Wall clock time and date at job start Sat Apr 11 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42107 * 110.54111 * 2 1 4 4 O 1.42102 * 110.54223 * 136.75010 * 2 1 3 5 5 C 1.76200 * 104.45035 * 248.37826 * 2 1 3 6 6 C 1.38265 * 119.93826 * 269.72794 * 5 2 1 7 7 C 1.38150 * 120.05274 * 179.72608 * 6 5 2 8 8 C 1.38737 * 119.93984 * 0.56466 * 7 6 5 9 9 O 1.35898 * 120.05362 * 179.68459 * 8 7 6 10 10 C 1.42902 * 117.00054 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47244 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47358 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47358 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47478 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99366 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00299 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00417 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99054 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00496 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99810 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99930 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47325 * 59.99721 * 21 19 17 23 23 H 1.48505 * 109.46623 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46865 * 299.99346 * 21 19 17 25 25 C 1.38725 * 119.88903 * 359.70500 * 8 7 6 26 26 C 1.38137 * 119.94698 * 0.02562 * 25 8 7 27 27 H 1.09002 * 109.47124 * 171.62372 * 1 2 3 28 28 H 1.09001 * 109.46975 * 51.62493 * 1 2 3 29 29 H 1.09004 * 109.47147 * 291.62456 * 1 2 3 30 30 H 1.07992 * 119.97777 * 359.97438 * 6 5 2 31 31 H 1.07995 * 120.03154 * 180.25119 * 7 6 5 32 32 H 1.09000 * 109.47406 * 299.99777 * 10 9 8 33 33 H 1.08996 * 109.47318 * 59.99924 * 10 9 8 34 34 H 1.09007 * 109.47385 * 299.99764 * 11 10 9 35 35 H 1.09004 * 109.47441 * 59.99893 * 11 10 9 36 36 H 1.09010 * 109.46504 * 299.99502 * 12 11 10 37 37 H 1.08996 * 109.47566 * 59.99537 * 12 11 10 38 38 H 1.08997 * 109.47082 * 299.99864 * 13 12 11 39 39 H 1.09004 * 109.47441 * 59.99519 * 13 12 11 40 40 H 0.97003 * 119.99875 * 0.02562 * 16 14 13 41 41 H 0.97003 * 119.99870 * 180.02562 * 20 19 17 42 42 H 1.08007 * 120.02267 * 179.97438 * 25 8 7 43 43 H 1.08003 * 119.97413 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.4314 -1.9883 -1.7646 7 6 2.7706 -2.4843 -3.0085 8 6 2.9444 -1.6159 -4.0764 9 8 3.2844 -2.1008 -5.2996 10 6 3.4462 -3.5160 -5.4144 11 6 3.8263 -3.8707 -6.8533 12 6 3.9989 -5.3860 -6.9765 13 6 4.3797 -5.7407 -8.4152 14 6 4.5503 -7.2332 -8.5364 15 8 4.3842 -7.9431 -7.5671 16 7 4.8875 -7.7789 -9.7216 17 6 5.0422 -9.1366 -9.8320 18 1 4.8934 -9.7689 -8.9691 19 6 5.3903 -9.6992 -11.0538 20 7 5.5708 -8.9299 -12.1038 21 14 5.6004 -11.5493 -11.2042 22 1 4.3253 -12.2227 -10.8494 23 1 5.9696 -11.8935 -12.6008 24 1 6.6727 -12.0022 -10.2822 25 6 2.7710 -0.2517 -3.8934 26 6 2.4264 0.2387 -2.6489 27 1 -0.3633 -1.0167 -0.1497 28 1 -0.3633 0.6380 -0.8057 29 1 -0.3634 0.3787 0.9554 30 1 2.3011 -2.6633 -0.9318 31 1 2.9054 -3.5467 -3.1484 32 1 4.2344 -3.8476 -4.7386 33 1 2.5111 -4.0110 -5.1527 34 1 3.0384 -3.5391 -7.5297 35 1 4.7617 -3.3757 -7.1147 36 1 4.7867 -5.7180 -6.3002 37 1 3.0635 -5.8807 -6.7153 38 1 3.5923 -5.4086 -9.0918 39 1 5.3154 -5.2461 -8.6760 40 1 5.0207 -7.2110 -10.4967 41 1 5.8135 -9.3227 -12.9569 42 1 2.9062 0.4263 -4.7232 43 1 2.2908 1.3007 -2.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126715224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:09 Heat of formation + Delta-G solvation = -161.751106 kcal Electronic energy + Delta-G solvation = -25391.119798 eV Core-core repulsion = 21334.511505 eV Total energy + Delta-G solvation = -4056.608293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 6.67 seconds Orbital eigenvalues (eV) -41.28722 -40.18294 -38.72051 -38.10568 -36.93656 -36.29267 -35.56726 -33.29435 -32.28844 -31.67976 -30.48673 -30.10211 -27.28544 -25.48296 -24.08419 -23.38672 -22.07118 -20.90870 -20.00454 -19.87199 -19.37792 -18.36361 -17.69290 -17.48277 -17.30291 -17.08743 -16.55719 -16.34834 -16.33906 -15.83678 -15.72140 -14.98245 -14.93833 -14.67636 -14.50600 -14.22473 -13.99999 -13.90117 -13.77218 -13.61088 -13.18819 -13.11151 -13.07770 -12.99752 -12.84481 -12.65755 -12.44665 -12.26160 -12.11562 -12.10491 -11.94647 -11.84112 -11.64565 -11.52624 -11.49175 -10.36240 -10.18491 -10.03346 -9.63684 -8.48177 -5.97497 -0.80894 -0.13512 0.21099 1.38819 1.40869 1.51866 1.92053 2.02900 2.05097 2.29736 2.38493 3.07293 3.19622 3.21891 3.25720 3.63705 3.76993 3.88578 3.90339 4.11043 4.14513 4.16071 4.20443 4.28791 4.29851 4.37947 4.47331 4.53615 4.70010 4.80593 4.83449 4.87747 4.92442 4.99587 5.00207 5.04907 5.17383 5.27928 5.39465 5.41543 5.60001 5.98572 6.22658 6.57458 7.10390 7.55242 8.10312 8.68811 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.036705 B = 0.001389 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.647512 B =20146.580258 C =20673.641521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.512 3.488 3 O -0.977 6.977 4 O -0.981 6.981 5 C -0.705 4.705 6 C 0.007 3.993 7 C -0.240 4.240 8 C 0.169 3.831 9 O -0.318 6.318 10 C 0.054 3.946 11 C -0.107 4.107 12 C -0.087 4.087 13 C -0.119 4.119 14 C 0.433 3.567 15 O -0.639 6.639 16 N -0.574 5.574 17 C -0.340 4.340 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.993 3.007 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.272 1.272 25 C -0.183 4.183 26 C 0.008 3.992 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.157 0.843 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.153 0.847 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 22.446 18.781 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.696 3.304 3 O -0.975 6.975 4 O -0.978 6.978 5 C -0.792 4.792 6 C -0.012 4.012 7 C -0.260 4.260 8 C 0.122 3.878 9 O -0.231 6.231 10 C -0.020 4.020 11 C -0.144 4.144 12 C -0.126 4.126 13 C -0.159 4.159 14 C 0.221 3.779 15 O -0.527 6.527 16 N -0.210 5.210 17 C -0.470 4.470 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.202 4.202 26 C -0.010 4.010 27 H 0.169 0.831 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.174 0.826 31 H 0.165 0.835 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.170 0.830 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.417 22.274 19.635 31.812 hybrid contribution 0.077 -1.390 -1.358 1.945 sum -11.341 20.884 18.277 29.980 Atomic orbital electron populations 1.30050 1.19760 1.14189 1.13993 1.04631 0.79809 0.72955 0.73034 1.93532 1.79678 1.37886 1.86362 1.93534 1.79741 1.62441 1.62130 1.30521 1.23177 1.02774 1.22713 1.20983 0.89391 0.93802 0.97028 1.21652 1.09497 1.01138 0.93673 1.19610 0.89958 0.93990 0.84283 1.86072 1.82612 1.26065 1.28359 1.23042 1.02180 0.77433 0.99342 1.21449 1.03746 0.94787 0.94447 1.21038 1.02029 0.94346 0.95140 1.21463 1.04550 0.90331 0.99575 1.21167 0.81872 0.91991 0.82824 1.90474 1.58109 1.65106 1.39029 1.42019 1.60966 1.07590 1.10413 1.19673 1.46502 0.83965 0.96830 0.90334 1.26052 0.96155 1.04801 0.94202 1.69666 1.47380 1.37655 1.01279 0.84985 0.78833 0.76837 0.77658 1.19680 1.19422 1.19740 1.20836 1.07236 0.92562 0.99611 1.21026 0.89592 1.00471 0.89955 0.83081 0.82734 0.83011 0.82560 0.83485 0.91052 0.90548 0.89740 0.90017 0.92412 0.92173 0.87974 0.88127 0.76878 0.91250 0.82975 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.71 10.80 113.37 1.22 0.51 16 2 S 2.51 29.19 5.80 -56.49 -0.33 28.86 16 3 O -0.98 -17.85 17.12 -127.65 -2.19 -20.04 16 4 O -0.98 -18.91 17.11 -127.65 -2.18 -21.10 16 5 C -0.71 -10.01 5.66 22.28 0.13 -9.88 16 6 C 0.01 0.10 9.46 22.26 0.21 0.31 16 7 C -0.24 -4.18 9.04 22.37 0.20 -3.97 16 8 C 0.17 3.21 6.69 22.51 0.15 3.36 16 9 O -0.32 -6.47 10.14 -92.41 -0.94 -7.41 16 10 C 0.05 1.01 4.74 71.98 0.34 1.35 16 11 C -0.11 -2.11 5.58 30.59 0.17 -1.94 16 12 C -0.09 -2.37 4.50 30.59 0.14 -2.23 16 13 C -0.12 -3.74 5.70 29.85 0.17 -3.57 16 14 C 0.43 20.15 7.78 87.66 0.68 20.83 16 15 O -0.64 -34.76 15.56 -3.05 -0.05 -34.81 16 16 N -0.57 -29.28 5.29 -307.00 -1.62 -30.90 16 17 C -0.34 -19.31 9.68 84.04 0.81 -18.49 16 18 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 19 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 20 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 21 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 C -0.18 -2.98 9.99 22.36 0.22 -2.75 16 26 C 0.01 0.11 9.46 22.25 0.21 0.32 16 27 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.15 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.16 1.90 7.56 -2.91 -0.02 1.88 16 31 H 0.15 2.21 6.30 -2.91 -0.02 2.19 16 32 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 33 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 34 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.71 8.10 -2.38 -0.02 1.69 16 37 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 38 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 41 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.17 1.54 7.57 -2.91 -0.02 1.52 16 Total: -1.00 -81.00 380.89 0.44 -80.56 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.30 Total: 25.57 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 5.13 Total: -16.32 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -1.34 Total: -79.98 kcal Atomic # 8 Polarization: -78.00 SS G_CDS: -5.35 Total: -83.35 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 29.19 SS G_CDS: -0.33 Total: 28.86 kcal Total: -81.00 0.44 -80.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126715224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.190 kcal (2) G-P(sol) polarization free energy of solvation -80.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.67 seconds