Wall clock time and date at job start Sat Apr 11 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99334 * 2 1 4 4 C 1.53009 * 109.46770 * 180.02562 * 3 2 1 5 5 S 1.81397 * 109.47235 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54275 * 68.37271 * 5 4 3 7 7 O 1.42101 * 110.54298 * 291.62373 * 5 4 3 8 8 C 1.76193 * 104.44909 * 179.97438 * 5 4 3 9 9 C 1.38358 * 119.85503 * 269.72729 * 8 5 4 10 10 C 1.37959 * 120.14589 * 179.72319 * 9 8 5 11 11 C 1.39578 * 119.85289 * 0.55128 * 10 9 8 12 12 C 1.47843 * 120.14348 * 179.70243 * 11 10 9 13 13 O 1.21561 * 119.99761 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00396 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00442 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47440 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47099 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00132 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00141 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99953 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00516 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46815 * 90.00175 * 21 19 17 23 23 H 1.48495 * 109.47590 * 210.00321 * 21 19 17 24 24 H 1.48501 * 109.46984 * 330.00618 * 21 19 17 25 25 C 1.39573 * 119.70765 * 359.72069 * 11 10 9 26 26 C 1.37958 * 119.85913 * 0.02562 * 25 11 10 27 27 H 1.08997 * 109.47248 * 60.00446 * 1 2 3 28 28 H 1.09003 * 109.46551 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46853 * 299.99884 * 1 2 3 30 30 H 1.08995 * 109.47373 * 60.00099 * 3 2 1 31 31 H 1.09000 * 109.47242 * 299.99623 * 3 2 1 32 32 H 1.09004 * 109.47149 * 59.99885 * 4 3 2 33 33 H 1.09000 * 109.46805 * 299.99737 * 4 3 2 34 34 H 1.07999 * 119.92665 * 0.02562 * 9 8 5 35 35 H 1.08005 * 120.07283 * 180.24815 * 10 9 8 36 36 H 0.97006 * 120.00016 * 0.02562 * 14 12 11 37 37 H 1.09004 * 109.47245 * 300.00441 * 15 14 12 38 38 H 1.09004 * 109.46907 * 59.99987 * 15 14 12 39 39 H 1.08995 * 109.47222 * 300.00429 * 16 15 14 40 40 H 1.09004 * 109.46859 * 60.00230 * 16 15 14 41 41 H 0.97001 * 120.00580 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.06869 * 179.97438 * 25 11 10 43 43 H 1.07990 * 119.93198 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 16 4.2732 2.8420 -0.0014 6 8 4.0285 3.4973 1.2355 7 8 4.0275 3.4966 -1.2385 8 6 6.0107 2.5497 -0.0013 9 6 6.6909 2.4416 1.1986 10 6 8.0504 2.2071 1.2057 11 6 8.7417 2.0903 -0.0012 12 6 10.1997 1.8456 -0.0011 13 8 10.7991 1.7448 -1.0539 14 7 10.8643 1.7342 1.1660 15 6 12.3089 1.4911 1.1661 16 6 12.8120 1.4077 2.6087 17 6 14.2980 1.1570 2.6087 18 1 14.8304 1.0667 1.6734 19 6 14.9780 1.0440 3.8027 20 7 14.3298 1.1545 4.9417 21 14 16.8201 0.7340 3.8029 22 1 17.5406 2.0326 3.8013 23 1 17.1923 -0.0371 5.0162 24 1 17.1920 -0.0398 2.5912 25 6 8.0504 2.2060 -1.2082 26 6 6.6900 2.4353 -1.2013 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8568 0.6440 -0.8909 33 1 3.8574 0.6438 0.8892 34 1 6.1556 2.5361 2.1318 35 1 8.5796 2.1189 2.1432 36 1 10.3859 1.8143 2.0061 37 1 12.5196 0.5530 0.6526 38 1 12.8149 2.3083 0.6520 39 1 12.6014 2.3460 3.1218 40 1 12.3061 0.5907 3.1232 41 1 14.8081 1.0746 5.7818 42 1 8.5795 2.1171 -2.1456 43 1 6.1540 2.5255 -2.1345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273027885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:14 Heat of formation + Delta-G solvation = -129.803017 kcal Electronic energy + Delta-G solvation = -25928.425305 eV Core-core repulsion = 21873.202385 eV Total energy + Delta-G solvation = -4055.222920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -40.25688 -38.55790 -38.41697 -37.57990 -36.41434 -35.09790 -33.06934 -32.57538 -31.93492 -31.41361 -29.55525 -27.13124 -25.56095 -24.30864 -23.67419 -23.05505 -21.16165 -20.55626 -19.45213 -18.59584 -17.72401 -17.15306 -17.04722 -16.55024 -16.27499 -16.20612 -15.59017 -15.44874 -15.13990 -15.13463 -14.69924 -14.55844 -14.18212 -14.05177 -13.82385 -13.55630 -13.03242 -12.95231 -12.77441 -12.55186 -12.45095 -12.36344 -12.35345 -12.04063 -11.61768 -11.49480 -11.28402 -11.15817 -11.09551 -10.70212 -10.44017 -10.36324 -10.03646 -9.71449 -9.61564 -9.42857 -9.32226 -8.68981 -8.45224 -6.15017 -4.18317 -0.54542 0.13933 0.94403 2.31603 2.55313 3.02980 3.26119 3.31392 3.33901 3.40471 3.46266 3.62444 3.62529 3.97523 4.10733 4.36424 4.38559 4.49577 4.51699 4.68230 4.75575 4.76115 4.87533 4.91746 5.06241 5.07352 5.13873 5.22277 5.23344 5.53185 5.66037 5.71342 5.94302 6.21803 6.22598 6.38770 6.42451 6.60423 6.70383 7.41939 7.51906 7.76802 7.82701 8.18580 8.37775 8.87247 9.46988 10.96499 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.001798 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.326923 B =15569.671528 C =16060.650319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.381 6.381 3 C 0.071 3.929 4 C -0.616 4.616 5 S 2.506 3.494 6 O -0.928 6.928 7 O -0.929 6.929 8 C -0.647 4.647 9 C -0.028 4.028 10 C -0.109 4.109 11 C -0.066 4.066 12 C 0.540 3.460 13 O -0.537 6.537 14 N -0.710 5.710 15 C 0.119 3.881 16 C 0.012 3.988 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.085 4.085 26 C -0.031 4.031 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.398 0.602 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.263 0.737 42 H 0.148 0.852 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.705 0.076 -8.969 30.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C -0.007 4.007 4 C -0.743 4.743 5 S 2.685 3.315 6 O -0.926 6.926 7 O -0.927 6.927 8 C -0.735 4.735 9 C -0.047 4.047 10 C -0.128 4.128 11 C -0.070 4.070 12 C 0.325 3.675 13 O -0.416 6.416 14 N -0.360 5.360 15 C -0.002 4.002 16 C -0.026 4.026 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.105 4.105 26 C -0.050 4.050 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.234 0.766 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.166 0.834 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.492 0.605 -9.506 30.042 hybrid contribution 1.236 -0.703 0.623 1.552 sum -27.256 -0.098 -8.883 28.667 Atomic orbital electron populations 1.22869 0.80160 1.03471 1.00583 1.87941 1.20351 1.26168 1.95512 1.22084 0.89512 0.86990 1.02084 1.30511 1.05309 1.24814 1.13701 1.05153 0.74767 0.76639 0.74941 1.93602 1.84282 1.70279 1.44390 1.93596 1.84292 1.70332 1.44447 1.30519 1.24993 1.18251 0.99740 1.20910 0.94634 0.92383 0.96787 1.21566 0.94574 0.98735 0.97960 1.20596 0.94255 0.97616 0.94490 1.18256 0.86272 0.78191 0.84749 1.90775 1.69055 1.50608 1.31164 1.46332 1.11406 1.70702 1.07585 1.21843 0.76016 1.00484 1.01883 1.19343 0.96741 0.97933 0.88563 1.21024 0.92458 1.49973 0.92769 0.92182 1.24995 0.98783 0.94989 0.95475 1.69946 1.36109 1.49783 0.97353 0.86493 0.84938 0.78379 0.77632 1.20522 1.21136 1.19718 1.21442 0.93755 0.96801 0.98460 1.20940 0.94641 0.92675 0.96709 0.93499 0.89004 0.93473 0.91335 0.91387 0.83557 0.83493 0.83311 0.84032 0.76643 0.92110 0.92114 0.95821 0.95836 0.92774 0.83439 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.23 16 2 O -0.38 -2.82 10.70 -35.23 -0.38 -3.20 16 3 C 0.07 0.42 5.95 37.16 0.22 0.64 16 4 C -0.62 -3.18 6.35 37.16 0.24 -2.95 16 5 S 2.51 19.32 5.16 -107.50 -0.55 18.76 16 6 O -0.93 -9.57 17.10 -57.54 -0.98 -10.55 16 7 O -0.93 -9.49 17.11 -57.54 -0.98 -10.47 16 8 C -0.65 -5.83 5.66 -39.49 -0.22 -6.05 16 9 C -0.03 -0.26 9.45 -39.64 -0.37 -0.64 16 10 C -0.11 -1.16 9.54 -39.18 -0.37 -1.53 16 11 C -0.07 -0.86 5.87 -104.97 -0.62 -1.48 16 12 C 0.54 8.95 7.77 -12.33 -0.10 8.85 16 13 O -0.54 -10.68 16.35 5.31 0.09 -10.59 16 14 N -0.71 -11.89 5.51 -61.25 -0.34 -12.23 16 15 C 0.12 2.45 5.61 -4.04 -0.02 2.42 16 16 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 17 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 21 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.08 -0.98 9.60 -39.19 -0.38 -1.35 16 26 C -0.03 -0.29 9.45 -39.64 -0.37 -0.66 16 27 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.15 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.15 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.15 1.04 7.55 -52.49 -0.40 0.65 16 35 H 0.14 1.26 6.41 -52.48 -0.34 0.92 16 36 H 0.40 5.63 6.51 -40.82 -0.27 5.37 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.15 1.65 7.65 -52.48 -0.40 1.25 16 43 H 0.15 1.04 7.56 -52.49 -0.40 0.65 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -36.53 383.28 -9.09 -45.62 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.99 Total: 0.08 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.44 Total: -14.36 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.40 Total: -37.10 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -2.26 Total: -34.81 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 19.32 SS G_CDS: -0.55 Total: 18.76 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.53 -9.09 -45.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273027885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.188 kcal (2) G-P(sol) polarization free energy of solvation -36.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds