Wall clock time and date at job start Sat Apr 11 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00261 * 2 1 4 4 O 1.20829 * 120.00057 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99922 * 179.97438 * 3 2 1 6 6 C 1.52994 * 110.29190 * 299.33345 * 5 3 2 7 7 F 1.39892 * 109.47288 * 180.67408 * 6 5 3 8 8 F 1.39907 * 109.46870 * 300.67054 * 6 5 3 9 9 F 1.39900 * 109.47415 * 60.66791 * 6 5 3 10 10 C 1.54266 * 110.31951 * 61.45590 * 5 3 2 11 11 C 1.54387 * 105.05764 * 118.89292 * 10 5 3 12 12 N 1.48554 * 104.59532 * 336.14878 * 11 10 5 13 13 C 1.46901 * 111.00058 * 159.03917 * 12 11 10 14 14 C 1.52999 * 109.47208 * 69.87378 * 13 12 11 15 15 C 1.52998 * 109.47133 * 180.02562 * 14 13 12 16 16 S 1.81001 * 109.47084 * 179.97438 * 15 14 13 17 17 C 1.76201 * 99.99894 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99766 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00034 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46807 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46906 * 300.00462 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.48561 * 104.22605 * 39.47999 * 12 11 10 26 26 H 1.09003 * 109.47001 * 59.99566 * 1 2 3 27 27 H 1.08993 * 109.47642 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46904 * 300.00028 * 1 2 3 29 29 H 1.08995 * 110.32694 * 0.02562 * 10 5 3 30 30 H 1.08999 * 110.41074 * 237.82995 * 10 5 3 31 31 H 1.08997 * 110.41441 * 217.36489 * 11 10 5 32 32 H 1.09002 * 110.40811 * 94.92798 * 11 10 5 33 33 H 1.09003 * 109.46908 * 309.86992 * 13 12 11 34 34 H 1.09003 * 109.47229 * 189.87160 * 13 12 11 35 35 H 1.09001 * 109.47004 * 59.99820 * 14 13 12 36 36 H 1.09003 * 109.46848 * 300.00015 * 14 13 12 37 37 H 1.09001 * 109.47517 * 59.99895 * 15 14 13 38 38 H 1.09003 * 109.47071 * 299.99640 * 15 14 13 39 39 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 40 40 H 1.09006 * 110.41009 * 79.29282 * 25 12 11 41 41 H 1.08999 * 110.41249 * 201.73927 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1325 0.6007 1.2519 7 9 5.5281 0.6971 1.2427 8 9 3.6288 1.2360 2.3921 9 9 3.7582 -0.7472 1.2655 10 6 4.1380 0.6122 -1.2699 11 6 4.8952 1.7395 -2.0042 12 7 4.2627 2.9931 -1.5188 13 6 5.1540 4.1437 -1.7178 14 6 5.2684 4.4477 -3.2129 15 6 6.1972 5.6457 -3.4202 16 16 6.3330 6.0049 -5.1890 17 6 7.4266 7.3855 -5.1377 18 1 7.7925 7.7496 -4.1892 19 6 7.8178 8.0051 -6.3166 20 7 7.3714 7.5616 -7.4728 21 14 8.9767 9.4692 -6.2622 22 1 9.2384 9.9449 -7.6444 23 1 8.3565 10.5622 -5.4710 24 1 10.2568 9.0640 -5.6281 25 6 4.0262 2.7466 -0.0730 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 3.3301 0.2304 -1.8940 30 1 4.8230 -0.1928 -1.0035 31 1 4.7688 1.6427 -3.0825 32 1 5.9529 1.7209 -1.7414 33 1 6.1411 3.9121 -1.3175 34 1 4.7469 5.0125 -1.2005 35 1 4.2812 4.6793 -3.6131 36 1 5.6755 3.5790 -3.7302 37 1 7.1842 5.4138 -3.0201 38 1 5.7904 6.5147 -2.9028 39 1 7.6445 7.9949 -8.2965 40 1 4.9480 2.8855 0.4921 41 1 3.2456 3.4080 0.3027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375787298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:29 Heat of formation + Delta-G solvation = -236.099692 kcal Electronic energy + Delta-G solvation = -28182.508142 eV Core-core repulsion = 23580.819112 eV Total energy + Delta-G solvation = -4601.689030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.106 amu Computer time = 6.85 seconds Orbital eigenvalues (eV) -50.64859 -48.12615 -48.06908 -41.31799 -39.17881 -36.91829 -34.88959 -32.43424 -31.79992 -29.98586 -28.24738 -26.53366 -25.56620 -24.83512 -23.41924 -22.29450 -20.77318 -20.59260 -19.30193 -18.77986 -18.64531 -17.47690 -17.44095 -17.09434 -16.53064 -15.61474 -15.17472 -14.99721 -14.93213 -14.86957 -14.79843 -14.49644 -14.32758 -14.24997 -14.14806 -14.07018 -13.74961 -13.59200 -13.30261 -12.83327 -12.55054 -12.49796 -12.26048 -12.19652 -11.70961 -11.65967 -11.54155 -11.29020 -11.23253 -11.04292 -10.90786 -10.81544 -10.63906 -10.35818 -9.55608 -9.04755 -8.75202 -8.30556 -6.52469 -6.22295 -3.92594 1.41741 1.93334 2.20773 3.09425 3.15926 3.22909 3.23592 3.28194 3.47375 3.53204 3.84800 3.98205 4.02600 4.22154 4.23656 4.68822 4.70500 4.73821 4.80345 4.96156 5.05764 5.13509 5.13749 5.22689 5.28647 5.39494 5.44759 5.55732 5.63530 5.67762 5.82311 5.84405 6.02304 6.26718 6.47907 6.58515 6.69360 6.83999 7.15865 7.60690 8.36830 9.23883 10.85827 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.002141 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.179068 B =13076.322528 C =13564.601613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.349 6.349 3 C 0.480 3.520 4 O -0.466 6.466 5 C -0.108 4.108 6 C 0.469 3.531 7 F -0.169 7.169 8 F -0.175 7.175 9 F -0.165 7.165 10 C -0.108 4.108 11 C 0.027 3.973 12 N -0.500 5.500 13 C 0.049 3.951 14 C -0.091 4.091 15 C -0.113 4.113 16 S -0.131 6.131 17 C -0.517 4.517 18 H 0.072 0.928 19 C 0.071 3.929 20 N -0.870 5.870 21 Si 0.918 3.082 22 H -0.283 1.283 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.047 3.953 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 -19.042 18.414 28.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.319 3.681 4 O -0.350 6.350 5 C -0.111 4.111 6 C 0.414 3.586 7 F -0.150 7.150 8 F -0.156 7.156 9 F -0.147 7.147 10 C -0.146 4.146 11 C -0.100 4.100 12 N -0.223 5.223 13 C -0.080 4.080 14 C -0.130 4.130 15 C -0.262 4.262 16 S 0.097 5.903 17 C -0.665 4.665 18 H 0.090 0.910 19 C -0.138 4.138 20 N -0.506 5.506 21 Si 0.744 3.256 22 H -0.208 1.208 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.081 4.081 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.560 -19.095 17.047 28.087 hybrid contribution 1.980 1.313 1.726 2.937 sum -9.580 -17.782 18.774 27.576 Atomic orbital electron populations 1.23390 0.75177 1.04207 1.03033 1.86516 1.24179 1.32001 1.83833 1.22280 0.89707 0.82303 0.73789 1.90724 1.65622 1.35997 1.42686 1.22575 0.91260 1.01428 0.95856 1.19858 0.76530 0.77557 0.84643 1.93224 1.29239 1.95917 1.96606 1.93237 1.87074 1.81808 1.53530 1.93256 1.91049 1.33729 1.96634 1.22493 1.01372 0.98624 0.92117 1.23297 0.96948 0.88116 1.01669 1.65515 1.42910 1.03384 1.10532 1.22418 0.94014 0.92831 0.98771 1.21224 1.00599 0.97819 0.93377 1.23232 1.00515 0.99258 1.03244 1.84629 1.63499 1.41982 1.00187 1.22649 1.32075 1.16257 0.95523 0.91025 1.25016 0.96455 0.97676 0.94640 1.70014 1.42755 1.40245 0.97539 0.86226 0.80507 0.81466 0.77352 1.20820 1.19926 1.19961 1.23223 1.02268 0.90038 0.92585 0.91289 0.87574 0.91589 0.88314 0.88686 0.88083 0.92249 0.94061 0.90198 0.90580 0.91604 0.92300 0.92056 0.92255 0.91231 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.21 9.62 -39.25 -0.38 -3.58 16 3 C 0.48 5.16 6.12 36.01 0.22 5.38 16 4 O -0.47 -6.12 15.16 -18.75 -0.28 -6.41 16 5 C -0.11 -1.04 0.51 -154.28 -0.08 -1.12 16 6 C 0.47 4.38 2.06 37.15 0.08 4.46 16 7 F -0.17 -1.56 16.05 2.25 0.04 -1.53 16 8 F -0.18 -1.76 16.86 2.25 0.04 -1.72 16 9 F -0.17 -1.53 16.02 2.25 0.04 -1.50 16 10 C -0.11 -0.89 5.90 -25.34 -0.15 -1.04 16 11 C 0.03 0.27 5.74 -2.18 -0.01 0.25 16 12 N -0.50 -5.85 5.37 -229.97 -1.24 -7.09 16 13 C 0.05 0.62 4.81 -3.82 -0.02 0.60 16 14 C -0.09 -1.45 5.27 -26.73 -0.14 -1.59 16 15 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 16 S -0.13 -3.42 21.44 -107.50 -2.30 -5.72 16 17 C -0.52 -14.81 9.50 30.94 0.29 -14.52 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 20 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 21 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.05 0.49 5.17 -2.18 -0.01 0.48 16 26 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.41 8.13 -51.92 -0.42 -0.01 16 29 H 0.10 0.76 7.69 -51.93 -0.40 0.37 16 30 H 0.09 0.64 7.40 -51.93 -0.38 0.25 16 31 H 0.10 0.98 7.76 -51.93 -0.40 0.58 16 32 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 33 H 0.04 0.50 7.88 -51.93 -0.41 0.09 16 34 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.03 7.26 -51.93 -0.38 0.65 16 37 H 0.06 1.15 8.14 -51.91 -0.42 0.72 16 38 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.07 0.66 7.13 -51.93 -0.37 0.29 16 41 H 0.12 1.31 6.85 -51.93 -0.36 0.95 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -32.53 364.30 -7.14 -39.67 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -5.61 Total: -2.94 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 1.36 Total: -5.90 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: -0.50 Total: -32.36 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.66 Total: -9.99 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.11 Total: -4.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.30 Total: -5.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.53 -7.14 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375787298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.434 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.85 seconds