Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99334 * 2 1 4 4 C 1.53009 * 109.46770 * 180.02562 * 3 2 1 5 5 S 1.81397 * 109.47235 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54275 * 68.37271 * 5 4 3 7 7 O 1.42101 * 110.54298 * 291.62373 * 5 4 3 8 8 C 1.76193 * 104.44909 * 179.97438 * 5 4 3 9 9 C 1.38358 * 119.85503 * 269.72729 * 8 5 4 10 10 C 1.37959 * 120.14589 * 179.72319 * 9 8 5 11 11 C 1.39578 * 119.85289 * 0.55128 * 10 9 8 12 12 C 1.47843 * 120.14348 * 179.70243 * 11 10 9 13 13 O 1.21561 * 119.99761 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00396 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00442 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47440 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47099 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00132 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00141 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99953 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00516 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46815 * 90.00175 * 21 19 17 23 23 H 1.48495 * 109.47590 * 210.00321 * 21 19 17 24 24 H 1.48501 * 109.46984 * 330.00618 * 21 19 17 25 25 C 1.39573 * 119.70765 * 359.72069 * 11 10 9 26 26 C 1.37958 * 119.85913 * 0.02562 * 25 11 10 27 27 H 1.08997 * 109.47248 * 60.00446 * 1 2 3 28 28 H 1.09003 * 109.46551 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46853 * 299.99884 * 1 2 3 30 30 H 1.08995 * 109.47373 * 60.00099 * 3 2 1 31 31 H 1.09000 * 109.47242 * 299.99623 * 3 2 1 32 32 H 1.09004 * 109.47149 * 59.99885 * 4 3 2 33 33 H 1.09000 * 109.46805 * 299.99737 * 4 3 2 34 34 H 1.07999 * 119.92665 * 0.02562 * 9 8 5 35 35 H 1.08005 * 120.07283 * 180.24815 * 10 9 8 36 36 H 0.97006 * 120.00016 * 0.02562 * 14 12 11 37 37 H 1.09004 * 109.47245 * 300.00441 * 15 14 12 38 38 H 1.09004 * 109.46907 * 59.99987 * 15 14 12 39 39 H 1.08995 * 109.47222 * 300.00429 * 16 15 14 40 40 H 1.09004 * 109.46859 * 60.00230 * 16 15 14 41 41 H 0.97001 * 120.00580 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.06869 * 179.97438 * 25 11 10 43 43 H 1.07990 * 119.93198 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 16 4.2732 2.8420 -0.0014 6 8 4.0285 3.4973 1.2355 7 8 4.0275 3.4966 -1.2385 8 6 6.0107 2.5497 -0.0013 9 6 6.6909 2.4416 1.1986 10 6 8.0504 2.2071 1.2057 11 6 8.7417 2.0903 -0.0012 12 6 10.1997 1.8456 -0.0011 13 8 10.7991 1.7448 -1.0539 14 7 10.8643 1.7342 1.1660 15 6 12.3089 1.4911 1.1661 16 6 12.8120 1.4077 2.6087 17 6 14.2980 1.1570 2.6087 18 1 14.8304 1.0667 1.6734 19 6 14.9780 1.0440 3.8027 20 7 14.3298 1.1545 4.9417 21 14 16.8201 0.7340 3.8029 22 1 17.5406 2.0326 3.8013 23 1 17.1923 -0.0371 5.0162 24 1 17.1920 -0.0398 2.5912 25 6 8.0504 2.2060 -1.2082 26 6 6.6900 2.4353 -1.2013 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8568 0.6440 -0.8909 33 1 3.8574 0.6438 0.8892 34 1 6.1556 2.5361 2.1318 35 1 8.5796 2.1189 2.1432 36 1 10.3859 1.8143 2.0061 37 1 12.5196 0.5530 0.6526 38 1 12.8149 2.3083 0.6520 39 1 12.6014 2.3460 3.1218 40 1 12.3061 0.5907 3.1232 41 1 14.8081 1.0746 5.7818 42 1 8.5795 2.1171 -2.1456 43 1 6.1540 2.5255 -2.1345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273027885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = -157.259574 kcal Electronic energy + Delta-G solvation = -25929.615910 eV Core-core repulsion = 21873.202385 eV Total energy + Delta-G solvation = -4056.413526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.38390 -39.50821 -38.96886 -38.29198 -37.12841 -36.73682 -34.94108 -33.09540 -32.95005 -32.24749 -31.23590 -27.47631 -27.15216 -25.42212 -24.31138 -23.94523 -22.88393 -21.80488 -20.13207 -19.43875 -18.74407 -18.42217 -17.75506 -17.57505 -17.16910 -16.79385 -16.60082 -16.54886 -16.50501 -16.00816 -15.88511 -15.68084 -15.17014 -15.03857 -14.65601 -14.56856 -14.33565 -14.08885 -13.95276 -13.28085 -13.26067 -13.20397 -13.16550 -12.96282 -12.70322 -12.56562 -12.47767 -12.37357 -12.28779 -12.13630 -11.84141 -11.72177 -11.49373 -11.08660 -10.74684 -10.64965 -10.60399 -10.21861 -10.11819 -8.25454 -6.35812 -1.17417 -0.72915 0.14835 1.41814 1.41894 1.47431 1.53261 1.71735 2.04909 2.40650 2.41928 2.65234 3.02873 3.03356 3.09672 3.50366 3.55817 3.58998 3.76122 3.78506 4.13339 4.17426 4.20851 4.38719 4.44346 4.45186 4.47344 4.48581 4.58536 4.73375 4.80028 4.80730 4.86088 4.88258 4.88656 5.11527 5.15373 5.43515 5.54816 5.59091 5.75819 6.05543 6.13345 6.43413 6.76871 7.04119 7.33622 8.86217 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.001798 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.326923 B =15569.671528 C =16060.650319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.403 6.403 3 C 0.055 3.945 4 C -0.598 4.598 5 S 2.526 3.474 6 O -0.955 6.955 7 O -0.955 6.955 8 C -0.642 4.642 9 C -0.030 4.030 10 C -0.108 4.108 11 C -0.089 4.089 12 C 0.543 3.457 13 O -0.577 6.577 14 N -0.707 5.707 15 C 0.138 3.862 16 C 0.021 3.979 17 C -0.548 4.548 18 H 0.059 0.941 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.093 4.093 26 C -0.030 4.030 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.412 0.588 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.010 0.990 40 H 0.012 0.988 41 H 0.266 0.734 42 H 0.144 0.856 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.236 -0.322 -8.976 31.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.323 6.323 3 C -0.023 4.023 4 C -0.729 4.729 5 S 2.706 3.294 6 O -0.952 6.952 7 O -0.953 6.953 8 C -0.728 4.728 9 C -0.049 4.049 10 C -0.127 4.127 11 C -0.092 4.092 12 C 0.330 3.670 13 O -0.458 6.458 14 N -0.357 5.357 15 C 0.015 3.985 16 C -0.016 4.016 17 C -0.586 4.586 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.789 3.211 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.191 1.191 25 C -0.112 4.112 26 C -0.048 4.048 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.191 0.809 35 H 0.173 0.827 36 H 0.249 0.751 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.162 0.838 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -30.026 0.241 -9.504 31.496 hybrid contribution 1.536 -0.594 0.615 1.758 sum -28.490 -0.353 -8.889 29.847 Atomic orbital electron populations 1.23072 0.78948 1.04407 1.01534 1.87891 1.21817 1.26832 1.95717 1.22325 0.89722 0.86952 1.03304 1.30319 1.04885 1.22005 1.15670 1.04571 0.73795 0.77338 0.73652 1.93568 1.84277 1.72057 1.45283 1.93563 1.84281 1.72101 1.45320 1.30826 1.25955 1.16499 0.99545 1.21238 0.94098 0.91504 0.98011 1.21738 0.95291 0.98106 0.97591 1.20325 0.91910 1.00841 0.96173 1.18765 0.87782 0.76713 0.83697 1.90744 1.70316 1.52360 1.32368 1.46106 1.09958 1.70976 1.08707 1.21337 0.78230 0.99694 0.99234 1.19155 0.95579 0.96576 0.90314 1.21454 0.94161 1.50064 0.92970 0.92257 1.25847 1.03463 0.94648 0.95098 1.70046 1.37925 1.50521 0.97924 0.85454 0.79321 0.78466 0.77860 1.19853 1.20525 1.19094 1.21524 0.94723 0.97102 0.97895 1.21196 0.93772 0.91821 0.98043 0.92537 0.88187 0.92584 0.90323 0.90306 0.81713 0.81694 0.80852 0.82680 0.75097 0.92959 0.93116 0.97121 0.96982 0.92519 0.83799 0.81035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 11.01 113.37 1.25 1.36 16 2 O -0.40 -5.05 10.70 -148.98 -1.59 -6.65 16 3 C 0.05 0.51 5.95 71.99 0.43 0.94 16 4 C -0.60 -4.37 6.35 71.99 0.46 -3.91 16 5 S 2.53 33.20 5.16 -56.49 -0.29 32.91 16 6 O -0.95 -17.76 17.10 -127.65 -2.18 -19.94 16 7 O -0.96 -17.70 17.11 -127.65 -2.18 -19.89 16 8 C -0.64 -10.16 5.66 22.33 0.13 -10.03 16 9 C -0.03 -0.49 9.45 22.23 0.21 -0.28 16 10 C -0.11 -2.15 9.54 22.53 0.21 -1.93 16 11 C -0.09 -2.29 5.87 -20.09 -0.12 -2.40 16 12 C 0.54 18.26 7.77 86.79 0.67 18.94 16 13 O -0.58 -23.56 16.35 -3.91 -0.06 -23.63 16 14 N -0.71 -23.97 5.51 -465.97 -2.57 -26.53 16 15 C 0.14 5.80 5.61 86.38 0.48 6.29 16 16 C 0.02 1.04 5.09 29.85 0.15 1.19 16 17 C -0.55 -30.11 9.11 25.60 0.23 -29.87 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 19 C 0.01 0.47 5.46 84.65 0.46 0.93 16 20 N -0.92 -53.31 13.29 21.45 0.28 -53.02 16 21 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 C -0.09 -2.08 9.60 22.53 0.22 -1.87 16 26 C -0.03 -0.51 9.45 22.23 0.21 -0.30 16 27 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.17 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.17 1.94 7.55 -2.91 -0.02 1.91 16 35 H 0.16 2.54 6.41 -2.91 -0.02 2.52 16 36 H 0.41 11.62 6.51 -92.70 -0.60 11.02 16 37 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.14 3.26 7.65 -2.91 -0.02 3.24 16 43 H 0.17 2.04 7.56 -2.92 -0.02 2.02 16 Total: -1.00 -78.49 383.28 -1.15 -79.64 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.43 Total: 12.97 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 5.00 Total: -20.95 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -2.28 Total: -79.56 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -6.03 Total: -70.10 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 33.20 SS G_CDS: -0.29 Total: 32.91 kcal Total: -78.49 -1.15 -79.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273027885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.622 kcal (2) G-P(sol) polarization free energy of solvation -78.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds