Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00076 * 2 1 4 4 C 1.50701 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99890 * 270.01677 * 4 3 2 6 6 C 1.38212 * 119.99859 * 179.97438 * 5 4 3 7 7 C 1.38255 * 120.00284 * 0.02562 * 6 5 4 8 8 C 1.38217 * 119.99740 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99801 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46977 * 269.95092 * 9 8 7 11 11 O 1.21285 * 119.99654 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00030 * 180.02562 * 10 9 8 13 13 S 1.65604 * 119.99964 * 179.97438 * 12 10 9 14 14 O 1.42097 * 104.27569 * 181.06998 * 13 12 10 15 15 O 1.42098 * 104.27877 * 308.93290 * 13 12 10 16 16 C 1.81399 * 104.44701 * 65.00075 * 13 12 10 17 17 C 1.53000 * 109.47293 * 179.97438 * 16 13 12 18 18 C 1.50694 * 109.47462 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99999 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00253 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99532 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00017 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47348 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46731 * 120.00313 * 22 20 18 25 25 H 1.48504 * 109.46941 * 240.00004 * 22 20 18 26 26 C 1.38215 * 119.99815 * 89.99840 * 4 3 2 27 27 H 1.08997 * 109.47232 * 300.00065 * 1 2 3 28 28 H 1.09002 * 109.47070 * 60.00293 * 1 2 3 29 29 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47298 * 59.99415 * 3 2 1 31 31 H 1.09006 * 109.47065 * 299.99406 * 3 2 1 32 32 H 1.08002 * 120.00364 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.99961 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.00435 * 180.02562 * 7 6 5 35 35 H 1.08994 * 109.46953 * 29.94909 * 9 8 7 36 36 H 1.08996 * 109.46834 * 149.95334 * 9 8 7 37 37 H 0.96993 * 119.99915 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47621 * 299.99883 * 16 13 12 39 39 H 1.09009 * 109.47249 * 59.99746 * 16 13 12 40 40 H 1.08999 * 109.46873 * 300.00563 * 17 16 13 41 41 H 1.08996 * 109.46752 * 60.00033 * 17 16 13 42 42 H 0.97005 * 119.99794 * 179.97438 * 21 20 18 43 43 H 1.07995 * 120.00164 * 359.72517 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1317 1.1982 6 6 5.5789 1.0221 1.1988 7 6 6.2685 0.9676 0.0018 8 6 5.5802 1.0234 -1.1955 9 6 6.3320 0.9646 -2.5003 10 6 6.6943 2.3614 -2.9346 11 8 6.3740 3.3111 -2.2516 12 7 7.3743 2.5553 -4.0820 13 16 7.7718 4.0903 -4.5596 14 8 8.4450 3.9088 -5.7978 15 8 6.5470 4.8074 -4.4898 16 6 8.9253 4.6756 -3.2878 17 6 9.3714 6.1007 -3.6207 18 6 10.3302 6.5867 -2.5645 19 1 10.5952 5.9432 -1.7385 20 6 10.8699 7.8524 -2.6530 21 7 10.5475 8.6357 -3.6591 22 14 12.0588 8.4544 -1.3441 23 1 12.2561 7.3903 -0.3274 24 1 13.3625 8.7845 -1.9739 25 1 11.5035 9.6670 -0.6910 26 6 4.2019 1.1316 -1.1961 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8898 31 1 1.6887 1.8464 -0.8901 32 1 3.6624 1.1739 2.1334 33 1 6.1167 0.9789 2.1344 34 1 7.3451 0.8815 0.0022 35 1 7.2410 0.3775 -2.3697 36 1 5.7047 0.4990 -3.2603 37 1 7.6308 1.7958 -4.6280 38 1 8.4305 4.6669 -2.3166 39 1 9.7960 4.0203 -3.2577 40 1 9.8664 6.1090 -4.5918 41 1 8.5010 6.7561 -3.6510 42 1 10.9269 9.5263 -3.7212 43 1 3.6636 1.1696 -2.1316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189113367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = -140.007909 kcal Electronic energy + Delta-G solvation = -26804.609562 eV Core-core repulsion = 22748.944125 eV Total energy + Delta-G solvation = -4055.665437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.47525 -39.33419 -37.82153 -36.70024 -35.61693 -34.44265 -33.89478 -33.35528 -31.89921 -31.18232 -28.30351 -27.48812 -25.62773 -25.59617 -22.89628 -22.04413 -21.63567 -20.65361 -19.33903 -17.93117 -17.51487 -16.88685 -16.64236 -16.56059 -16.39362 -15.89139 -15.74887 -15.32171 -15.11413 -14.68043 -14.64302 -14.51596 -14.27788 -13.46142 -13.40489 -12.91797 -12.73004 -12.67014 -12.55040 -12.34714 -12.30004 -11.80321 -11.77641 -11.72607 -11.61606 -11.29883 -11.14020 -11.09557 -10.99863 -10.85201 -10.44206 -10.35777 -10.26692 -10.04573 -9.71335 -9.17499 -9.00549 -8.89062 -8.50298 -6.12363 -4.17589 0.49076 1.08365 1.21884 2.08917 2.74183 3.26135 3.31070 3.33206 3.36981 3.81611 4.04586 4.27870 4.35848 4.37439 4.51571 4.63424 4.67901 4.86005 4.87686 4.96304 4.96968 4.99928 5.04534 5.13008 5.19232 5.23066 5.27658 5.31054 5.45821 5.59424 5.72434 5.79235 5.86152 6.26144 6.33518 6.38568 6.45817 6.62590 6.76036 6.82198 7.28517 7.35115 7.47586 7.80992 8.16785 8.85574 9.46908 10.98795 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.002544 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.628083 B =11004.733354 C =12038.825565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.102 3.898 4 C -0.093 4.093 5 C -0.096 4.096 6 C -0.120 4.120 7 C -0.095 4.095 8 C -0.077 4.077 9 C -0.103 4.103 10 C 0.531 3.469 11 O -0.479 6.479 12 N -1.060 6.060 13 S 2.566 3.434 14 O -0.955 6.955 15 O -0.939 6.939 16 C -0.575 4.575 17 C 0.029 3.971 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.901 3.099 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.080 4.080 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.428 0.572 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.302 -21.690 6.492 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.026 3.974 4 C -0.093 4.093 5 C -0.114 4.114 6 C -0.138 4.138 7 C -0.113 4.113 8 C -0.077 4.077 9 C -0.144 4.144 10 C 0.317 3.683 11 O -0.349 6.349 12 N -0.822 5.822 13 S 2.666 3.334 14 O -0.946 6.946 15 O -0.929 6.929 16 C -0.710 4.710 17 C -0.010 4.010 18 C -0.557 4.557 19 H 0.081 0.919 20 C -0.146 4.146 21 N -0.528 5.528 22 Si 0.729 3.271 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.099 4.099 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.263 0.737 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.802 -20.583 6.129 26.083 hybrid contribution 0.930 0.133 0.836 1.258 sum -13.871 -20.450 6.965 25.673 Atomic orbital electron populations 1.22761 0.80994 1.02799 1.00108 1.87960 1.19599 1.27577 1.95442 1.21360 0.89892 0.84953 1.01192 1.19471 0.93862 1.02448 0.93528 1.21029 0.94401 0.98623 0.97333 1.21090 0.94155 1.00505 0.98098 1.21061 0.99898 0.98439 0.91904 1.19222 0.93452 1.01453 0.93596 1.20793 1.02723 0.94167 0.96719 1.20550 0.75726 0.92705 0.79312 1.90940 1.49161 1.43063 1.51719 1.55444 1.64101 1.30844 1.31776 1.06686 0.76894 0.72866 0.76947 1.93588 1.76655 1.83838 1.40512 1.93596 1.42528 1.69787 1.86958 1.30335 1.13377 1.11424 1.15858 1.18990 0.98135 0.84966 0.98903 1.21011 1.26204 0.99743 1.08765 0.91931 1.25075 0.96812 0.96656 0.96018 1.69967 1.43771 1.08924 1.30171 0.86389 0.80540 0.78832 0.81381 1.19632 1.20804 1.20760 1.20861 0.93416 0.97900 0.97686 0.94019 0.93943 0.89572 0.92289 0.92186 0.86024 0.85665 0.85749 0.86775 0.86988 0.73677 0.85091 0.86079 0.94766 0.94602 0.92571 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.82 10.69 -35.23 -0.38 -4.20 16 3 C 0.10 0.95 6.06 36.01 0.22 1.16 16 4 C -0.09 -1.01 5.51 -104.62 -0.58 -1.59 16 5 C -0.10 -0.97 9.70 -39.59 -0.38 -1.36 16 6 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 7 C -0.09 -0.98 9.70 -39.58 -0.38 -1.36 16 8 C -0.08 -0.81 4.37 -104.62 -0.46 -1.27 16 9 C -0.10 -0.85 5.83 -29.03 -0.17 -1.02 16 10 C 0.53 6.80 7.56 -10.99 -0.08 6.71 16 11 O -0.48 -8.34 14.14 -11.57 -0.16 -8.50 16 12 N -1.06 -12.79 5.60 31.22 0.17 -12.61 16 13 S 2.57 46.14 5.11 -107.50 -0.55 45.59 16 14 O -0.96 -18.74 18.08 -57.54 -1.04 -19.78 16 15 O -0.94 -20.54 17.04 -64.79 -1.10 -21.65 16 16 C -0.58 -11.39 5.82 37.16 0.22 -11.17 16 17 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 18 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 22 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.08 -0.89 9.36 -39.58 -0.37 -1.26 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.11 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.11 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.43 3.22 8.79 -34.47 -0.30 2.92 16 38 H 0.13 2.57 7.19 -51.92 -0.37 2.19 16 39 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -38.98 384.78 -9.49 -48.48 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.13 Total: 0.49 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -1.83 Total: -24.11 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.91 Total: -38.55 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -2.68 Total: -54.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 46.14 SS G_CDS: -0.55 Total: 45.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.98 -9.49 -48.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189113367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.530 kcal (2) G-P(sol) polarization free energy of solvation -38.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds