8890 31 1 3.9556 0.7811 0.8909 32 1 2.6468 1.3745 -3.2359 33 1 4.9279 4.1711 1.1321 34 1 4.5455 2.6774 2.0212 35 1 2.1278 3.2076 1.8723 36 1 2.5102 4.7015 0.9832 37 1 3.8224 5.5198 2.9210 38 1 3.4403 4.0262 3.8107 39 1 2.4047 8.1200 4.1909 40 1 2.9598 9.2423 6.3111 41 1 2.7792 8.0147 8.4381 42 1 2.0527 5.6620 8.4439 43 1 1.4907 4.5418 6.3242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080873054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:28 Heat of formation + Delta-G solvation = -98.321686 kcal Electronic energy + Delta-G solvation = -27888.547791 eV Core-core repulsion = 23834.690004 eV Total energy + Delta-G solvation = -4053.857787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -39.29896 -38.96100 -36.89191 -36.45961 -35.71483 -34.66899 -33.40554 -31.53176 -31.26620 -30.92784 -28.22668 -26.30407 -25.89152 -23.54556 -22.96561 -22.62426 -20.80161 -19.69825 -18.95789 -17.94348 -17.03424 -16.35647 -16.20487 -16.03871 -15.99104 -15.36785 -15.10412 -15.05094 -14.73863 -14.64116 -14.30336 -13.77006 -13.67448 -13.28504 -13.19484 -12.86789 -12.38609 -12.19494 -12.11912 -11.90020 -11.82435 -11.79349 -11.60660 -11.48785 -11.28808 -11.06446 -10.84486 -10.78317 -10.56820 -10.42676 -10.21514 -10.07675 -9.89270 -9.59485 -9.52978 -9.30119 -9.07368 -8.54371 -7.20848 -5.99324 -3.23771 0.15517 0.64657 1.03501 3.03420 3.26528 3.35396 3.41847 3.42635 3.88049 4.03109 4.06363 4.20530 4.42668 4.57437 4.61865 4.71365 4.87116 4.95592 5.06146 5.21898 5.28441 5.41370 5.42388 5.66410 5.68539 5.84464 5.85185 5.89600 5.93173 5.95459 6.07201 6.08548 6.15657 6.26307 6.31086 6.57268 6.61466 6.62436 6.94348 7.05405 7.63624 7.79553 8.09030 8.95054 9.38489 9.65269 10.04511 11.11741 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.003147 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.861353 B = 8896.113218 C = 9961.552253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.382 6.382 3 C 0.464 3.536 4 O -0.505 6.505 5 C 0.184 3.816 6 N -0.565 5.565 7 C -0.257 4.257 8 H 0.085 0.915 9 C 0.002 3.998 10 N -0.899 5.899 11 Si 0.910 3.090 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.156 3.844 16 C -0.135 4.135 17 C -0.587 4.587 18 S 2.479 3.521 19 O -0.941 6.941 20 O -0.939 6.939 21 C -0.657 4.657 22 C -0.026 4.026 23 C -0.143 4.143 24 C -0.073 4.073 25 C -0.143 4.143 26 C -0.026 4.026 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 4.773 17.875 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.300 6.300 3 C 0.304 3.696 4 O -0.390 6.390 5 C 0.055 3.945 6 N -0.284 5.284 7 C -0.386 4.386 8 H 0.102 0.898 9 C -0.196 4.196 10 N -0.543 5.543 11 Si 0.739 3.261 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.209 1.209 15 C 0.028 3.972 16 C -0.177 4.177 17 C -0.719 4.719 18 S 2.660 3.340 19 O -0.938 6.938 20 O -0.936 6.936 21 C -0.742 4.742 22 C -0.044 4.044 23 C -0.161 4.161 24 C -0.091 4.091 25 C -0.162 4.162 26 C -0.045 4.045 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.134 0.866 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.103 5.024 17.379 18.124 hybrid contribution 0.429 0.600 -0.379 0.830 sum 1.532 5.625 16.999 17.971 Atomic orbital electron populations 1.22873 0.79792 1.01301 1.01402 1.86535 1.21000 1.36732 1.85707 1.25533 0.93526 0.80289 0.70268 1.90461 1.66677 1.36363 1.45491 1.20580 0.85635 0.86550 1.01772 1.44395 1.74852 1.07290 1.01844 1.19324 1.35158 1.01345 0.82759 0.89758 1.24777 0.97341 0.99333 0.98136 1.69848 1.27607 1.30174 1.26712 0.86226 0.79553 0.77904 0.82371 1.20906 1.21679 1.20920 1.20969 0.93389 0.95322 0.87544 1.22336 1.03733 1.00621 0.91012 1.30299 1.20112 1.12077 1.09405 1.06334 0.78424 0.75105 0.74088 1.93542 1.58968 1.58838 1.82408 1.93552 1.80823 1.54741 1.64497 1.30950 1.16528 1.06577 1.20127 1.21040 0.91447 0.92378 0.99584 1.21321 1.01682 1.00560 0.92576 1.21474 0.94873 0.94426 0.98294 1.21315 1.01057 0.95441 0.98356 1.21026 0.92304 0.99929 0.91241 0.92847 0.90196 0.93445 0.86566 0.92800 0.92968 0.92172 0.93505 0.90234 0.89902 0.85047 0.85254 0.84025 0.85099 0.85400 0.85117 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.35 10.57 -39.24 -0.41 -8.76 16 3 C 0.46 11.21 5.89 36.01 0.21 11.42 16 4 O -0.50 -13.60 13.52 -18.75 -0.25 -13.86 16 5 C 0.18 4.15 5.58 -5.19 -0.03 4.13 16 6 N -0.57 -13.13 2.09 -174.61 -0.37 -13.49 16 7 C -0.26 -6.63 9.70 -15.06 -0.15 -6.77 16 8 H 0.08 2.11 7.92 -52.49 -0.42 1.70 16 9 C 0.00 0.07 4.89 -17.43 -0.09 -0.02 16 10 N -0.90 -24.83 9.01 55.49 0.50 -24.33 16 11 Si 0.91 21.02 29.62 -169.99 -5.04 15.99 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.16 2.90 5.71 -4.04 -0.02 2.88 16 16 C -0.14 -2.51 4.74 -26.73 -0.13 -2.64 16 17 C -0.59 -7.68 5.98 37.15 0.22 -7.46 16 18 S 2.48 37.37 5.16 -107.50 -0.55 36.82 16 19 O -0.94 -16.95 17.13 -57.54 -0.99 -17.94 16 20 O -0.94 -17.18 17.12 -57.54 -0.99 -18.16 16 21 C -0.66 -8.10 5.66 -39.59 -0.22 -8.32 16 22 C -0.03 -0.29 9.47 -39.59 -0.37 -0.66 16 23 C -0.14 -1.28 10.05 -39.58 -0.40 -1.68 16 24 C -0.07 -0.59 10.05 -39.58 -0.40 -0.99 16 25 C -0.14 -1.27 10.05 -39.58 -0.40 -1.67 16 26 C -0.03 -0.29 9.47 -39.58 -0.37 -0.66 16 27 H 0.05 1.05 8.13 -51.92 -0.42 0.62 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.12 2.82 6.27 -51.93 -0.33 2.50 16 31 H 0.05 1.02 7.91 -51.93 -0.41 0.60 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.06 1.03 8.00 -51.93 -0.42 0.62 16 34 H 0.05 0.74 7.92 -51.93 -0.41 0.33 16 35 H 0.08 1.64 6.39 -51.92 -0.33 1.31 16 36 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.13 1.37 8.14 -51.92 -0.42 0.94 16 38 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 39 H 0.14 1.45 7.57 -52.48 -0.40 1.05 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.14 1.40 7.57 -52.49 -0.40 1.00 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -35.94 374.21 -9.58 -45.52 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.04 Total: 3.21 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.08 Total: -10.63 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.13 Total: -37.82 kcal Atomic # 8 Polarization: -56.08 SS G_CDS: -2.64 Total: -58.72 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.04 Total: 15.99 kcal Atomic # 16 Polarization: 37.37 SS G_CDS: -0.55 Total: 36.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.94 -9.58 -45.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080873054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.806 kcal (2) G-P(sol) polarization free energy of solvation -35.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds