Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99868 * 2 1 4 4 C 1.52999 * 109.46994 * 179.97438 * 3 2 1 5 5 O 1.42891 * 109.47164 * 64.99946 * 4 3 2 6 6 C 1.35907 * 117.00014 * 179.97438 * 5 4 3 7 7 C 1.38745 * 120.05169 * 0.02562 * 6 5 4 8 8 C 1.38123 * 119.94183 * 179.97438 * 7 6 5 9 9 C 1.38291 * 120.05771 * 359.97438 * 8 7 6 10 10 C 1.38251 * 120.10583 * 359.75110 * 9 8 7 11 11 C 1.38160 * 120.05670 * 0.50215 * 10 9 8 12 12 S 1.76193 * 120.02622 * 179.77222 * 11 10 9 13 13 O 1.42093 * 106.40458 * 1.18382 * 12 11 10 14 14 O 1.42107 * 106.40367 * 228.26246 * 12 11 10 15 15 N 1.65600 * 107.21793 * 114.72614 * 12 11 10 16 16 C 1.36934 * 120.00518 * 98.81611 * 15 12 11 17 17 H 1.07999 * 120.00627 * 231.65327 * 16 15 12 18 18 C 1.38820 * 119.99614 * 51.64911 * 16 15 12 19 19 N 1.31626 * 119.99497 * 202.07888 * 18 16 15 20 20 Si 1.86793 * 120.00083 * 22.08102 * 18 16 15 21 21 H 1.48491 * 109.47313 * 264.70192 * 20 18 16 22 22 H 1.48499 * 109.47174 * 24.70615 * 20 18 16 23 23 H 1.48506 * 109.47210 * 144.70229 * 20 18 16 24 24 C 1.46504 * 119.99903 * 278.81512 * 15 12 11 25 25 C 1.52999 * 117.49680 * 188.53706 * 24 15 12 26 26 C 1.53002 * 117.49871 * 119.87700 * 24 15 12 27 27 H 1.09001 * 109.46955 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47556 * 300.00190 * 1 2 3 29 29 H 1.09001 * 109.47068 * 60.00095 * 1 2 3 30 30 H 1.09001 * 109.46954 * 59.99894 * 3 2 1 31 31 H 1.08997 * 109.47022 * 300.00177 * 3 2 1 32 32 H 1.09000 * 109.46896 * 304.99594 * 4 3 2 33 33 H 1.08999 * 109.46862 * 185.00524 * 4 3 2 34 34 H 1.08006 * 120.03501 * 359.95351 * 7 6 5 35 35 H 1.08007 * 119.97225 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.94588 * 179.97438 * 9 8 7 37 37 H 1.08006 * 119.96749 * 180.25371 * 10 9 8 38 38 H 0.97007 * 119.99172 * 180.02562 * 19 18 16 39 39 H 1.08999 * 115.54885 * 334.20599 * 24 15 12 40 40 H 1.08999 * 117.50089 * 0.02562 * 25 24 15 41 41 H 1.09007 * 117.49737 * 145.02449 * 25 24 15 42 42 H 1.08991 * 117.49714 * 214.98218 * 26 24 15 43 43 H 1.09001 * 117.49408 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2200 6 6 5.3031 0.3983 -1.3811 7 6 6.1829 0.7949 -0.3842 8 6 7.5416 0.6095 -0.5500 9 6 8.0251 0.0286 -1.7081 10 6 7.1500 -0.3726 -2.7004 11 6 5.7905 -0.1845 -2.5416 12 16 4.6764 -0.6907 -3.8093 13 8 5.4713 -1.2719 -4.8336 14 8 3.7992 0.4046 -4.0334 15 7 3.7485 -1.9131 -3.1870 16 6 2.4921 -1.6456 -2.7126 17 1 2.2074 -1.9726 -1.7235 18 6 1.5845 -0.9540 -3.5032 19 7 0.5742 -0.3212 -2.9451 20 14 1.7967 -0.9216 -5.3587 21 1 2.5276 0.3097 -5.7519 22 1 2.5691 -2.1146 -5.7895 23 1 0.4622 -0.9344 -6.0100 24 6 4.2718 -3.2808 -3.1441 25 6 3.3025 -4.3959 -2.7469 26 6 4.3946 -3.9475 -1.7725 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8507 0.5686 0.8427 33 1 3.9784 2.1766 0.0903 34 1 5.8059 1.2486 0.5205 35 1 8.2269 0.9184 0.2254 36 1 9.0878 -0.1152 -1.8361 37 1 7.5298 -0.8298 -3.6022 38 1 -0.0603 0.1618 -3.4976 39 1 5.0326 -3.5166 -3.8883 40 1 2.2753 -4.1120 -2.5179 41 1 3.4258 -5.3655 -3.2294 42 1 5.2359 -4.6221 -1.6144 43 1 4.0864 -3.3683 -0.9021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357777568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = -90.404401 kcal Electronic energy + Delta-G solvation = -30515.190880 eV Core-core repulsion = 26461.676412 eV Total energy + Delta-G solvation = -4053.514468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.04916 -38.85166 -38.73770 -37.94984 -37.57080 -36.43420 -34.98937 -32.87381 -32.38709 -31.64529 -30.16103 -26.89500 -26.50943 -24.66415 -23.79935 -22.99364 -22.48940 -22.06156 -20.85421 -19.86873 -18.84174 -17.82133 -17.73070 -17.51207 -17.06626 -16.98072 -16.25733 -16.15767 -15.88468 -15.62023 -15.55499 -15.43174 -15.13714 -15.02377 -14.74562 -14.01057 -13.71147 -13.57282 -13.42356 -13.17522 -12.99351 -12.94038 -12.72787 -12.54709 -12.46520 -12.33039 -12.18397 -12.10660 -12.05731 -11.89520 -11.60851 -11.56570 -11.13378 -10.88686 -10.55671 -10.24222 -10.15110 -9.33387 -9.22065 -8.39165 -5.94624 -0.13328 0.08986 0.46449 1.23755 1.38668 1.52074 2.26545 2.35873 2.47399 2.72486 3.03283 3.12477 3.18882 3.30971 3.73458 3.88894 4.03952 4.15252 4.19825 4.23813 4.27373 4.31943 4.38093 4.45739 4.46919 4.50852 4.68848 4.74576 4.77378 4.84531 4.93521 4.97803 5.07207 5.21552 5.26473 5.28906 5.37134 5.42253 5.53511 5.61504 5.86421 6.02954 6.38433 6.48283 6.68742 7.14435 7.36220 8.61261 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.008168 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.003675 B = 3427.149725 C = 4660.226335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.382 6.382 3 C 0.070 3.930 4 C 0.055 3.945 5 O -0.297 6.297 6 C 0.205 3.795 7 C -0.238 4.238 8 C -0.032 4.032 9 C -0.183 4.183 10 C -0.021 4.021 11 C -0.721 4.721 12 S 2.522 3.478 13 O -1.036 7.036 14 O -0.985 6.985 15 N -0.809 5.809 16 C -0.210 4.210 17 H 0.088 0.912 18 C 0.091 3.909 19 N -0.802 5.802 20 Si 0.835 3.165 21 H -0.274 1.274 22 H -0.264 1.264 23 H -0.269 1.269 24 C 0.051 3.949 25 C -0.151 4.151 26 C -0.178 4.178 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.093 0.907 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.131 0.869 38 H 0.274 0.726 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 0.150 11.356 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.300 6.300 3 C -0.007 4.007 4 C -0.020 4.020 5 O -0.208 6.208 6 C 0.156 3.844 7 C -0.257 4.257 8 C -0.050 4.050 9 C -0.202 4.202 10 C -0.041 4.041 11 C -0.806 4.806 12 S 2.631 3.369 13 O -1.026 7.026 14 O -0.974 6.974 15 N -0.631 5.631 16 C -0.359 4.359 17 H 0.106 0.894 18 C -0.125 4.125 19 N -0.438 5.438 20 Si 0.661 3.339 21 H -0.200 1.200 22 H -0.188 1.188 23 H -0.195 1.195 24 C -0.057 4.057 25 C -0.190 4.190 26 C -0.218 4.218 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.177 0.823 35 H 0.190 0.810 36 H 0.178 0.822 37 H 0.148 0.852 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.893 0.506 10.291 12.397 hybrid contribution -0.045 0.877 -0.770 1.168 sum 6.848 1.383 9.521 11.809 Atomic orbital electron populations 1.22459 0.80501 1.01857 0.98928 1.87930 1.20536 1.26391 1.95166 1.22426 0.91003 0.86608 1.00629 1.23175 0.94924 0.98545 0.85323 1.86538 1.18624 1.75268 1.40400 1.18723 0.83941 0.89388 0.92310 1.21685 0.94840 1.08856 1.00338 1.21618 0.94512 0.91929 0.96920 1.21496 1.00865 1.03305 0.94521 1.20943 0.90441 0.93467 0.99204 1.30614 1.11521 1.20158 1.18294 1.10715 0.72896 0.75360 0.77919 1.93262 1.71923 1.78116 1.59348 1.93396 1.63938 1.54552 1.85547 1.52522 1.20142 1.13193 1.77275 1.18422 0.83342 1.33975 1.00207 0.89438 1.25739 0.94769 0.93758 0.98269 1.69842 1.13367 1.24642 1.35981 0.87479 0.79264 0.79238 0.87898 1.20041 1.18809 1.19499 1.21703 1.02531 0.82042 0.99444 1.23219 0.96471 0.97090 1.02237 1.23281 1.01656 1.03440 0.93403 0.91374 0.94125 0.94137 0.88908 0.94880 0.89971 0.88687 0.82328 0.81013 0.82184 0.85162 0.91603 0.86367 0.88607 0.86385 0.86488 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.04 10.29 113.37 1.17 3.21 16 2 O -0.38 -14.98 10.67 -144.33 -1.54 -16.52 16 3 C 0.07 2.34 6.32 71.98 0.45 2.79 16 4 C 0.05 1.74 5.12 71.98 0.37 2.10 16 5 O -0.30 -12.84 8.07 -75.39 -0.61 -13.44 16 6 C 0.21 8.28 6.63 22.50 0.15 8.43 16 7 C -0.24 -7.04 9.04 22.36 0.20 -6.84 16 8 C -0.03 -0.78 10.04 22.26 0.22 -0.56 16 9 C -0.18 -5.06 10.04 22.29 0.22 -4.84 16 10 C -0.02 -0.80 9.55 22.25 0.21 -0.59 16 11 C -0.72 -32.04 5.92 22.36 0.13 -31.91 16 12 S 2.52 133.47 3.88 -56.49 -0.22 133.25 16 13 O -1.04 -57.12 15.98 -128.00 -2.04 -59.16 16 14 O -0.99 -58.53 11.69 -122.92 -1.44 -59.96 16 15 N -0.81 -39.93 2.49 -322.93 -0.80 -40.73 16 16 C -0.21 -10.83 7.16 84.04 0.60 -10.22 16 17 H 0.09 4.69 7.97 -2.91 -0.02 4.67 16 18 C 0.09 4.90 4.57 84.86 0.39 5.29 16 19 N -0.80 -41.66 12.02 21.65 0.26 -41.40 16 20 Si 0.83 45.50 25.11 68.60 1.72 47.22 16 21 H -0.27 -16.44 6.09 99.48 0.61 -15.84 16 22 H -0.26 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 24 C 0.05 2.09 6.41 44.99 0.29 2.38 16 25 C -0.15 -5.22 9.85 30.62 0.30 -4.91 16 26 C -0.18 -5.97 10.28 30.62 0.31 -5.66 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 1.55 6.93 -2.39 -0.02 1.54 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.25 7.66 -2.39 -0.02 2.23 16 33 H 0.10 2.37 7.66 -2.39 -0.02 2.35 16 34 H 0.16 3.54 6.30 -2.91 -0.02 3.52 16 35 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.13 4.83 7.33 -2.91 -0.02 4.81 16 38 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 39 H 0.12 4.77 7.51 -2.39 -0.02 4.76 16 40 H 0.10 3.66 7.05 -2.39 -0.02 3.65 16 41 H 0.12 3.25 8.14 -2.38 -0.02 3.23 16 42 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -73.46 361.27 1.27 -72.18 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.92 Total: 19.89 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 5.03 Total: -41.32 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -0.54 Total: -82.14 kcal Atomic # 8 Polarization: -143.46 SS G_CDS: -5.63 Total: -149.09 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.72 Total: 47.22 kcal Atomic # 16 Polarization: 133.47 SS G_CDS: -0.22 Total: 133.25 kcal Total: -73.46 1.27 -72.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357777568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.221 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds