Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99868 * 2 1 4 4 C 1.52999 * 109.46994 * 179.97438 * 3 2 1 5 5 O 1.42891 * 109.47164 * 64.99946 * 4 3 2 6 6 C 1.35907 * 117.00014 * 179.97438 * 5 4 3 7 7 C 1.38745 * 120.05169 * 0.02562 * 6 5 4 8 8 C 1.38123 * 119.94183 * 179.97438 * 7 6 5 9 9 C 1.38291 * 120.05771 * 359.97438 * 8 7 6 10 10 C 1.38251 * 120.10583 * 359.75110 * 9 8 7 11 11 C 1.38160 * 120.05670 * 0.50215 * 10 9 8 12 12 S 1.76193 * 120.02622 * 179.77222 * 11 10 9 13 13 O 1.42093 * 106.40458 * 1.18382 * 12 11 10 14 14 O 1.42107 * 106.40367 * 228.26246 * 12 11 10 15 15 N 1.65600 * 107.21793 * 114.72614 * 12 11 10 16 16 C 1.36934 * 120.00518 * 98.81611 * 15 12 11 17 17 H 1.07999 * 120.00627 * 231.65327 * 16 15 12 18 18 C 1.38820 * 119.99614 * 51.64911 * 16 15 12 19 19 N 1.31626 * 119.99497 * 202.07888 * 18 16 15 20 20 Si 1.86793 * 120.00083 * 22.08102 * 18 16 15 21 21 H 1.48491 * 109.47313 * 264.70192 * 20 18 16 22 22 H 1.48499 * 109.47174 * 24.70615 * 20 18 16 23 23 H 1.48506 * 109.47210 * 144.70229 * 20 18 16 24 24 C 1.46504 * 119.99903 * 278.81512 * 15 12 11 25 25 C 1.52999 * 117.49680 * 188.53706 * 24 15 12 26 26 C 1.53002 * 117.49871 * 119.87700 * 24 15 12 27 27 H 1.09001 * 109.46955 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47556 * 300.00190 * 1 2 3 29 29 H 1.09001 * 109.47068 * 60.00095 * 1 2 3 30 30 H 1.09001 * 109.46954 * 59.99894 * 3 2 1 31 31 H 1.08997 * 109.47022 * 300.00177 * 3 2 1 32 32 H 1.09000 * 109.46896 * 304.99594 * 4 3 2 33 33 H 1.08999 * 109.46862 * 185.00524 * 4 3 2 34 34 H 1.08006 * 120.03501 * 359.95351 * 7 6 5 35 35 H 1.08007 * 119.97225 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.94588 * 179.97438 * 9 8 7 37 37 H 1.08006 * 119.96749 * 180.25371 * 10 9 8 38 38 H 0.97007 * 119.99172 * 180.02562 * 19 18 16 39 39 H 1.08999 * 115.54885 * 334.20599 * 24 15 12 40 40 H 1.08999 * 117.50089 * 0.02562 * 25 24 15 41 41 H 1.09007 * 117.49737 * 145.02449 * 25 24 15 42 42 H 1.08991 * 117.49714 * 214.98218 * 26 24 15 43 43 H 1.09001 * 117.49408 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2200 6 6 5.3031 0.3983 -1.3811 7 6 6.1829 0.7949 -0.3842 8 6 7.5416 0.6095 -0.5500 9 6 8.0251 0.0286 -1.7081 10 6 7.1500 -0.3726 -2.7004 11 6 5.7905 -0.1845 -2.5416 12 16 4.6764 -0.6907 -3.8093 13 8 5.4713 -1.2719 -4.8336 14 8 3.7992 0.4046 -4.0334 15 7 3.7485 -1.9131 -3.1870 16 6 2.4921 -1.6456 -2.7126 17 1 2.2074 -1.9726 -1.7235 18 6 1.5845 -0.9540 -3.5032 19 7 0.5742 -0.3212 -2.9451 20 14 1.7967 -0.9216 -5.3587 21 1 2.5276 0.3097 -5.7519 22 1 2.5691 -2.1146 -5.7895 23 1 0.4622 -0.9344 -6.0100 24 6 4.2718 -3.2808 -3.1441 25 6 3.3025 -4.3959 -2.7469 26 6 4.3946 -3.9475 -1.7725 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8507 0.5686 0.8427 33 1 3.9784 2.1766 0.0903 34 1 5.8059 1.2486 0.5205 35 1 8.2269 0.9184 0.2254 36 1 9.0878 -0.1152 -1.8361 37 1 7.5298 -0.8298 -3.6022 38 1 -0.0603 0.1618 -3.4976 39 1 5.0326 -3.5166 -3.8883 40 1 2.2753 -4.1120 -2.5179 41 1 3.4258 -5.3655 -3.2294 42 1 5.2359 -4.6221 -1.6144 43 1 4.0864 -3.3683 -0.9021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357777568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = -69.242592 kcal Electronic energy + Delta-G solvation = -30514.273235 eV Core-core repulsion = 26461.676412 eV Total energy + Delta-G solvation = -4052.596823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 6.46 seconds Orbital eigenvalues (eV) -39.65160 -37.39440 -37.19027 -36.40782 -35.67387 -34.38096 -33.15421 -31.05636 -31.00765 -30.30442 -28.79603 -25.51234 -24.65283 -23.30736 -22.37597 -21.57263 -21.13030 -20.40398 -18.94191 -18.32916 -17.17206 -16.18780 -16.06990 -15.97114 -15.56420 -15.15066 -14.87978 -14.55938 -14.29841 -14.17455 -14.13306 -13.85671 -13.59595 -13.23141 -12.79950 -12.59636 -12.35522 -11.86958 -11.73378 -11.53031 -11.37481 -11.29098 -11.13024 -10.88744 -10.77620 -10.70971 -10.65560 -10.49563 -10.28667 -10.21839 -10.07265 -9.83515 -9.47735 -9.13678 -8.83589 -8.75416 -8.56017 -7.85383 -7.55676 -6.41069 -4.00099 1.37747 1.81283 1.86905 3.36469 3.52704 3.63675 3.65532 3.93963 4.31259 4.45834 4.50607 4.68813 5.01536 5.05202 5.11002 5.16391 5.32563 5.44966 5.49426 5.61041 5.67489 5.70885 5.75448 5.76791 5.82566 5.99878 6.04222 6.06381 6.17490 6.28601 6.31975 6.34376 6.45269 6.56638 6.63401 6.72572 6.75955 6.79457 7.02007 7.15835 7.27523 7.83194 7.85691 8.02387 8.39482 9.10059 9.24781 10.57259 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.008168 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.003675 B = 3427.149725 C = 4660.226335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.354 6.354 3 C 0.072 3.928 4 C 0.063 3.937 5 O -0.258 6.258 6 C 0.227 3.773 7 C -0.242 4.242 8 C -0.050 4.050 9 C -0.193 4.193 10 C -0.002 4.002 11 C -0.687 4.687 12 S 2.515 3.485 13 O -1.013 7.013 14 O -0.946 6.946 15 N -0.800 5.800 16 C -0.223 4.223 17 H 0.100 0.900 18 C 0.108 3.892 19 N -0.797 5.797 20 Si 0.831 3.169 21 H -0.238 1.238 22 H -0.258 1.258 23 H -0.286 1.286 24 C 0.091 3.909 25 C -0.164 4.164 26 C -0.204 4.204 27 H 0.074 0.926 28 H 0.006 0.994 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.274 0.726 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 0.325 8.100 9.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.272 6.272 3 C -0.005 4.005 4 C -0.012 4.012 5 O -0.168 6.168 6 C 0.178 3.822 7 C -0.261 4.261 8 C -0.068 4.068 9 C -0.212 4.212 10 C -0.021 4.021 11 C -0.766 4.766 12 S 2.620 3.380 13 O -1.003 7.003 14 O -0.935 6.935 15 N -0.621 5.621 16 C -0.374 4.374 17 H 0.117 0.883 18 C -0.110 4.110 19 N -0.433 5.433 20 Si 0.656 3.344 21 H -0.162 1.162 22 H -0.182 1.182 23 H -0.213 1.213 24 C -0.017 4.017 25 C -0.203 4.203 26 C -0.244 4.244 27 H 0.093 0.907 28 H 0.025 0.975 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.533 0.727 7.065 8.426 hybrid contribution 0.465 0.747 0.141 0.891 sum 4.999 1.473 7.206 8.893 Atomic orbital electron populations 1.22506 0.81206 1.02080 0.98359 1.87979 1.19546 1.24644 1.94990 1.22258 0.90535 0.87547 1.00161 1.22836 0.95227 0.96865 0.86283 1.86585 1.17721 1.74463 1.38064 1.18457 0.83504 0.88571 0.91653 1.21270 0.94465 1.09906 1.00452 1.20978 0.94546 0.94744 0.96533 1.21043 0.99443 1.05193 0.95524 1.20781 0.90958 0.92440 0.97888 1.31215 1.10932 1.16212 1.18260 1.11966 0.72651 0.75669 0.77739 1.93305 1.71433 1.77656 1.57885 1.93450 1.62393 1.53214 1.84449 1.52650 1.20383 1.12190 1.76854 1.18782 0.83155 1.34146 1.01290 0.88271 1.25597 0.93945 0.92724 0.98743 1.69822 1.13097 1.23854 1.36538 0.87525 0.79134 0.81268 0.86493 1.16240 1.18225 1.21340 1.21407 1.00553 0.82912 0.96875 1.23151 0.97574 0.96886 1.02676 1.23296 1.00975 1.04501 0.95665 0.90719 0.97542 0.91981 0.93196 0.91762 0.91835 0.91666 0.85652 0.86225 0.86159 0.84670 0.91614 0.86398 0.86936 0.89729 0.89881 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 10.29 101.05 1.04 1.99 16 2 O -0.35 -6.95 10.67 -40.09 -0.43 -7.37 16 3 C 0.07 1.23 6.32 37.16 0.23 1.47 16 4 C 0.06 1.06 5.12 37.16 0.19 1.25 16 5 O -0.26 -5.58 8.07 -37.35 -0.30 -5.88 16 6 C 0.23 4.71 6.63 -39.22 -0.26 4.45 16 7 C -0.24 -4.06 9.04 -39.44 -0.36 -4.42 16 8 C -0.05 -0.75 10.04 -39.60 -0.40 -1.14 16 9 C -0.19 -3.08 10.04 -39.56 -0.40 -3.48 16 10 C 0.00 -0.03 9.55 -39.61 -0.38 -0.41 16 11 C -0.69 -15.24 5.92 -39.44 -0.23 -15.47 16 12 S 2.51 64.03 3.88 -107.50 -0.42 63.61 16 13 O -1.01 -26.76 15.98 -57.17 -0.91 -27.68 16 14 O -0.95 -26.62 11.69 -62.48 -0.73 -27.35 16 15 N -0.80 -19.15 2.49 -53.42 -0.13 -19.28 16 16 C -0.22 -5.53 7.16 -15.06 -0.11 -5.64 16 17 H 0.10 2.56 7.97 -52.49 -0.42 2.14 16 18 C 0.11 2.79 4.57 -17.42 -0.08 2.71 16 19 N -0.80 -19.87 12.02 55.49 0.67 -19.20 16 20 Si 0.83 21.63 25.11 -169.99 -4.27 17.36 16 21 H -0.24 -6.65 6.09 56.52 0.34 -6.31 16 22 H -0.26 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 C 0.09 1.88 6.41 -67.93 -0.44 1.44 16 25 C -0.16 -2.90 9.85 -26.69 -0.26 -3.17 16 26 C -0.20 -3.58 10.28 -26.69 -0.27 -3.85 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.06 1.16 6.93 -51.93 -0.36 0.80 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.96 7.66 -51.93 -0.40 0.57 16 33 H 0.07 0.91 7.66 -51.93 -0.40 0.51 16 34 H 0.13 1.73 6.30 -52.48 -0.33 1.40 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.14 2.50 7.33 -52.48 -0.38 2.12 16 38 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 39 H 0.12 2.34 7.51 -51.93 -0.39 1.96 16 40 H 0.11 2.14 7.05 -51.93 -0.37 1.78 16 41 H 0.08 1.27 8.14 -51.92 -0.42 0.84 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -30.95 361.27 -8.84 -39.79 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.04 Total: 4.82 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -1.72 Total: -24.27 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.53 Total: -38.48 kcal Atomic # 8 Polarization: -65.91 SS G_CDS: -2.37 Total: -68.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.27 Total: 17.36 kcal Atomic # 16 Polarization: 64.03 SS G_CDS: -0.42 Total: 63.61 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.95 -8.84 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357777568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.455 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.46 seconds