Wall clock time and date at job start Sat Apr 11 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 117.00180 * 2 1 4 4 O 1.21470 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.47717 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14876 * 0.02562 * 5 3 2 7 7 C 1.37929 * 119.84941 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.14825 * 0.27872 * 7 6 5 9 9 C 1.38345 * 120.30474 * 359.44560 * 8 7 6 10 10 C 1.50701 * 119.92999 * 180.25600 * 9 8 7 11 11 N 1.46493 * 109.46935 * 270.29730 * 10 9 8 12 12 S 1.65609 * 119.99991 * 164.99730 * 11 10 9 13 13 O 1.42095 * 104.27658 * 181.06952 * 12 11 10 14 14 O 1.42098 * 104.27625 * 308.92788 * 12 11 10 15 15 C 1.81400 * 104.44715 * 64.99557 * 12 11 10 16 16 C 1.52998 * 109.47152 * 179.97438 * 15 12 11 17 17 C 1.52997 * 109.47619 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47582 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99536 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00023 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99783 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99606 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47025 * 90.00150 * 22 20 18 24 24 H 1.48502 * 109.46757 * 209.99859 * 22 20 18 25 25 H 1.48498 * 109.47424 * 329.99688 * 22 20 18 26 26 C 1.37975 * 120.14878 * 0.55131 * 9 8 7 27 27 H 1.09000 * 109.47179 * 299.99893 * 1 2 3 28 28 H 1.08997 * 109.46840 * 60.00432 * 1 2 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.07600 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.92294 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.84887 * 179.71713 * 8 7 6 33 33 H 1.09001 * 109.46856 * 30.29199 * 10 9 8 34 34 H 1.09001 * 109.47100 * 150.29448 * 10 9 8 35 35 H 0.97007 * 120.00400 * 344.99546 * 11 10 9 36 36 H 1.08996 * 109.47483 * 300.00256 * 15 12 11 37 37 H 1.09005 * 109.46916 * 60.00584 * 15 12 11 38 38 H 1.09006 * 109.47088 * 300.00513 * 16 15 12 39 39 H 1.09001 * 109.46829 * 60.00025 * 16 15 12 40 40 H 1.08996 * 109.47160 * 300.00414 * 17 16 15 41 41 H 1.09001 * 109.47090 * 60.00074 * 17 16 15 42 42 H 0.97009 * 119.99181 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.07576 * 179.75004 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1878 0.0006 8 6 6.3044 1.4225 0.0064 9 6 5.5541 2.5848 0.0007 10 6 6.2435 3.9249 0.0013 11 7 6.4669 4.3584 1.3826 12 16 7.5208 5.5953 1.7021 13 8 7.4995 5.7169 3.1177 14 8 8.7099 5.2285 1.0160 15 6 6.7612 7.0487 0.9268 16 6 7.6509 8.2722 1.1555 17 6 7.0100 9.4983 0.5022 18 6 7.8867 10.7033 0.7270 19 1 8.8089 10.6044 1.2802 20 6 7.5113 11.9319 0.2264 21 7 6.3880 12.0523 -0.4467 22 14 8.5984 13.4254 0.5045 23 1 9.5701 13.5451 -0.6120 24 1 7.7560 14.6471 0.5608 25 1 9.3331 13.2712 1.7858 26 6 4.1759 2.5199 0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8159 -0.8558 0.0006 31 1 6.2712 -0.7157 0.0010 32 1 7.3829 1.4790 0.0110 33 1 7.2011 3.8410 -0.5125 34 1 5.6183 4.6553 -0.5123 35 1 5.9975 3.9211 2.1102 36 1 6.6513 6.8739 -0.1435 37 1 5.7805 7.2254 1.3687 38 1 7.7604 8.4469 2.2259 39 1 8.6318 8.0958 0.7140 40 1 6.9002 9.3239 -0.5681 41 1 6.0293 9.6745 0.9441 42 1 6.1238 12.9169 -0.7986 43 1 3.5913 3.4279 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128768282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:23 Heat of formation + Delta-G solvation = -147.099144 kcal Electronic energy + Delta-G solvation = -26136.518896 eV Core-core repulsion = 22080.545959 eV Total energy + Delta-G solvation = -4055.972936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99193 -39.50222 -36.94416 -36.82819 -35.84102 -35.58659 -34.67493 -32.18961 -31.92916 -31.43919 -28.23735 -27.81514 -26.06150 -24.53389 -23.73144 -22.27800 -21.12781 -20.67620 -19.26559 -18.35587 -17.60451 -17.36900 -16.76744 -16.65097 -16.48277 -16.34759 -15.82228 -15.55720 -15.11134 -14.78123 -14.48757 -14.16473 -14.03807 -13.93187 -13.62691 -13.33259 -12.89905 -12.60063 -12.58135 -12.28904 -12.25830 -11.96833 -11.94649 -11.84162 -11.78664 -11.45448 -11.24372 -11.24105 -10.93404 -10.92237 -10.85546 -10.44355 -9.95499 -9.79509 -9.51765 -9.41429 -9.32636 -9.08965 -8.40737 -6.05618 -4.08698 0.21087 0.40946 0.84186 2.09691 2.22254 2.82974 3.30621 3.33929 3.36784 3.40829 3.90691 4.12819 4.22060 4.36024 4.41331 4.42579 4.62203 4.67850 4.76576 4.77933 4.84572 4.96996 5.04753 5.15693 5.17234 5.20771 5.30885 5.36880 5.48153 5.60073 5.77562 5.79901 5.88611 5.93648 6.05171 6.26157 6.33406 6.44306 6.82063 6.87377 7.30373 7.57004 7.66829 7.92392 8.32783 8.97598 9.56026 11.05563 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.002080 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.837586 B =13455.178549 C =14736.475308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.508 3.492 4 O -0.501 6.501 5 C -0.131 4.131 6 C -0.057 4.057 7 C -0.134 4.134 8 C -0.062 4.062 9 C -0.107 4.107 10 C 0.155 3.845 11 N -1.123 6.123 12 S 2.601 3.399 13 O -0.961 6.961 14 O -0.962 6.962 15 C -0.609 4.609 16 C -0.106 4.106 17 C 0.030 3.970 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.037 4.037 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.416 0.584 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 -29.287 -0.803 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.353 3.647 4 O -0.390 6.390 5 C -0.132 4.132 6 C -0.076 4.076 7 C -0.152 4.152 8 C -0.081 4.081 9 C -0.109 4.109 10 C 0.029 3.971 11 N -0.880 5.880 12 S 2.697 3.303 13 O -0.952 6.952 14 O -0.952 6.952 15 C -0.741 4.741 16 C -0.145 4.145 17 C -0.008 4.008 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.056 4.056 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.250 0.750 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.589 -28.880 -0.560 29.865 hybrid contribution -0.608 0.971 -0.028 1.146 sum -8.197 -27.909 -0.588 29.093 Atomic orbital electron populations 1.23314 0.75650 1.03884 1.02872 1.86524 1.23814 1.32602 1.84376 1.21211 0.89133 0.81539 0.72840 1.90872 1.66737 1.35962 1.45389 1.19057 0.88997 0.94993 1.10154 1.21517 0.94010 0.97914 0.94122 1.21202 0.94288 0.98188 1.01509 1.21512 1.00928 0.91715 0.93910 1.19773 0.92941 0.95319 1.02834 1.20227 1.01168 0.92649 0.83079 1.55821 1.65485 1.53234 1.13505 1.05306 0.74525 0.75662 0.74766 1.93584 1.86499 1.86323 1.28776 1.93564 1.44097 1.81327 1.76168 1.30547 1.12994 1.16971 1.13570 1.21502 0.97335 0.93529 1.02167 1.19064 0.96080 0.89824 0.95845 1.21253 1.07003 0.93238 1.34971 0.92361 1.25026 0.95230 0.99094 0.95080 1.69961 1.22232 1.24665 1.36536 0.86549 0.80371 0.82135 0.78714 1.20576 1.21185 1.19750 1.21263 0.93929 0.97135 0.93311 0.91652 0.91661 0.87851 0.84362 0.84725 0.84603 0.88751 0.90246 0.75018 0.85447 0.85184 0.91559 0.91533 0.96113 0.96100 0.92894 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.91 9.82 -40.51 -0.40 -3.31 16 3 C 0.51 5.10 7.90 34.60 0.27 5.37 16 4 O -0.50 -6.40 16.14 -19.24 -0.31 -6.71 16 5 C -0.13 -1.14 5.87 -104.99 -0.62 -1.76 16 6 C -0.06 -0.38 9.62 -39.17 -0.38 -0.76 16 7 C -0.13 -0.80 10.03 -39.64 -0.40 -1.19 16 8 C -0.06 -0.43 9.69 -39.49 -0.38 -0.81 16 9 C -0.11 -0.86 5.27 -104.68 -0.55 -1.41 16 10 C 0.15 1.32 6.25 -5.20 -0.03 1.29 16 11 N -1.12 -11.17 5.88 -11.66 -0.07 -11.24 16 12 S 2.60 35.96 5.46 -107.50 -0.59 35.37 16 13 O -0.96 -16.40 18.08 -57.54 -1.04 -17.44 16 14 O -0.96 -15.82 17.50 -57.54 -1.01 -16.83 16 15 C -0.61 -8.98 6.07 37.16 0.23 -8.75 16 16 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 17 C 0.03 0.76 4.97 -27.89 -0.14 0.62 16 18 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 22 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.04 -0.33 9.24 -39.17 -0.36 -0.69 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.14 0.70 7.61 -52.49 -0.40 0.30 16 31 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.09 0.78 7.64 -51.93 -0.40 0.38 16 34 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.42 3.62 8.61 -34.48 -0.30 3.33 16 36 H 0.13 1.63 8.14 -51.93 -0.42 1.20 16 37 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.14 1.27 7.65 -52.49 -0.40 0.87 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -37.36 387.25 -9.81 -47.16 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.11 Total: -0.88 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -1.84 Total: -22.67 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.67 Total: -37.12 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -2.76 Total: -44.30 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 35.96 SS G_CDS: -0.59 Total: 35.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.36 -9.81 -47.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128768282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.938 kcal (2) G-P(sol) polarization free energy of solvation -37.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds