Wall clock time and date at job start Sat Apr 11 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 117.00180 * 2 1 4 4 O 1.21470 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.47717 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14876 * 0.02562 * 5 3 2 7 7 C 1.37929 * 119.84941 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.14825 * 0.27872 * 7 6 5 9 9 C 1.38345 * 120.30474 * 359.44560 * 8 7 6 10 10 C 1.50701 * 119.92999 * 180.25600 * 9 8 7 11 11 S 1.81397 * 109.47184 * 270.29622 * 10 9 8 12 12 O 1.42104 * 110.54158 * 291.62315 * 11 10 9 13 13 O 1.42099 * 110.54388 * 68.37236 * 11 10 9 14 14 N 1.65597 * 104.45217 * 179.97438 * 11 10 9 15 15 C 1.46502 * 119.99884 * 64.99801 * 14 11 10 16 16 C 1.52993 * 109.47305 * 165.00394 * 15 14 11 17 17 C 1.53003 * 109.47221 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46832 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00263 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99656 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.46826 * 90.00017 * 22 20 18 24 24 H 1.48492 * 109.47593 * 210.00299 * 22 20 18 25 25 H 1.48506 * 109.47232 * 330.00663 * 22 20 18 26 26 C 1.37975 * 120.14878 * 0.55131 * 9 8 7 27 27 H 1.09000 * 109.47179 * 299.99893 * 1 2 3 28 28 H 1.08997 * 109.46840 * 60.00432 * 1 2 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.07600 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.92294 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.84887 * 179.71713 * 8 7 6 33 33 H 1.09001 * 109.46856 * 30.29199 * 10 9 8 34 34 H 1.09001 * 109.47100 * 150.29448 * 10 9 8 35 35 H 0.96993 * 120.00405 * 245.00310 * 14 11 10 36 36 H 1.09001 * 109.46923 * 285.00247 * 15 14 11 37 37 H 1.08999 * 109.47290 * 45.00112 * 15 14 11 38 38 H 1.09001 * 109.47010 * 299.99800 * 16 15 14 39 39 H 1.08994 * 109.47520 * 59.99932 * 16 15 14 40 40 H 1.09001 * 109.46692 * 299.99660 * 17 16 15 41 41 H 1.08998 * 109.46902 * 59.99808 * 17 16 15 42 42 H 0.96997 * 119.99781 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.07576 * 179.75004 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1878 0.0006 8 6 6.3044 1.4225 0.0064 9 6 5.5541 2.5848 0.0007 10 6 6.2435 3.9249 0.0013 11 16 6.5201 4.4618 1.7117 12 8 5.2846 4.7642 2.3454 13 8 7.4845 3.6323 2.3450 14 7 7.2754 5.9284 1.5674 15 6 6.5658 7.0621 0.9695 16 6 7.3154 8.3576 1.2864 17 6 6.5740 9.5416 0.6625 18 6 7.3121 10.8177 0.9753 19 1 8.2190 10.7873 1.5609 20 6 6.8295 12.0240 0.5138 21 7 5.7248 12.0611 -0.1989 22 14 7.7440 13.6060 0.9021 23 1 8.7385 13.8778 -0.1668 24 1 6.7775 14.7309 0.9767 25 1 8.4431 13.4667 2.2048 26 6 4.1759 2.5199 0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8159 -0.8558 0.0006 31 1 6.2712 -0.7157 0.0010 32 1 7.3829 1.4790 0.0110 33 1 7.2011 3.8410 -0.5125 34 1 5.6183 4.6553 -0.5123 35 1 8.1876 6.0369 1.8787 36 1 6.5124 6.9283 -0.1110 37 1 5.5572 7.1164 1.3791 38 1 7.3688 8.4914 2.3669 39 1 8.3240 8.3034 0.8768 40 1 6.5202 9.4080 -0.4180 41 1 5.5655 9.5957 1.0726 42 1 5.3852 12.9098 -0.5232 43 1 3.5913 3.4279 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172455513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:07 Heat of formation + Delta-G solvation = -171.920830 kcal Electronic energy + Delta-G solvation = -26349.379655 eV Core-core repulsion = 22292.330370 eV Total energy + Delta-G solvation = -4057.049285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 4.14 seconds Orbital eigenvalues (eV) -41.73878 -40.11928 -38.26985 -37.59840 -37.39097 -37.05646 -35.16214 -34.39545 -32.62999 -32.45818 -29.13440 -28.29323 -28.17164 -25.25547 -24.76748 -23.17758 -22.23382 -21.91337 -20.38116 -18.96814 -18.61497 -18.54694 -18.31040 -17.50722 -17.40730 -17.22770 -17.09454 -16.50901 -16.32341 -16.04082 -15.67746 -15.51860 -14.69197 -14.63175 -14.40990 -14.30932 -14.07276 -13.80345 -13.75993 -13.68373 -13.27079 -13.19348 -13.14392 -13.10392 -12.83677 -12.78373 -12.53201 -12.43052 -12.30142 -12.14323 -11.89510 -11.74596 -11.67876 -11.38645 -11.14294 -10.53572 -10.48181 -10.20987 -9.89089 -8.18614 -6.28799 -0.94625 -0.46608 0.20576 1.35175 1.41436 1.42679 1.53434 1.55013 1.70069 2.42374 2.56058 2.73085 3.14516 3.15204 3.23691 3.55634 3.70118 3.91647 4.02501 4.06835 4.12069 4.27581 4.27901 4.29733 4.34068 4.41737 4.52395 4.63525 4.70327 4.73113 4.84696 4.99857 5.09019 5.13236 5.20526 5.23835 5.25721 5.27337 5.55248 5.69426 5.76987 5.87869 6.09479 6.26668 6.54298 6.88577 7.40230 8.93021 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.002141 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.990198 B =13074.248431 C =14331.365185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.507 3.493 4 O -0.539 6.539 5 C -0.148 4.148 6 C -0.046 4.046 7 C -0.122 4.122 8 C -0.070 4.070 9 C -0.118 4.118 10 C -0.569 4.569 11 S 2.610 3.390 12 O -0.996 6.996 13 O -0.978 6.978 14 N -1.111 6.111 15 C 0.114 3.886 16 C -0.105 4.105 17 C 0.020 3.980 18 C -0.542 4.542 19 H 0.061 0.939 20 C -0.002 4.002 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.063 4.063 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.141 0.859 30 H 0.167 0.833 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.159 0.841 35 H 0.424 0.576 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.005 0.995 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -31.153 -3.265 31.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.353 3.647 4 O -0.430 6.430 5 C -0.149 4.149 6 C -0.065 4.065 7 C -0.139 4.139 8 C -0.089 4.089 9 C -0.120 4.120 10 C -0.699 4.699 11 S 2.707 3.293 12 O -0.986 6.986 13 O -0.968 6.968 14 N -0.871 5.871 15 C -0.012 4.012 16 C -0.144 4.144 17 C -0.018 4.018 18 C -0.580 4.580 19 H 0.080 0.920 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.083 4.083 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.185 0.815 31 H 0.196 0.804 32 H 0.184 0.816 33 H 0.204 0.796 34 H 0.177 0.823 35 H 0.260 0.740 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.023 0.977 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.590 -31.168 -2.561 31.313 hybrid contribution -0.038 1.783 -0.398 1.827 sum -1.628 -29.385 -2.958 29.579 Atomic orbital electron populations 1.23633 0.74124 1.06178 1.02577 1.86507 1.25307 1.31098 1.83774 1.21460 0.89591 0.81667 0.71946 1.90859 1.67579 1.37300 1.47259 1.19165 0.88952 0.95611 1.11156 1.21911 0.94546 0.97943 0.92055 1.21675 0.94094 0.99074 0.99066 1.21965 1.02367 0.91444 0.93081 1.19032 0.92606 0.93947 1.06400 1.29521 1.12876 1.03391 1.24091 1.04867 0.73254 0.72972 0.78204 1.93569 1.47747 1.83496 1.73747 1.93548 1.61166 1.67917 1.74204 1.55343 1.28011 1.25529 1.78260 1.21429 0.95659 0.85661 0.98426 1.21616 0.99606 0.92673 1.00544 1.19013 0.94811 0.92670 0.95333 1.21708 1.10073 0.92983 1.33225 0.92031 1.25968 0.95921 1.03066 0.95044 1.70089 1.22776 1.27017 1.37402 0.85474 0.78270 0.78455 0.78993 1.19610 1.21079 1.18927 1.21361 0.94545 0.97761 0.94636 0.92184 0.91906 0.84130 0.81518 0.80393 0.81565 0.79639 0.82287 0.73956 0.89463 0.91860 0.92897 0.90949 0.97677 0.98954 0.92833 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.14 9.82 -56.18 -0.55 -6.70 16 3 C 0.51 11.93 7.90 70.33 0.56 12.49 16 4 O -0.54 -16.50 16.14 19.93 0.32 -16.18 16 5 C -0.15 -3.05 5.87 -20.10 -0.12 -3.17 16 6 C -0.05 -0.61 9.62 22.54 0.22 -0.39 16 7 C -0.12 -1.22 10.03 22.23 0.22 -1.00 16 8 C -0.07 -0.91 9.69 22.33 0.22 -0.70 16 9 C -0.12 -2.17 5.13 -19.90 -0.10 -2.27 16 10 C -0.57 -9.16 6.19 71.24 0.44 -8.72 16 11 S 2.61 64.70 5.44 -56.49 -0.31 64.39 16 12 O -1.00 -34.24 17.50 -127.65 -2.23 -36.48 16 13 O -0.98 -27.18 18.08 -127.65 -2.31 -29.49 16 14 N -1.11 -27.22 5.89 -187.50 -1.10 -28.32 16 15 C 0.11 3.43 6.13 86.38 0.53 3.96 16 16 C -0.11 -3.96 5.29 30.59 0.16 -3.80 16 17 C 0.02 0.99 4.97 29.85 0.15 1.14 16 18 C -0.54 -30.14 9.11 25.60 0.23 -29.90 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 20 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 21 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 22 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 26 C -0.06 -1.44 9.24 22.54 0.21 -1.24 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.17 1.31 7.61 -2.91 -0.02 1.29 16 31 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.19 1.54 8.09 -2.39 -0.02 1.53 16 34 H 0.16 2.27 8.08 -2.39 -0.02 2.25 16 35 H 0.42 9.03 8.62 -96.75 -0.83 8.20 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.06 2.10 7.70 -2.39 -0.02 2.08 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 41 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.13 3.30 7.65 -2.91 -0.02 3.27 16 Total: -1.00 -83.14 387.25 0.69 -82.44 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.19 Total: 12.07 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 4.37 Total: -31.73 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -0.82 Total: -84.27 kcal Atomic # 8 Polarization: -84.07 SS G_CDS: -4.77 Total: -88.85 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 64.70 SS G_CDS: -0.31 Total: 64.39 kcal Total: -83.14 0.69 -82.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172455513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.478 kcal (2) G-P(sol) polarization free energy of solvation -83.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.14 seconds