Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99649 * 2 1 4 4 N 1.46502 * 109.47046 * 124.99779 * 3 2 1 5 5 C 1.46490 * 120.00387 * 275.00351 * 4 3 2 6 6 C 1.50699 * 109.47476 * 274.99911 * 5 4 3 7 7 H 1.08002 * 119.99563 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00568 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99524 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00208 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46794 * 90.00044 * 10 8 6 12 12 H 1.48499 * 109.46906 * 209.99953 * 10 8 6 13 13 H 1.48497 * 109.46818 * 330.00088 * 10 8 6 14 14 S 1.65605 * 119.99401 * 95.00340 * 4 3 2 15 15 O 1.42091 * 106.40306 * 336.45778 * 14 4 3 16 16 O 1.42107 * 106.39798 * 203.54014 * 14 4 3 17 17 C 1.76195 * 107.21922 * 90.00136 * 14 4 3 18 18 C 1.38247 * 119.92813 * 270.02258 * 17 14 4 19 19 C 1.38245 * 120.14929 * 179.76958 * 18 17 14 20 20 C 1.38564 * 119.99792 * 0.45790 * 19 18 17 21 21 O 1.35995 * 120.07625 * 179.79495 * 20 19 18 22 22 C 1.42901 * 116.99655 * 359.72270 * 21 20 19 23 23 C 1.39158 * 119.84990 * 359.51717 * 20 19 18 24 24 O 1.35997 * 120.06823 * 180.23182 * 23 20 19 25 25 C 1.42902 * 116.99582 * 180.02562 * 24 23 20 26 26 C 1.38241 * 119.92636 * 89.99503 * 17 14 4 27 27 H 1.07995 * 120.00734 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99553 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00734 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46806 * 5.00306 * 3 2 1 31 31 H 1.08992 * 109.47539 * 245.00305 * 3 2 1 32 32 H 1.09004 * 109.47331 * 35.00018 * 5 4 3 33 33 H 1.09001 * 109.47264 * 154.99910 * 5 4 3 34 34 H 0.97005 * 119.99799 * 179.97438 * 9 8 6 35 35 H 1.07998 * 119.92593 * 0.02562 * 18 17 14 36 36 H 1.07997 * 119.99909 * 180.23310 * 19 18 17 37 37 H 1.08998 * 109.47043 * 59.99780 * 22 21 20 38 38 H 1.08996 * 109.46732 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.47144 * 300.00182 * 22 21 20 40 40 H 1.09007 * 109.46665 * 179.97438 * 25 24 23 41 41 H 1.08998 * 109.47287 * 299.99772 * 25 24 23 42 42 H 1.09001 * 109.47198 * 60.00379 * 25 24 23 43 43 H 1.08004 * 120.00331 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5284 1.7621 2.4523 6 6 2.5989 3.2646 2.5451 7 1 2.9544 3.8414 1.7041 8 6 2.2087 3.9029 3.7033 9 7 1.7744 3.2005 4.7268 10 14 2.2968 5.7653 3.8185 11 1 1.0123 6.3510 3.3575 12 1 2.5447 6.1628 5.2277 13 1 3.4033 6.2623 2.9619 14 16 4.5712 0.8762 0.9172 15 8 4.5923 0.0265 -0.2215 16 8 5.0503 0.4766 2.1941 17 6 5.4767 2.3219 0.4762 18 6 5.6111 2.6724 -0.8543 19 6 6.3165 3.8084 -1.2053 20 6 6.8987 4.5934 -0.2230 21 8 7.5965 5.7089 -0.5667 22 6 7.6946 6.0090 -1.9604 23 6 6.7629 4.2408 1.1163 24 8 7.3285 5.0107 2.0843 25 6 7.1486 4.5875 3.4373 26 6 6.0506 3.1036 1.4614 27 1 -0.5401 0.9352 0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3584 2.1316 0.0896 31 1 2.6212 1.4028 -0.9313 32 1 1.4982 1.4370 2.5983 33 1 3.1613 1.3205 3.2220 34 1 1.5002 3.6496 5.5418 35 1 5.1606 2.0596 -1.6211 36 1 6.4168 4.0820 -2.2452 37 1 6.6956 6.1496 -2.3729 38 1 8.2758 6.9211 -2.0956 39 1 8.1877 5.1847 -2.4757 40 1 7.6489 5.2877 4.1065 41 1 6.0842 4.5589 3.6706 42 1 7.5759 3.5932 3.5669 43 1 5.9441 2.8276 2.5002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292824392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -91.570575 kcal Electronic energy + Delta-G solvation = -28983.259809 eV Core-core repulsion = 24929.694772 eV Total energy + Delta-G solvation = -4053.565037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.47036 -38.41114 -36.84183 -36.67841 -36.34936 -35.26219 -33.23442 -31.91867 -30.46110 -30.29495 -27.53628 -27.38509 -27.05175 -24.94816 -22.79096 -22.25695 -22.09263 -19.70233 -19.05077 -18.19467 -17.32881 -16.84025 -16.77509 -16.42368 -16.05313 -15.88609 -15.59838 -15.15959 -14.74515 -14.55668 -14.48129 -14.39712 -13.69749 -13.24766 -13.02740 -12.95330 -12.72371 -12.47810 -12.21548 -12.17717 -11.74702 -11.63951 -11.39189 -11.34580 -11.26721 -11.21490 -11.19508 -11.00993 -10.90286 -10.76974 -10.56179 -10.42706 -10.07475 -9.82820 -9.06746 -8.80415 -8.53356 -8.13384 -7.87824 -6.15004 -4.21390 0.89346 1.17944 1.42831 2.63032 3.14018 3.20950 3.29220 3.33021 3.40030 3.48054 3.80989 4.33307 4.34019 4.66417 4.82213 4.99861 5.01212 5.08218 5.19100 5.27549 5.30462 5.32670 5.42799 5.47115 5.49101 5.51385 5.65082 5.68360 5.82579 5.92077 6.11412 6.17164 6.26605 6.29094 6.46343 6.66881 6.96794 7.02131 7.05959 7.32447 7.39636 7.58303 7.60145 7.82295 8.10994 8.84262 9.44885 10.92767 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.006004 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.600462 B = 4662.735759 C = 6387.313226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.156 3.844 4 N -0.976 5.976 5 C 0.244 3.756 6 C -0.541 4.541 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.887 5.887 10 Si 0.883 3.117 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.271 1.271 14 S 2.691 3.309 15 O -0.976 6.976 16 O -0.958 6.958 17 C -0.662 4.662 18 C -0.020 4.020 19 C -0.201 4.201 20 C 0.144 3.856 21 O -0.304 6.304 22 C 0.024 3.976 23 C 0.079 3.921 24 O -0.309 6.309 25 C 0.018 3.982 26 C -0.052 4.052 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.265 0.735 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 1.543 -11.202 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.181 4.181 3 C 0.030 3.970 4 N -0.815 5.815 5 C 0.122 3.878 6 C -0.580 4.580 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.525 5.525 10 Si 0.711 3.289 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.196 1.196 14 S 2.781 3.219 15 O -0.966 6.966 16 O -0.948 6.948 17 C -0.747 4.747 18 C -0.040 4.040 19 C -0.220 4.220 20 C 0.097 3.903 21 O -0.217 6.217 22 C -0.071 4.071 23 C 0.033 3.967 24 O -0.222 6.222 25 C -0.077 4.077 26 C -0.071 4.071 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.614 1.081 -10.787 13.248 hybrid contribution -0.184 1.740 -0.039 1.750 sum 7.430 2.821 -10.827 13.430 Atomic orbital electron populations 1.23777 0.95795 1.01589 1.01291 1.23438 0.96327 0.99272 0.99046 1.20216 0.93132 0.95627 0.88005 1.57386 1.23620 1.82660 1.17818 1.19272 0.97282 0.94835 0.76392 1.21565 1.44690 0.91970 0.99776 0.91965 1.24897 0.95010 0.98102 0.95553 1.69932 1.42988 1.35491 1.04134 0.86721 0.78813 0.85875 0.77528 1.20481 1.20954 1.19578 1.01899 0.73017 0.73881 0.73130 1.93510 1.87010 1.63438 1.52656 1.93544 1.80050 1.80611 1.40612 1.30931 1.18652 1.24953 1.00195 1.20559 0.94505 0.94640 0.94259 1.21063 1.04473 0.97911 0.98557 1.18452 0.93520 0.87436 0.90869 1.86197 1.68851 1.40263 1.26362 1.23107 1.02095 1.01786 0.80106 1.18242 0.99042 0.92834 0.86599 1.86104 1.71608 1.49364 1.15160 1.23211 1.03265 1.01253 0.80011 1.20864 0.93897 0.91875 1.00514 0.88397 0.88870 0.87441 0.89393 0.90723 0.93825 0.92883 0.92560 0.84180 0.84275 0.92444 0.88181 0.92540 0.88195 0.91362 0.92339 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 29.01 0.42 -2.22 16 2 C -0.16 -2.56 9.84 -36.02 -0.35 -2.91 16 3 C 0.16 2.66 5.78 -5.19 -0.03 2.63 16 4 N -0.98 -19.66 2.75 -116.95 -0.32 -19.98 16 5 C 0.24 5.86 5.43 -5.20 -0.03 5.83 16 6 C -0.54 -13.79 9.38 -34.44 -0.32 -14.11 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 10 Si 0.88 20.50 29.54 -169.99 -5.02 15.48 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 S 2.69 53.11 5.64 -107.50 -0.61 52.51 16 15 O -0.98 -19.03 16.24 -57.17 -0.93 -19.96 16 16 O -0.96 -21.54 15.83 -57.17 -0.90 -22.44 16 17 C -0.66 -12.12 5.97 -39.58 -0.24 -12.36 16 18 C -0.02 -0.31 9.51 -39.58 -0.38 -0.69 16 19 C -0.20 -2.84 9.04 -39.46 -0.36 -3.20 16 20 C 0.14 2.34 6.70 -39.12 -0.26 2.08 16 21 O -0.30 -4.48 10.28 -34.23 -0.35 -4.83 16 22 C 0.02 0.22 9.81 101.05 0.99 1.22 16 23 C 0.08 1.44 6.70 -39.12 -0.26 1.18 16 24 O -0.31 -5.46 10.28 -34.24 -0.35 -5.81 16 25 C 0.02 0.26 9.81 101.05 0.99 1.25 16 26 C -0.05 -0.98 8.51 -39.46 -0.34 -1.31 16 27 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 28 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.09 1.49 7.76 -51.93 -0.40 1.08 16 31 H 0.07 1.10 7.61 -51.93 -0.40 0.70 16 32 H 0.04 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.14 1.86 7.61 -52.49 -0.40 1.46 16 36 H 0.14 1.44 6.30 -52.49 -0.33 1.11 16 37 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 40 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.12 7.66 -51.93 -0.40 0.72 16 42 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 43 H 0.16 2.99 5.85 -52.48 -0.31 2.68 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -32.35 378.62 -8.16 -40.51 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.85 Total: 3.67 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -0.26 Total: -20.93 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.41 Total: -43.90 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -2.54 Total: -53.05 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 53.11 SS G_CDS: -0.61 Total: 52.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.35 -8.16 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292824392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.058 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds