Wall clock time and date at job start Sat Apr 11 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42107 * 110.54111 * 2 1 4 4 O 1.42102 * 110.54223 * 136.75010 * 2 1 3 5 5 C 1.76200 * 104.45035 * 248.37826 * 2 1 3 6 6 C 1.38265 * 119.93826 * 269.72794 * 5 2 1 7 7 C 1.38150 * 120.05274 * 179.72608 * 6 5 2 8 8 C 1.38737 * 119.93984 * 0.56466 * 7 6 5 9 9 O 1.35898 * 120.05362 * 179.68459 * 8 7 6 10 10 C 1.42902 * 117.00054 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47244 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47358 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47358 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47478 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99366 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00299 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00417 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99054 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00496 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99810 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99930 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47325 * 59.99721 * 21 19 17 23 23 H 1.48505 * 109.46623 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46865 * 299.99346 * 21 19 17 25 25 C 1.38725 * 119.88903 * 359.70500 * 8 7 6 26 26 C 1.38137 * 119.94698 * 0.02562 * 25 8 7 27 27 H 1.09002 * 109.47124 * 171.62372 * 1 2 3 28 28 H 1.09001 * 109.46975 * 51.62493 * 1 2 3 29 29 H 1.09004 * 109.47147 * 291.62456 * 1 2 3 30 30 H 1.07992 * 119.97777 * 359.97438 * 6 5 2 31 31 H 1.07995 * 120.03154 * 180.25119 * 7 6 5 32 32 H 1.09000 * 109.47406 * 299.99777 * 10 9 8 33 33 H 1.08996 * 109.47318 * 59.99924 * 10 9 8 34 34 H 1.09007 * 109.47385 * 299.99764 * 11 10 9 35 35 H 1.09004 * 109.47441 * 59.99893 * 11 10 9 36 36 H 1.09010 * 109.46504 * 299.99502 * 12 11 10 37 37 H 1.08996 * 109.47566 * 59.99537 * 12 11 10 38 38 H 1.08997 * 109.47082 * 299.99864 * 13 12 11 39 39 H 1.09004 * 109.47441 * 59.99519 * 13 12 11 40 40 H 0.97003 * 119.99875 * 0.02562 * 16 14 13 41 41 H 0.97003 * 119.99870 * 180.02562 * 20 19 17 42 42 H 1.08007 * 120.02267 * 179.97438 * 25 8 7 43 43 H 1.08003 * 119.97413 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.4314 -1.9883 -1.7646 7 6 2.7706 -2.4843 -3.0085 8 6 2.9444 -1.6159 -4.0764 9 8 3.2844 -2.1008 -5.2996 10 6 3.4462 -3.5160 -5.4144 11 6 3.8263 -3.8707 -6.8533 12 6 3.9989 -5.3860 -6.9765 13 6 4.3797 -5.7407 -8.4152 14 6 4.5503 -7.2332 -8.5364 15 8 4.3842 -7.9431 -7.5671 16 7 4.8875 -7.7789 -9.7216 17 6 5.0422 -9.1366 -9.8320 18 1 4.8934 -9.7689 -8.9691 19 6 5.3903 -9.6992 -11.0538 20 7 5.5708 -8.9299 -12.1038 21 14 5.6004 -11.5493 -11.2042 22 1 4.3253 -12.2227 -10.8494 23 1 5.9696 -11.8935 -12.6008 24 1 6.6727 -12.0022 -10.2822 25 6 2.7710 -0.2517 -3.8934 26 6 2.4264 0.2387 -2.6489 27 1 -0.3633 -1.0167 -0.1497 28 1 -0.3633 0.6380 -0.8057 29 1 -0.3634 0.3787 0.9554 30 1 2.3011 -2.6633 -0.9318 31 1 2.9054 -3.5467 -3.1484 32 1 4.2344 -3.8476 -4.7386 33 1 2.5111 -4.0110 -5.1527 34 1 3.0384 -3.5391 -7.5297 35 1 4.7617 -3.3757 -7.1147 36 1 4.7867 -5.7180 -6.3002 37 1 3.0635 -5.8807 -6.7153 38 1 3.5923 -5.4086 -9.0918 39 1 5.3154 -5.2461 -8.6760 40 1 5.0207 -7.2110 -10.4967 41 1 5.8135 -9.3227 -12.9569 42 1 2.9062 0.4263 -4.7232 43 1 2.2908 1.3007 -2.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126715224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:13 Heat of formation + Delta-G solvation = -134.923526 kcal Electronic energy + Delta-G solvation = -25389.956467 eV Core-core repulsion = 21334.511505 eV Total energy + Delta-G solvation = -4055.444962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -40.61290 -38.40043 -37.98082 -37.49542 -36.32278 -34.89746 -33.84845 -31.65638 -31.29833 -30.92140 -29.98288 -29.29964 -25.67155 -24.22095 -23.42439 -22.51884 -21.10036 -19.46176 -19.15433 -18.72055 -17.90004 -17.72177 -16.72051 -16.69345 -16.56351 -15.86871 -15.72637 -15.13576 -15.10812 -14.57548 -14.33896 -14.07853 -13.95834 -13.84524 -13.73987 -13.68384 -13.45362 -12.88869 -12.78558 -12.47687 -12.40085 -12.22859 -11.95308 -11.76461 -11.55667 -11.42038 -11.32698 -11.15411 -11.11596 -10.98543 -10.94929 -10.46838 -10.44340 -10.23770 -9.57120 -9.54271 -8.97627 -8.43763 -8.00849 -6.45137 -3.86344 -0.36044 0.49855 0.83081 2.45374 2.72184 2.99346 3.17299 3.23356 3.27700 3.52760 3.68200 3.87999 4.14462 4.22018 4.27113 4.33633 4.46112 4.67392 4.70338 4.73832 4.85106 4.98526 5.07435 5.10244 5.12181 5.20212 5.39480 5.41490 5.47015 5.54411 5.61360 5.65389 5.79146 5.85355 5.90535 5.99234 6.20932 6.42232 6.42417 6.54625 6.92681 7.51473 8.02011 8.56814 9.13726 9.51088 10.02105 10.72333 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.036705 B = 0.001389 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.647512 B =20146.580258 C =20673.641521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.506 3.494 3 O -0.941 6.941 4 O -0.940 6.940 5 C -0.705 4.705 6 C 0.018 3.982 7 C -0.231 4.231 8 C 0.191 3.809 9 O -0.308 6.308 10 C 0.054 3.946 11 C -0.119 4.119 12 C -0.094 4.094 13 C -0.129 4.129 14 C 0.437 3.563 15 O -0.600 6.600 16 N -0.562 5.562 17 C -0.304 4.304 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.175 4.175 26 C 0.013 3.987 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.393 0.607 41 H 0.272 0.728 42 H 0.141 0.859 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 21.374 18.673 30.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.686 3.314 3 O -0.938 6.938 4 O -0.937 6.937 5 C -0.793 4.793 6 C -0.001 4.001 7 C -0.250 4.250 8 C 0.143 3.857 9 O -0.220 6.220 10 C -0.020 4.020 11 C -0.156 4.156 12 C -0.132 4.132 13 C -0.170 4.170 14 C 0.224 3.776 15 O -0.486 6.486 16 N -0.197 5.197 17 C -0.433 4.433 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.195 4.195 26 C -0.006 4.006 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.159 0.841 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.163 21.178 19.544 30.557 hybrid contribution -0.242 -1.124 -1.404 1.815 sum -10.405 20.053 18.139 28.973 Atomic orbital electron populations 1.30243 1.25972 1.12104 1.11765 1.04926 0.77691 0.74538 0.74264 1.93581 1.77338 1.36670 1.86222 1.93587 1.77312 1.61672 1.61174 1.30304 1.23822 1.02921 1.22239 1.20740 0.89348 0.93144 0.96866 1.21485 1.09390 1.00712 0.93450 1.19389 0.88679 0.93294 0.84316 1.86123 1.82068 1.26043 1.27752 1.23102 1.01640 0.77314 0.99956 1.21637 1.02968 0.97559 0.93471 1.21140 1.03125 0.91956 0.97017 1.21444 1.02451 0.95641 0.97432 1.19956 0.84217 0.89243 0.84201 1.90505 1.57010 1.63181 1.37895 1.41917 1.60084 1.08227 1.09481 1.19681 1.44220 0.82605 0.96832 0.87992 1.25274 0.97132 1.00526 0.94938 1.69606 1.47558 1.36054 1.00951 0.85911 0.78985 0.82125 0.77148 1.19902 1.20928 1.19885 1.20585 1.07420 0.92726 0.98747 1.20724 0.90125 0.99393 0.90341 0.84977 0.84986 0.85118 0.83815 0.84129 0.91262 0.91290 0.90734 0.90702 0.91089 0.91108 0.90403 0.90389 0.77355 0.91770 0.84115 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.50 10.80 101.05 1.09 -0.41 16 2 S 2.51 15.94 5.80 -107.50 -0.62 15.31 16 3 O -0.94 -8.88 17.12 -57.54 -0.99 -9.87 16 4 O -0.94 -9.18 17.11 -57.54 -0.98 -10.16 16 5 C -0.71 -5.34 5.66 -39.56 -0.22 -5.57 16 6 C 0.02 0.15 9.46 -39.60 -0.37 -0.23 16 7 C -0.23 -2.06 9.04 -39.43 -0.36 -2.41 16 8 C 0.19 1.87 6.69 -39.22 -0.26 1.61 16 9 O -0.31 -3.26 10.14 -19.42 -0.20 -3.46 16 10 C 0.05 0.53 4.74 37.16 0.18 0.71 16 11 C -0.12 -1.27 5.58 -26.73 -0.15 -1.42 16 12 C -0.09 -1.32 4.50 -26.73 -0.12 -1.44 16 13 C -0.13 -2.11 5.70 -27.88 -0.16 -2.27 16 14 C 0.44 10.09 7.78 -10.99 -0.09 10.01 16 15 O -0.60 -15.92 15.56 5.55 0.09 -15.84 16 16 N -0.56 -14.13 5.29 -10.97 -0.06 -14.19 16 17 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 18 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 21 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.18 -1.50 9.99 -39.44 -0.39 -1.89 16 26 C 0.01 0.10 9.46 -39.61 -0.37 -0.28 16 27 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 28 H 0.13 0.12 8.14 -51.92 -0.42 -0.30 16 29 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 30 H 0.14 0.91 7.56 -52.49 -0.40 0.51 16 31 H 0.14 1.07 6.30 -52.49 -0.33 0.74 16 32 H 0.07 0.63 7.66 -51.93 -0.40 0.24 16 33 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.06 8.10 -51.92 -0.42 0.64 16 37 H 0.07 1.05 8.10 -51.93 -0.42 0.62 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 43 H 0.15 0.79 7.57 -52.48 -0.40 0.39 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -36.77 380.89 -8.77 -45.54 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.98 Total: 6.33 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.47 Total: -11.66 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.67 Total: -37.80 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -2.08 Total: -39.33 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 15.94 SS G_CDS: -0.62 Total: 15.31 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.77 -8.77 -45.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126715224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.382 kcal (2) G-P(sol) polarization free energy of solvation -36.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds