Wall clock time and date at job start Sat Apr 11 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99649 * 2 1 4 4 N 1.46502 * 109.47046 * 124.99779 * 3 2 1 5 5 C 1.46490 * 120.00387 * 275.00351 * 4 3 2 6 6 C 1.50699 * 109.47476 * 274.99911 * 5 4 3 7 7 H 1.08002 * 119.99563 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00568 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99524 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00208 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46794 * 90.00044 * 10 8 6 12 12 H 1.48499 * 109.46906 * 209.99953 * 10 8 6 13 13 H 1.48497 * 109.46818 * 330.00088 * 10 8 6 14 14 S 1.65605 * 119.99401 * 95.00340 * 4 3 2 15 15 O 1.42091 * 106.40306 * 336.45778 * 14 4 3 16 16 O 1.42107 * 106.39798 * 203.54014 * 14 4 3 17 17 C 1.76195 * 107.21922 * 90.00136 * 14 4 3 18 18 C 1.38247 * 119.92813 * 270.02258 * 17 14 4 19 19 C 1.38245 * 120.14929 * 179.76958 * 18 17 14 20 20 C 1.38564 * 119.99792 * 0.45790 * 19 18 17 21 21 O 1.35995 * 120.07625 * 179.79495 * 20 19 18 22 22 C 1.42901 * 116.99655 * 359.72270 * 21 20 19 23 23 C 1.39158 * 119.84990 * 359.51717 * 20 19 18 24 24 O 1.35997 * 120.06823 * 180.23182 * 23 20 19 25 25 C 1.42902 * 116.99582 * 180.02562 * 24 23 20 26 26 C 1.38241 * 119.92636 * 89.99503 * 17 14 4 27 27 H 1.07995 * 120.00734 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99553 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00734 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46806 * 5.00306 * 3 2 1 31 31 H 1.08992 * 109.47539 * 245.00305 * 3 2 1 32 32 H 1.09004 * 109.47331 * 35.00018 * 5 4 3 33 33 H 1.09001 * 109.47264 * 154.99910 * 5 4 3 34 34 H 0.97005 * 119.99799 * 179.97438 * 9 8 6 35 35 H 1.07998 * 119.92593 * 0.02562 * 18 17 14 36 36 H 1.07997 * 119.99909 * 180.23310 * 19 18 17 37 37 H 1.08998 * 109.47043 * 59.99780 * 22 21 20 38 38 H 1.08996 * 109.46732 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.47144 * 300.00182 * 22 21 20 40 40 H 1.09007 * 109.46665 * 179.97438 * 25 24 23 41 41 H 1.08998 * 109.47287 * 299.99772 * 25 24 23 42 42 H 1.09001 * 109.47198 * 60.00379 * 25 24 23 43 43 H 1.08004 * 120.00331 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5284 1.7621 2.4523 6 6 2.5989 3.2646 2.5451 7 1 2.9544 3.8414 1.7041 8 6 2.2087 3.9029 3.7033 9 7 1.7744 3.2005 4.7268 10 14 2.2968 5.7653 3.8185 11 1 1.0123 6.3510 3.3575 12 1 2.5447 6.1628 5.2277 13 1 3.4033 6.2623 2.9619 14 16 4.5712 0.8762 0.9172 15 8 4.5923 0.0265 -0.2215 16 8 5.0503 0.4766 2.1941 17 6 5.4767 2.3219 0.4762 18 6 5.6111 2.6724 -0.8543 19 6 6.3165 3.8084 -1.2053 20 6 6.8987 4.5934 -0.2230 21 8 7.5965 5.7089 -0.5667 22 6 7.6946 6.0090 -1.9604 23 6 6.7629 4.2408 1.1163 24 8 7.3285 5.0107 2.0843 25 6 7.1486 4.5875 3.4373 26 6 6.0506 3.1036 1.4614 27 1 -0.5401 0.9352 0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3584 2.1316 0.0896 31 1 2.6212 1.4028 -0.9313 32 1 1.4982 1.4370 2.5983 33 1 3.1613 1.3205 3.2220 34 1 1.5002 3.6496 5.5418 35 1 5.1606 2.0596 -1.6211 36 1 6.4168 4.0820 -2.2452 37 1 6.6956 6.1496 -2.3729 38 1 8.2758 6.9211 -2.0956 39 1 8.1877 5.1847 -2.4757 40 1 7.6489 5.2877 4.1065 41 1 6.0842 4.5589 3.6706 42 1 7.5759 3.5932 3.5669 43 1 5.9441 2.8276 2.5002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292824392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:33 Heat of formation + Delta-G solvation = -113.138880 kcal Electronic energy + Delta-G solvation = -28984.195081 eV Core-core repulsion = 24929.694772 eV Total energy + Delta-G solvation = -4054.500309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -41.67091 -39.57116 -38.35236 -38.00031 -37.89601 -36.89170 -34.99957 -33.52456 -31.68630 -31.51368 -29.33197 -28.34705 -28.17881 -26.52822 -24.29217 -23.84313 -23.31874 -20.97212 -20.41093 -19.52828 -18.66129 -18.62423 -18.16857 -18.01380 -17.28320 -17.20489 -17.14704 -16.34415 -16.25461 -15.90539 -15.86069 -15.52087 -15.21028 -14.68052 -14.31837 -14.26034 -14.19488 -13.90425 -13.71547 -13.41365 -13.27067 -13.12310 -13.07189 -12.98195 -12.72079 -12.51466 -12.37739 -12.32780 -12.29384 -12.24197 -12.18072 -11.94905 -11.76833 -11.62959 -10.59100 -10.28358 -10.04083 -9.78827 -9.15561 -8.18215 -6.30251 -0.57481 -0.20625 0.17173 1.36109 1.39155 1.41230 1.48399 2.06388 2.13101 2.19775 2.36304 2.44679 2.81544 3.13550 3.30769 3.65179 3.83634 3.95939 4.02938 4.16022 4.19126 4.27528 4.30320 4.38087 4.40217 4.42608 4.47320 4.62600 4.69449 4.72702 4.79640 4.94724 4.97331 5.00366 5.11947 5.31173 5.43144 5.47409 5.71681 5.78260 5.82137 5.91549 6.02620 6.10037 6.39400 6.81491 7.39146 8.89854 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.006004 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.600462 B = 4662.735759 C = 6387.313226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.188 4.188 3 C 0.148 3.852 4 N -0.981 5.981 5 C 0.261 3.739 6 C -0.538 4.538 7 H 0.064 0.936 8 C 0.021 3.979 9 N -0.922 5.922 10 Si 0.941 3.059 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.271 1.271 14 S 2.700 3.300 15 O -0.974 6.974 16 O -0.996 6.996 17 C -0.677 4.677 18 C -0.017 4.017 19 C -0.187 4.187 20 C 0.146 3.854 21 O -0.322 6.322 22 C 0.010 3.990 23 C 0.055 3.945 24 O -0.320 6.320 25 C 0.014 3.986 26 C -0.073 4.073 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.266 0.734 35 H 0.168 0.832 36 H 0.186 0.814 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 3.071 -14.092 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.208 4.208 3 C 0.024 3.976 4 N -0.818 5.818 5 C 0.138 3.862 6 C -0.577 4.577 7 H 0.082 0.918 8 C -0.179 4.179 9 N -0.562 5.562 10 Si 0.767 3.233 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.196 1.196 14 S 2.793 3.207 15 O -0.965 6.965 16 O -0.987 6.987 17 C -0.766 4.766 18 C -0.036 4.036 19 C -0.207 4.207 20 C 0.099 3.901 21 O -0.235 6.235 22 C -0.084 4.084 23 C 0.009 3.991 24 O -0.234 6.234 25 C -0.081 4.081 26 C -0.093 4.093 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.185 0.815 36 H 0.203 0.797 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.095 0.905 40 H 0.149 0.851 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.900 2.584 -13.703 16.027 hybrid contribution -0.219 1.304 0.732 1.511 sum 7.681 3.888 -12.971 15.568 Atomic orbital electron populations 1.24021 0.95263 1.02895 0.98432 1.23399 0.97037 0.98642 1.01672 1.20477 0.93120 0.96330 0.87717 1.57269 1.24546 1.82714 1.17301 1.18776 0.95645 0.94019 0.77796 1.21772 1.43629 0.92651 0.99673 0.91776 1.25602 0.94901 1.02006 0.95357 1.70040 1.44293 1.37133 1.04708 0.85809 0.78829 0.81192 0.77499 1.19685 1.20650 1.19578 1.01364 0.72714 0.74251 0.72400 1.93496 1.87010 1.63915 1.52033 1.93491 1.80642 1.81829 1.42696 1.30594 1.19840 1.24547 1.01636 1.20967 0.93991 0.95250 0.93423 1.21520 1.02433 0.96369 1.00329 1.18678 0.93008 0.87993 0.90454 1.86187 1.68167 1.39322 1.29828 1.23550 1.03729 1.03650 0.77460 1.18517 0.99762 0.92940 0.87887 1.86075 1.71750 1.49718 1.15902 1.23365 1.02275 1.02752 0.79659 1.20756 0.95507 0.93063 0.99972 0.87853 0.86755 0.87723 0.89495 0.88267 0.95415 0.95943 0.92488 0.81483 0.79679 0.90971 0.85965 0.90508 0.85058 0.93626 0.91710 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.49 14.32 67.78 0.97 -3.52 16 2 C -0.19 -5.83 9.84 25.65 0.25 -5.57 16 3 C 0.15 4.94 5.78 85.63 0.50 5.44 16 4 N -0.98 -40.17 2.75 -523.93 -1.44 -41.61 16 5 C 0.26 13.04 5.43 85.63 0.47 13.50 16 6 C -0.54 -28.03 9.38 25.60 0.24 -27.79 16 7 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 8 C 0.02 1.15 5.46 84.66 0.46 1.61 16 9 N -0.92 -52.58 13.29 21.45 0.28 -52.29 16 10 Si 0.94 42.45 29.54 68.60 2.03 44.48 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 14 S 2.70 108.47 5.64 -56.49 -0.32 108.16 16 15 O -0.97 -37.41 16.24 -128.00 -2.08 -39.48 16 16 O -1.00 -47.22 15.83 -128.00 -2.03 -49.25 16 17 C -0.68 -24.69 5.97 22.27 0.13 -24.56 16 18 C -0.02 -0.48 9.51 22.27 0.21 -0.27 16 19 C -0.19 -4.64 9.04 22.35 0.20 -4.44 16 20 C 0.15 4.44 6.70 22.57 0.15 4.60 16 21 O -0.32 -8.62 10.28 -79.62 -0.82 -9.44 16 22 C 0.01 0.14 9.81 113.37 1.11 1.25 16 23 C 0.06 2.00 6.70 22.57 0.15 2.15 16 24 O -0.32 -11.39 10.28 -79.65 -0.82 -12.21 16 25 C 0.01 0.43 9.81 113.37 1.11 1.54 16 26 C -0.07 -2.83 8.51 22.35 0.19 -2.64 16 27 H 0.10 2.64 7.84 -2.91 -0.02 2.62 16 28 H 0.11 2.55 8.06 -2.91 -0.02 2.52 16 29 H 0.10 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.09 2.88 7.76 -2.39 -0.02 2.86 16 31 H 0.10 2.75 7.61 -2.39 -0.02 2.73 16 32 H 0.03 1.45 8.11 -2.38 -0.02 1.43 16 33 H 0.02 1.26 6.91 -2.39 -0.02 1.24 16 34 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 35 H 0.17 3.81 7.61 -2.91 -0.02 3.79 16 36 H 0.19 2.77 6.30 -2.91 -0.02 2.75 16 37 H 0.07 0.85 7.65 -2.39 -0.02 0.83 16 38 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 0.81 7.68 -2.39 -0.02 0.79 16 40 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 41 H 0.05 1.58 7.66 -2.39 -0.02 1.56 16 42 H 0.06 1.85 7.66 -2.39 -0.02 1.83 16 43 H 0.14 5.66 5.85 -2.91 -0.02 5.65 16 Total: -1.00 -71.75 378.62 1.97 -69.77 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 1.02 Total: 20.58 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 6.15 Total: -38.70 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -1.16 Total: -93.91 kcal Atomic # 8 Polarization: -104.64 SS G_CDS: -5.74 Total: -110.38 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 108.47 SS G_CDS: -0.32 Total: 108.16 kcal Total: -71.75 1.97 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292824392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.364 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds