Wall clock time and date at job start Sat Apr 11 2020 06:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99432 * 2 1 4 4 O 1.20824 * 120.00590 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99496 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47111 * 180.02562 * 5 3 2 7 7 C 1.36938 * 119.99611 * 269.99664 * 6 5 3 8 8 H 1.08000 * 119.99515 * 187.78664 * 7 6 5 9 9 C 1.38811 * 120.00059 * 7.79236 * 7 6 5 10 10 N 1.31615 * 120.00063 * 25.58191 * 9 7 6 11 11 Si 1.86797 * 119.99668 * 205.58150 * 9 7 6 12 12 H 1.48499 * 109.47374 * 60.00083 * 11 9 7 13 13 H 1.48509 * 109.47042 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47457 * 299.99677 * 11 9 7 15 15 C 1.46495 * 120.00061 * 89.99697 * 6 5 3 16 16 C 1.53001 * 109.47303 * 271.83578 * 15 6 5 17 17 C 1.52994 * 109.47486 * 180.02562 * 16 15 6 18 18 S 1.81398 * 109.47435 * 180.02562 * 17 16 15 19 19 O 1.42094 * 110.54700 * 68.37119 * 18 17 16 20 20 O 1.42107 * 110.54067 * 291.62346 * 18 17 16 21 21 C 1.76199 * 104.45078 * 180.02562 * 18 17 16 22 22 C 1.38233 * 120.00184 * 89.99788 * 21 18 17 23 23 C 1.38231 * 120.00508 * 179.97438 * 22 21 18 24 24 C 1.38244 * 119.99610 * 359.95832 * 23 22 21 25 25 C 1.38235 * 119.99855 * 0.27701 * 24 23 22 26 26 C 1.38231 * 119.99924 * 269.97314 * 21 18 17 27 27 H 1.09009 * 109.47135 * 60.00752 * 1 2 3 28 28 H 1.09005 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47377 * 300.00422 * 1 2 3 30 30 H 1.08992 * 109.47407 * 59.99537 * 5 3 2 31 31 H 1.09003 * 109.46844 * 299.99243 * 5 3 2 32 32 H 0.97005 * 119.99794 * 180.02562 * 10 9 7 33 33 H 1.08996 * 109.47018 * 151.84117 * 15 6 5 34 34 H 1.08994 * 109.47710 * 31.83821 * 15 6 5 35 35 H 1.09009 * 109.46961 * 60.00215 * 16 15 6 36 36 H 1.09000 * 109.47582 * 300.00544 * 16 15 6 37 37 H 1.09000 * 109.47178 * 59.99892 * 17 16 15 38 38 H 1.09007 * 109.46904 * 300.00339 * 17 16 15 39 39 H 1.08010 * 120.00069 * 359.97438 * 22 21 18 40 40 H 1.08001 * 120.00473 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.99946 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99676 * 179.73043 * 25 24 23 43 43 H 1.08000 * 120.00163 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1763 3.3366 -1.1846 8 1 4.6019 4.3292 -1.1885 9 6 3.8264 2.7267 -2.3815 10 7 2.8910 1.8010 -2.3995 11 14 4.6833 3.2197 -3.9664 12 1 6.1400 2.9591 -3.8434 13 1 4.1317 2.4271 -5.0946 14 1 4.4588 4.6653 -4.2215 15 6 4.1888 3.3820 1.2700 16 6 2.8670 3.9968 1.7344 17 6 3.0834 4.7306 3.0593 18 16 1.5160 5.4590 3.6103 19 8 0.5967 4.4413 3.9821 20 8 1.1269 6.5174 2.7456 21 6 1.9136 6.2620 5.1274 22 6 2.3259 7.5814 5.1238 23 6 2.6373 8.2116 6.3140 24 6 2.5356 7.5225 7.5081 25 6 2.1280 6.2016 7.5113 26 6 1.8128 5.5727 6.3213 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9564 0.7806 -0.8890 31 1 3.9556 0.7811 0.8909 32 1 2.6468 1.3745 -3.2359 33 1 4.9279 4.1711 1.1321 34 1 4.5455 2.6774 2.0212 35 1 2.1278 3.2076 1.8723 36 1 2.5102 4.7015 0.9832 37 1 3.8224 5.5198 2.9210 38 1 3.4403 4.0262 3.8107 39 1 2.4047 8.1200 4.1909 40 1 2.9598 9.2423 6.3111 41 1 2.7792 8.0147 8.4381 42 1 2.0527 5.6620 8.4439 43 1 1.4907 4.5418 6.3242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080873054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:26 Heat of formation + Delta-G solvation = -122.316563 kcal Electronic energy + Delta-G solvation = -27889.588287 eV Core-core repulsion = 23834.690004 eV Total energy + Delta-G solvation = -4054.898283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.78405 -40.03174 -38.20002 -38.13753 -37.02583 -36.49660 -35.00657 -32.73271 -32.28540 -31.98697 -29.91169 -27.79849 -27.63256 -24.70163 -23.97710 -23.69028 -22.34139 -21.48322 -20.05247 -19.00552 -18.80368 -18.04316 -17.67720 -17.20283 -17.05840 -16.90940 -16.76431 -16.44503 -16.10576 -15.61703 -15.50354 -15.37143 -14.82622 -14.47455 -14.45663 -14.01615 -13.91033 -13.64707 -13.40838 -13.24954 -13.21121 -13.18328 -13.11289 -12.88539 -12.69351 -12.58927 -12.33417 -12.19929 -12.04634 -12.01316 -11.83616 -11.57776 -11.45231 -11.29299 -10.93560 -10.48843 -10.35420 -10.03142 -9.06262 -7.96234 -5.22116 -0.96498 -0.16911 0.31224 1.50659 1.52342 1.59294 1.95573 2.04113 2.35994 2.47452 2.57634 2.91520 3.11870 3.25277 3.43373 3.78263 3.91881 3.94602 3.98164 4.12513 4.37128 4.38788 4.41112 4.41262 4.46843 4.51846 4.55191 4.66437 4.71105 4.75008 4.86546 4.94722 4.98171 5.11124 5.13621 5.23313 5.28778 5.39155 5.44284 5.65321 5.88633 5.99343 6.20744 7.02548 7.52475 7.81265 8.15535 9.12940 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.003147 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.861353 B = 8896.113218 C = 9961.552253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.385 6.385 3 C 0.462 3.538 4 O -0.542 6.542 5 C 0.183 3.817 6 N -0.582 5.582 7 C -0.262 4.262 8 H 0.086 0.914 9 C -0.050 4.050 10 N -0.927 5.927 11 Si 0.969 3.031 12 H -0.270 1.270 13 H -0.301 1.301 14 H -0.286 1.286 15 C 0.149 3.851 16 C -0.132 4.132 17 C -0.570 4.570 18 S 2.478 3.522 19 O -0.982 6.982 20 O -0.985 6.985 21 C -0.661 4.661 22 C -0.046 4.046 23 C -0.143 4.143 24 C -0.064 4.064 25 C -0.142 4.142 26 C -0.044 4.044 27 H 0.033 0.967 28 H 0.126 0.874 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.141 0.859 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 5.474 21.218 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.302 6.302 3 C 0.304 3.696 4 O -0.430 6.430 5 C 0.053 3.947 6 N -0.301 5.301 7 C -0.391 4.391 8 H 0.104 0.896 9 C -0.245 4.245 10 N -0.574 5.574 11 Si 0.798 3.202 12 H -0.196 1.196 13 H -0.228 1.228 14 H -0.213 1.213 15 C 0.022 3.978 16 C -0.174 4.174 17 C -0.703 4.703 18 S 2.666 3.334 19 O -0.979 6.979 20 O -0.982 6.982 21 C -0.750 4.750 22 C -0.065 4.065 23 C -0.161 4.161 24 C -0.082 4.082 25 C -0.160 4.160 26 C -0.063 4.063 27 H 0.051 0.949 28 H 0.144 0.856 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.183 0.817 38 H 0.188 0.812 39 H 0.159 0.841 40 H 0.177 0.823 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.097 5.698 20.695 21.687 hybrid contribution -0.221 0.465 -1.176 1.284 sum 2.876 6.164 19.518 20.669 Atomic orbital electron populations 1.23134 0.77905 1.04066 1.00503 1.86501 1.22871 1.35625 1.85224 1.25911 0.94297 0.80211 0.69152 1.90447 1.67630 1.37637 1.47301 1.20632 0.84683 0.86749 1.02625 1.44569 1.75040 1.07779 1.02676 1.19623 1.34097 1.01295 0.84089 0.89643 1.25447 0.98160 1.00127 1.00752 1.70008 1.29189 1.31840 1.26365 0.85311 0.79024 0.76886 0.78991 1.19609 1.22784 1.21279 1.21248 0.93364 0.96501 0.86648 1.22052 1.03034 0.99469 0.92816 1.30096 1.19283 1.13447 1.07463 1.05619 0.78795 0.74330 0.74686 1.93486 1.61161 1.60016 1.83211 1.93492 1.82190 1.55932 1.66619 1.30249 1.19284 1.07196 1.18290 1.21234 0.92320 0.92081 1.00884 1.21700 1.00621 1.01868 0.91935 1.21976 0.92751 0.94048 0.99432 1.21712 0.99747 0.96034 0.98535 1.21247 0.93004 1.00429 0.91651 0.94855 0.85563 0.93285 0.88569 0.88729 0.94100 0.90549 0.89771 0.92854 0.93817 0.81681 0.81227 0.84131 0.82333 0.81682 0.82154 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 10.56 113.37 1.20 2.60 16 2 O -0.39 -16.96 10.57 -51.35 -0.54 -17.50 16 3 C 0.46 22.83 5.89 71.24 0.42 23.25 16 4 O -0.54 -30.44 13.52 21.97 0.30 -30.14 16 5 C 0.18 8.25 5.58 85.63 0.48 8.73 16 6 N -0.58 -26.99 2.09 -706.35 -1.48 -28.47 16 7 C -0.26 -13.66 9.70 84.03 0.81 -12.84 16 8 H 0.09 4.31 7.92 -2.91 -0.02 4.29 16 9 C -0.05 -2.70 4.89 84.86 0.42 -2.29 16 10 N -0.93 -53.01 9.01 21.65 0.20 -52.81 16 11 Si 0.97 44.26 29.62 68.60 2.03 46.29 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 14 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 15 C 0.15 5.33 5.71 86.38 0.49 5.82 16 16 C -0.13 -4.94 4.74 30.59 0.14 -4.79 16 17 C -0.57 -14.12 5.98 71.98 0.43 -13.69 16 18 S 2.48 76.43 5.16 -56.49 -0.29 76.14 16 19 O -0.98 -36.84 17.13 -127.65 -2.19 -39.03 16 20 O -0.99 -38.01 17.12 -127.65 -2.19 -40.20 16 21 C -0.66 -15.62 5.66 22.27 0.13 -15.49 16 22 C -0.05 -0.96 9.47 22.27 0.21 -0.75 16 23 C -0.14 -2.07 10.05 22.27 0.22 -1.85 16 24 C -0.06 -0.76 10.05 22.27 0.22 -0.53 16 25 C -0.14 -1.98 10.05 22.27 0.22 -1.76 16 26 C -0.04 -0.89 9.47 22.27 0.21 -0.68 16 27 H 0.03 1.34 8.13 -2.38 -0.02 1.32 16 28 H 0.13 3.41 8.14 -2.38 -0.02 3.39 16 29 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 30 H 0.10 4.76 6.27 -2.39 -0.01 4.74 16 31 H 0.10 3.41 7.91 -2.39 -0.02 3.39 16 32 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 33 H 0.08 2.46 8.00 -2.39 -0.02 2.44 16 34 H 0.08 2.38 7.92 -2.39 -0.02 2.36 16 35 H 0.05 2.27 6.39 -2.38 -0.02 2.25 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.17 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.17 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.14 2.82 7.57 -2.91 -0.02 2.79 16 40 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.14 2.69 7.57 -2.91 -0.02 2.66 16 Total: -1.00 -83.34 374.21 2.46 -80.88 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.01 Total: 19.11 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 5.61 Total: -14.27 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.28 Total: -81.28 kcal Atomic # 8 Polarization: -122.25 SS G_CDS: -4.62 Total: -126.87 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 76.43 SS G_CDS: -0.29 Total: 76.14 kcal Total: -83.34 2.46 -80.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080873054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.439 kcal (2) G-P(sol) polarization free energy of solvation -83.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds