Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 117.00180 * 2 1 4 4 O 1.21470 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.47717 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14876 * 0.02562 * 5 3 2 7 7 C 1.37929 * 119.84941 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.14825 * 0.27872 * 7 6 5 9 9 C 1.38345 * 120.30474 * 359.44560 * 8 7 6 10 10 C 1.50701 * 119.92999 * 180.25600 * 9 8 7 11 11 S 1.81397 * 109.47184 * 270.29622 * 10 9 8 12 12 O 1.42104 * 110.54158 * 291.62315 * 11 10 9 13 13 O 1.42099 * 110.54388 * 68.37236 * 11 10 9 14 14 N 1.65597 * 104.45217 * 179.97438 * 11 10 9 15 15 C 1.46502 * 119.99884 * 64.99801 * 14 11 10 16 16 C 1.52993 * 109.47305 * 165.00394 * 15 14 11 17 17 C 1.53003 * 109.47221 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46832 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00263 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99656 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.46826 * 90.00017 * 22 20 18 24 24 H 1.48492 * 109.47593 * 210.00299 * 22 20 18 25 25 H 1.48506 * 109.47232 * 330.00663 * 22 20 18 26 26 C 1.37975 * 120.14878 * 0.55131 * 9 8 7 27 27 H 1.09000 * 109.47179 * 299.99893 * 1 2 3 28 28 H 1.08997 * 109.46840 * 60.00432 * 1 2 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.07600 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.92294 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.84887 * 179.71713 * 8 7 6 33 33 H 1.09001 * 109.46856 * 30.29199 * 10 9 8 34 34 H 1.09001 * 109.47100 * 150.29448 * 10 9 8 35 35 H 0.96993 * 120.00405 * 245.00310 * 14 11 10 36 36 H 1.09001 * 109.46923 * 285.00247 * 15 14 11 37 37 H 1.08999 * 109.47290 * 45.00112 * 15 14 11 38 38 H 1.09001 * 109.47010 * 299.99800 * 16 15 14 39 39 H 1.08994 * 109.47520 * 59.99932 * 16 15 14 40 40 H 1.09001 * 109.46692 * 299.99660 * 17 16 15 41 41 H 1.08998 * 109.46902 * 59.99808 * 17 16 15 42 42 H 0.96997 * 119.99781 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.07576 * 179.75004 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1878 0.0006 8 6 6.3044 1.4225 0.0064 9 6 5.5541 2.5848 0.0007 10 6 6.2435 3.9249 0.0013 11 16 6.5201 4.4618 1.7117 12 8 5.2846 4.7642 2.3454 13 8 7.4845 3.6323 2.3450 14 7 7.2754 5.9284 1.5674 15 6 6.5658 7.0621 0.9695 16 6 7.3154 8.3576 1.2864 17 6 6.5740 9.5416 0.6625 18 6 7.3121 10.8177 0.9753 19 1 8.2190 10.7873 1.5609 20 6 6.8295 12.0240 0.5138 21 7 5.7248 12.0611 -0.1989 22 14 7.7440 13.6060 0.9021 23 1 8.7385 13.8778 -0.1668 24 1 6.7775 14.7309 0.9767 25 1 8.4431 13.4667 2.2048 26 6 4.1759 2.5199 0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8159 -0.8558 0.0006 31 1 6.2712 -0.7157 0.0010 32 1 7.3829 1.4790 0.0110 33 1 7.2011 3.8410 -0.5125 34 1 5.6183 4.6553 -0.5123 35 1 8.1876 6.0369 1.8787 36 1 6.5124 6.9283 -0.1110 37 1 5.5572 7.1164 1.3791 38 1 7.3688 8.4914 2.3669 39 1 8.3240 8.3034 0.8768 40 1 6.5202 9.4080 -0.4180 41 1 5.5655 9.5957 1.0726 42 1 5.3852 12.9098 -0.5232 43 1 3.5913 3.4279 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172455513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = -145.951114 kcal Electronic energy + Delta-G solvation = -26348.253524 eV Core-core repulsion = 22292.330370 eV Total energy + Delta-G solvation = -4055.923154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95486 -39.43312 -37.15793 -36.77297 -36.09661 -35.89114 -33.69696 -33.26028 -31.79504 -30.88848 -28.47400 -27.62489 -26.41146 -24.55572 -23.03464 -22.50006 -21.19912 -20.58395 -19.32236 -18.17603 -17.55727 -17.52979 -16.73747 -16.68627 -16.51312 -16.32521 -16.04493 -15.50419 -14.99674 -14.62215 -14.56318 -14.39302 -14.02530 -13.91377 -13.71529 -13.04920 -13.04380 -12.60174 -12.53467 -12.35855 -12.23393 -12.20309 -12.06953 -11.95379 -11.72682 -11.57313 -11.30044 -11.18240 -10.94406 -10.89818 -10.77854 -10.55790 -9.96389 -9.54214 -9.48536 -9.43857 -9.17877 -9.04984 -8.38596 -6.03607 -4.06313 -0.01574 0.28338 0.87802 2.13354 2.25030 2.71696 3.26274 3.30167 3.36887 3.40151 3.62260 3.97254 4.03162 4.24413 4.38646 4.43507 4.60598 4.70564 4.72328 4.77479 4.82658 4.95957 5.04219 5.15398 5.28059 5.32461 5.33194 5.45714 5.60248 5.75209 5.78491 5.86416 5.88382 5.98954 6.04972 6.29066 6.53802 6.73052 6.93074 7.11683 7.35288 7.60826 7.73400 7.95062 8.36768 9.00261 9.58062 11.07663 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.002141 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.990198 B =13074.248431 C =14331.365185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.508 3.492 4 O -0.496 6.496 5 C -0.125 4.125 6 C -0.056 4.056 7 C -0.129 4.129 8 C -0.069 4.069 9 C -0.099 4.099 10 C -0.592 4.592 11 S 2.608 3.392 12 O -0.945 6.945 13 O -0.959 6.959 14 N -1.115 6.115 15 C 0.107 3.893 16 C -0.116 4.116 17 C 0.020 3.980 18 C -0.522 4.522 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.040 4.040 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.417 0.583 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -28.954 -2.561 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.352 3.648 4 O -0.384 6.384 5 C -0.126 4.126 6 C -0.074 4.074 7 C -0.147 4.147 8 C -0.088 4.088 9 C -0.101 4.101 10 C -0.718 4.718 11 S 2.699 3.301 12 O -0.935 6.935 13 O -0.950 6.950 14 N -0.876 5.876 15 C -0.018 4.018 16 C -0.155 4.155 17 C -0.017 4.017 18 C -0.560 4.560 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.059 4.059 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.763 -28.964 -1.915 29.270 hybrid contribution 0.679 1.257 -0.574 1.540 sum -3.085 -27.707 -2.489 27.989 Atomic orbital electron populations 1.23324 0.75582 1.03884 1.02954 1.86515 1.23867 1.32471 1.84425 1.21121 0.88982 0.81638 0.73045 1.90887 1.66620 1.35912 1.44981 1.19038 0.89307 0.94728 1.09531 1.21579 0.93994 0.98048 0.93806 1.21198 0.94344 0.98052 1.01102 1.21520 1.00998 0.91719 0.94582 1.18894 0.93049 0.92958 1.05207 1.29739 1.10528 1.03334 1.28202 1.05138 0.74653 0.73497 0.76774 1.93627 1.45997 1.82908 1.70993 1.93582 1.60955 1.67952 1.72463 1.55590 1.27944 1.26061 1.77968 1.21660 0.96810 0.86524 0.96779 1.21843 0.99180 0.93068 1.01395 1.19090 0.95767 0.90874 0.96017 1.21209 1.09731 0.91593 1.33500 0.92595 1.25031 0.95049 0.99251 0.95174 1.69958 1.21141 1.26072 1.36182 0.86577 0.79513 0.83056 0.78735 1.20695 1.21212 1.19874 1.21331 0.93657 0.97849 0.93097 0.91557 0.91648 0.87825 0.83910 0.84228 0.84217 0.83483 0.83424 0.74819 0.92103 0.90353 0.92323 0.92548 0.96300 0.96121 0.92927 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.22 9.82 -40.51 -0.40 -3.62 16 3 C 0.51 5.80 7.90 34.60 0.27 6.07 16 4 O -0.50 -7.10 16.14 -19.24 -0.31 -7.41 16 5 C -0.12 -1.30 5.87 -104.99 -0.62 -1.92 16 6 C -0.06 -0.43 9.62 -39.17 -0.38 -0.81 16 7 C -0.13 -0.89 10.03 -39.64 -0.40 -1.29 16 8 C -0.07 -0.57 9.69 -39.49 -0.38 -0.95 16 9 C -0.10 -0.99 5.13 -104.68 -0.54 -1.53 16 10 C -0.59 -5.36 6.19 36.01 0.22 -5.13 16 11 S 2.61 33.06 5.44 -107.50 -0.58 32.48 16 12 O -0.95 -15.65 17.50 -57.54 -1.01 -16.66 16 13 O -0.96 -13.88 18.08 -57.54 -1.04 -14.92 16 14 N -1.11 -14.19 5.89 -10.61 -0.06 -14.25 16 15 C 0.11 1.63 6.13 -4.04 -0.02 1.61 16 16 C -0.12 -2.19 5.29 -26.73 -0.14 -2.33 16 17 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 18 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 22 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.04 -0.45 9.24 -39.17 -0.36 -0.81 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.14 0.79 7.61 -52.49 -0.40 0.39 16 31 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.15 0.91 8.09 -51.92 -0.42 0.49 16 34 H 0.15 1.16 8.08 -51.92 -0.42 0.74 16 35 H 0.42 4.72 8.62 -34.47 -0.30 4.42 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.26 7.70 -51.93 -0.40 0.86 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.15 1.71 7.65 -52.49 -0.40 1.31 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -36.87 387.25 -9.78 -46.66 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.11 Total: -0.11 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.83 Total: -18.65 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.67 Total: -39.98 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -2.76 Total: -42.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 33.06 SS G_CDS: -0.58 Total: 32.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.87 -9.78 -46.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172455513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.296 kcal (2) G-P(sol) polarization free energy of solvation -36.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds