Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42103 * 108.57967 * 2 1 4 4 O 1.42094 * 108.57874 * 228.97446 * 2 1 3 5 5 C 1.81401 * 101.91976 * 114.48569 * 2 1 3 6 6 C 1.50703 * 109.46877 * 179.97438 * 5 2 1 7 7 C 1.35162 * 125.60854 * 90.00431 * 6 5 2 8 8 C 1.40332 * 107.12660 * 180.02562 * 7 6 5 9 9 C 1.36671 * 106.70141 * 359.97438 * 8 7 6 10 10 C 1.46512 * 125.99432 * 179.97438 * 9 8 7 11 11 O 1.21742 * 120.00001 * 7.78597 * 10 9 8 12 12 N 1.34779 * 120.00175 * 187.78466 * 10 9 8 13 13 C 1.36851 * 120.00228 * 186.66417 * 12 10 9 14 14 H 1.08004 * 120.00234 * 220.14724 * 13 12 10 15 15 C 1.39029 * 119.99924 * 40.14218 * 13 12 10 16 16 N 1.31377 * 120.00157 * 16.34435 * 15 13 12 17 17 Si 1.86803 * 119.99670 * 196.34909 * 15 13 12 18 18 H 1.48491 * 109.47363 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47240 * 120.00287 * 17 15 13 20 20 H 1.48510 * 109.46405 * 239.99652 * 17 15 13 21 21 C 1.46497 * 119.99753 * 6.65966 * 12 10 9 22 22 C 1.55232 * 110.58158 * 242.99839 * 21 12 10 23 23 C 1.54888 * 102.58904 * 203.34196 * 22 21 12 24 24 C 1.54264 * 104.31422 * 37.93203 * 23 22 21 25 25 C 1.53871 * 106.59723 * 336.32442 * 24 23 22 26 26 O 1.33969 * 125.61007 * 270.32924 * 6 5 2 27 27 H 1.09000 * 109.47173 * 305.51914 * 1 2 3 28 28 H 1.09006 * 109.47153 * 65.50932 * 1 2 3 29 29 H 1.08994 * 109.47695 * 185.51186 * 1 2 3 30 30 H 1.09003 * 109.46827 * 60.00207 * 5 2 1 31 31 H 1.09002 * 109.47452 * 300.00094 * 5 2 1 32 32 H 1.08001 * 126.43667 * 0.02562 * 7 6 5 33 33 H 1.07995 * 126.64947 * 180.02562 * 8 7 6 34 34 H 0.97004 * 120.00243 * 179.97438 * 16 15 13 35 35 H 1.08997 * 110.43617 * 5.58528 * 21 12 10 36 36 H 1.09001 * 110.90169 * 85.05001 * 22 21 12 37 37 H 1.09000 * 110.76717 * 321.57075 * 22 21 12 38 38 H 1.08999 * 110.48658 * 279.18602 * 23 22 21 39 39 H 1.09002 * 110.49066 * 156.67942 * 23 22 21 40 40 H 1.09002 * 110.03162 * 95.60856 * 24 23 22 41 41 H 1.09004 * 110.03557 * 216.99323 * 24 23 22 42 42 H 1.09000 * 110.03350 * 119.28409 * 25 24 23 43 43 H 1.09001 * 110.03528 * 240.66716 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.6826 -0.8183 1.7952 7 6 4.4632 0.1386 2.3446 8 6 5.7825 -0.3389 2.3186 9 6 5.7398 -1.5799 1.7475 10 6 6.8876 -2.4598 1.5130 11 8 7.9806 -2.1674 1.9623 12 7 6.7334 -3.5929 0.7997 13 6 7.7686 -4.4819 0.6952 14 1 7.9651 -4.9738 -0.2461 15 6 8.5675 -4.7517 1.8005 16 7 8.1571 -4.4212 3.0040 17 14 10.2245 -5.5840 1.5744 18 1 10.4513 -5.8516 0.1315 19 1 11.2985 -4.6967 2.0887 20 1 10.2406 -6.8662 2.3237 21 6 5.4575 -3.8731 0.1365 22 6 4.8091 -5.1567 0.7207 23 6 3.8801 -5.6191 -0.4292 24 6 4.6820 -5.3171 -1.7120 25 6 5.6849 -4.2070 -1.3524 26 8 4.4562 -1.8497 1.4313 27 1 -0.3633 0.5970 0.8364 28 1 -0.3634 0.4260 -0.9353 29 1 -0.3634 -1.0228 0.0987 30 1 1.7609 -1.7369 1.6664 31 1 1.7609 -0.1171 2.4043 32 1 4.1336 1.0918 2.7310 33 1 6.6611 0.1743 2.6804 34 1 8.7144 -4.6098 3.7753 35 1 4.7814 -3.0242 0.2381 36 1 4.2309 -4.9275 1.6159 37 1 5.5671 -5.9110 0.9319 38 1 2.9492 -5.0523 -0.4189 39 1 3.6764 -6.6869 -0.3492 40 1 5.2148 -6.2103 -2.0383 41 1 4.0111 -4.9743 -2.4998 42 1 6.7045 -4.5614 -1.5041 43 1 5.5014 -3.3249 -1.9659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330817276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = -65.692428 kcal Electronic energy + Delta-G solvation = -29206.759998 eV Core-core repulsion = 25154.317122 eV Total energy + Delta-G solvation = -4052.442876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 7.22 seconds Orbital eigenvalues (eV) -42.24394 -38.61890 -37.09375 -36.68566 -36.11730 -33.62497 -33.06152 -31.88425 -31.53845 -29.89783 -28.05411 -27.35752 -26.81335 -24.75995 -21.75083 -21.29427 -19.91764 -19.75153 -19.58590 -19.03325 -17.56421 -17.02234 -16.50723 -16.17224 -16.06678 -15.68420 -15.14000 -14.89215 -14.55399 -14.06401 -13.85538 -13.62770 -13.54130 -13.41926 -13.08598 -12.93401 -12.68161 -12.57609 -12.29003 -12.16398 -12.08737 -11.93564 -11.54760 -11.42425 -11.18955 -11.05835 -10.98445 -10.86856 -10.61549 -10.51705 -10.42094 -10.20563 -9.91106 -9.64502 -9.38701 -8.91540 -8.41688 -7.97540 -7.21352 -6.22371 -3.91270 -0.33896 1.76326 2.50971 2.83811 2.94580 3.27749 3.36371 3.38523 3.56785 3.77920 4.19266 4.36205 4.47785 4.52830 4.61236 4.77644 4.85564 5.13656 5.18784 5.29177 5.30822 5.34394 5.40966 5.49072 5.75730 6.01593 6.12082 6.13416 6.20323 6.22897 6.25859 6.29511 6.47878 6.50025 6.58455 6.65157 6.84607 6.93027 6.97054 7.20991 7.38020 7.55431 8.15086 8.90794 9.05905 9.50553 10.14057 10.85239 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.004225 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.895908 B = 6625.068090 C = 7844.235209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.411 3.589 3 O -0.930 6.930 4 O -0.924 6.924 5 C -0.515 4.515 6 C -0.058 4.058 7 C -0.168 4.168 8 C -0.178 4.178 9 C 0.010 3.990 10 C 0.529 3.471 11 O -0.516 6.516 12 N -0.423 5.423 13 C -0.328 4.328 14 H 0.090 0.910 15 C 0.062 3.938 16 N -0.819 5.819 17 Si 0.916 3.084 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.284 1.284 21 C 0.111 3.889 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.133 4.133 26 O -0.149 6.149 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.267 0.733 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.502 4.665 -3.311 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.592 3.408 3 O -0.927 6.927 4 O -0.921 6.921 5 C -0.641 4.641 6 C -0.110 4.110 7 C -0.189 4.189 8 C -0.199 4.199 9 C -0.044 4.044 10 C 0.317 3.683 11 O -0.395 6.395 12 N -0.141 5.141 13 C -0.455 4.455 14 H 0.107 0.893 15 C -0.149 4.149 16 N -0.453 5.453 17 Si 0.742 3.258 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.211 1.211 21 C 0.007 3.993 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.172 4.172 26 O -0.046 6.046 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.459 4.824 -3.713 17.549 hybrid contribution -0.015 -0.515 0.912 1.047 sum -16.474 4.309 -2.802 17.257 Atomic orbital electron populations 1.30331 1.27183 1.11604 1.11759 1.08545 0.78231 0.76186 0.77805 1.93601 1.78850 1.34244 1.86039 1.93634 1.78592 1.66693 1.53157 1.28772 0.96129 1.15146 1.24092 1.20886 0.90589 0.90532 1.09014 1.21540 0.93110 1.00351 1.03931 1.21765 0.97921 0.95318 1.04908 1.23651 0.81671 0.97791 1.01327 1.16393 0.84719 0.80896 0.86341 1.90700 1.23691 1.72136 1.52991 1.43254 1.10383 1.15588 1.44894 1.19102 1.08349 1.21488 0.96560 0.89294 1.25283 0.99458 0.95857 0.94339 1.69857 1.36125 1.41057 0.98213 0.86080 0.82991 0.78160 0.78520 1.19346 1.20521 1.21077 1.22513 0.87095 0.97802 0.91895 1.22757 0.98193 0.98475 0.96416 1.22303 0.98181 1.00052 0.95582 1.22024 0.97594 0.98552 0.97290 1.22433 1.00553 0.97978 0.96202 1.84335 1.17940 1.38771 1.63519 0.85351 0.85184 0.85216 0.83473 0.82975 0.82960 0.82568 0.92245 0.88392 0.92641 0.89839 0.92303 0.92365 0.92264 0.92536 0.90203 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.08 10.62 101.05 1.07 -2.01 16 2 S 2.41 24.07 5.34 -107.50 -0.57 23.50 16 3 O -0.93 -12.54 18.10 -57.83 -1.05 -13.58 16 4 O -0.92 -13.44 18.10 -57.83 -1.05 -14.49 16 5 C -0.52 -4.85 6.34 36.01 0.23 -4.63 16 6 C -0.06 -0.94 6.57 -35.40 -0.23 -1.17 16 7 C -0.17 -2.77 10.77 -39.89 -0.43 -3.20 16 8 C -0.18 -3.59 10.63 -39.36 -0.42 -4.01 16 9 C 0.01 0.23 6.77 -36.82 -0.25 -0.02 16 10 C 0.53 14.27 6.73 -12.93 -0.09 14.18 16 11 O -0.52 -15.58 14.56 5.15 0.07 -15.50 16 12 N -0.42 -10.83 2.57 -107.30 -0.28 -11.11 16 13 C -0.33 -8.79 7.86 -15.02 -0.12 -8.91 16 14 H 0.09 2.27 6.32 -52.48 -0.33 1.94 16 15 C 0.06 1.70 4.45 -17.45 -0.08 1.62 16 16 N -0.82 -23.81 11.42 55.50 0.63 -23.18 16 17 Si 0.92 21.39 29.58 -169.99 -5.03 16.36 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.11 2.38 2.94 -66.08 -0.19 2.18 16 22 C -0.12 -2.34 6.49 -24.55 -0.16 -2.50 16 23 C -0.12 -1.91 6.82 -25.07 -0.17 -2.08 16 24 C -0.12 -1.83 6.80 -25.62 -0.17 -2.01 16 25 C -0.13 -2.53 6.40 -25.61 -0.16 -2.70 16 26 O -0.15 -2.98 7.18 4.88 0.04 -2.95 16 27 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.15 1.02 8.14 -51.92 -0.42 0.59 16 31 H 0.15 0.81 8.14 -51.92 -0.42 0.38 16 32 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.16 3.03 8.06 -52.49 -0.42 2.61 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.10 2.09 4.12 -53.86 -0.22 1.87 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.80 7.43 -51.93 -0.39 1.42 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.61 5.99 -51.93 -0.31 1.30 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -38.35 366.22 -8.77 -47.12 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.88 Total: 3.54 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -1.17 Total: -15.23 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.36 Total: -34.29 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -1.98 Total: -46.52 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: 24.07 SS G_CDS: -0.57 Total: 23.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.35 -8.77 -47.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330817276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.572 kcal (2) G-P(sol) polarization free energy of solvation -38.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.23 seconds