Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00261 * 2 1 4 4 O 1.20829 * 120.00057 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99922 * 179.97438 * 3 2 1 6 6 C 1.52994 * 110.29190 * 299.33345 * 5 3 2 7 7 F 1.39892 * 109.47288 * 180.67408 * 6 5 3 8 8 F 1.39907 * 109.46870 * 300.67054 * 6 5 3 9 9 F 1.39900 * 109.47415 * 60.66791 * 6 5 3 10 10 C 1.54266 * 110.31951 * 61.45590 * 5 3 2 11 11 C 1.54387 * 105.05764 * 118.89292 * 10 5 3 12 12 N 1.48554 * 104.59532 * 336.14878 * 11 10 5 13 13 C 1.46901 * 111.00058 * 159.03917 * 12 11 10 14 14 C 1.52999 * 109.47208 * 69.87378 * 13 12 11 15 15 C 1.52998 * 109.47133 * 180.02562 * 14 13 12 16 16 S 1.81001 * 109.47084 * 179.97438 * 15 14 13 17 17 C 1.76201 * 99.99894 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99766 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00034 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46807 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46906 * 300.00462 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.48561 * 104.22605 * 39.47999 * 12 11 10 26 26 H 1.09003 * 109.47001 * 59.99566 * 1 2 3 27 27 H 1.08993 * 109.47642 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46904 * 300.00028 * 1 2 3 29 29 H 1.08995 * 110.32694 * 0.02562 * 10 5 3 30 30 H 1.08999 * 110.41074 * 237.82995 * 10 5 3 31 31 H 1.08997 * 110.41441 * 217.36489 * 11 10 5 32 32 H 1.09002 * 110.40811 * 94.92798 * 11 10 5 33 33 H 1.09003 * 109.46908 * 309.86992 * 13 12 11 34 34 H 1.09003 * 109.47229 * 189.87160 * 13 12 11 35 35 H 1.09001 * 109.47004 * 59.99820 * 14 13 12 36 36 H 1.09003 * 109.46848 * 300.00015 * 14 13 12 37 37 H 1.09001 * 109.47517 * 59.99895 * 15 14 13 38 38 H 1.09003 * 109.47071 * 299.99640 * 15 14 13 39 39 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 40 40 H 1.09006 * 110.41009 * 79.29282 * 25 12 11 41 41 H 1.08999 * 110.41249 * 201.73927 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1325 0.6007 1.2519 7 9 5.5281 0.6971 1.2427 8 9 3.6288 1.2360 2.3921 9 9 3.7582 -0.7472 1.2655 10 6 4.1380 0.6122 -1.2699 11 6 4.8952 1.7395 -2.0042 12 7 4.2627 2.9931 -1.5188 13 6 5.1540 4.1437 -1.7178 14 6 5.2684 4.4477 -3.2129 15 6 6.1972 5.6457 -3.4202 16 16 6.3330 6.0049 -5.1890 17 6 7.4266 7.3855 -5.1377 18 1 7.7925 7.7496 -4.1892 19 6 7.8178 8.0051 -6.3166 20 7 7.3714 7.5616 -7.4728 21 14 8.9767 9.4692 -6.2622 22 1 9.2384 9.9449 -7.6444 23 1 8.3565 10.5622 -5.4710 24 1 10.2568 9.0640 -5.6281 25 6 4.0262 2.7466 -0.0730 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 3.3301 0.2304 -1.8940 30 1 4.8230 -0.1928 -1.0035 31 1 4.7688 1.6427 -3.0825 32 1 5.9529 1.7209 -1.7414 33 1 6.1411 3.9121 -1.3175 34 1 4.7469 5.0125 -1.2005 35 1 4.2812 4.6793 -3.6131 36 1 5.6755 3.5790 -3.7302 37 1 7.1842 5.4138 -3.0201 38 1 5.7904 6.5147 -2.9028 39 1 7.6445 7.9949 -8.2965 40 1 4.9480 2.8855 0.4921 41 1 3.2456 3.4080 0.3027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375787298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = -256.121581 kcal Electronic energy + Delta-G solvation = -28183.376357 eV Core-core repulsion = 23580.819112 eV Total energy + Delta-G solvation = -4602.557244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.106 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.38732 -48.87179 -48.79971 -42.11168 -40.00000 -37.72181 -35.96407 -34.59378 -32.92216 -30.75285 -28.86765 -27.94790 -27.28824 -25.76770 -24.22271 -23.36200 -21.79587 -21.42434 -20.05359 -19.57700 -19.48504 -19.39461 -18.22755 -17.90083 -17.28299 -16.88558 -16.65631 -16.23959 -16.02382 -15.71056 -15.64905 -15.56389 -15.24923 -15.17569 -14.99458 -14.90929 -14.76749 -14.52096 -14.42747 -14.02301 -13.59132 -13.37658 -13.25221 -13.14612 -12.96186 -12.91177 -12.88236 -12.61483 -12.43301 -12.31613 -12.28070 -11.92247 -11.71716 -11.61363 -11.37822 -11.12361 -10.30685 -9.62417 -8.65223 -8.36357 -6.12343 0.62152 1.22979 1.31899 1.41303 1.45036 1.48219 1.75216 2.29011 2.35612 2.41942 2.74949 2.92664 2.97797 3.23841 3.27762 3.34434 3.52684 3.94915 3.98114 4.04049 4.14906 4.23458 4.28112 4.30338 4.35307 4.46698 4.53872 4.59747 4.69174 4.72889 4.79243 4.82420 4.91039 5.11141 5.16700 5.30512 5.40500 5.64362 5.83411 6.18870 6.38387 7.05828 8.72764 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.002141 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.179068 B =13076.322528 C =13564.601613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.480 3.520 4 O -0.497 6.497 5 C -0.107 4.107 6 C 0.474 3.526 7 F -0.166 7.166 8 F -0.180 7.180 9 F -0.163 7.163 10 C -0.102 4.102 11 C 0.024 3.976 12 N -0.515 5.515 13 C 0.059 3.941 14 C -0.079 4.079 15 C -0.088 4.088 16 S -0.198 6.198 17 C -0.538 4.538 18 H 0.073 0.927 19 C 0.015 3.985 20 N -0.908 5.908 21 Si 0.993 3.007 22 H -0.275 1.275 23 H -0.265 1.265 24 H -0.264 1.264 25 C 0.049 3.951 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.271 0.729 40 H 0.082 0.918 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.723 -19.729 19.698 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.321 3.679 4 O -0.383 6.383 5 C -0.110 4.110 6 C 0.419 3.581 7 F -0.147 7.147 8 F -0.162 7.162 9 F -0.145 7.145 10 C -0.140 4.140 11 C -0.103 4.103 12 N -0.239 5.239 13 C -0.070 4.070 14 C -0.118 4.118 15 C -0.237 4.237 16 S 0.031 5.969 17 C -0.686 4.686 18 H 0.091 0.909 19 C -0.190 4.190 20 N -0.544 5.544 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.190 1.190 24 H -0.188 1.188 25 C -0.079 4.079 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.929 -19.813 18.342 29.128 hybrid contribution 1.688 1.427 1.379 2.605 sum -9.242 -18.386 19.722 28.502 Atomic orbital electron populations 1.23688 0.73650 1.06281 1.02924 1.86515 1.25712 1.31090 1.83272 1.22501 0.90141 0.82304 0.72927 1.90713 1.66356 1.36985 1.44295 1.22545 0.90733 1.01103 0.96658 1.19747 0.76541 0.77519 0.84256 1.93231 1.29003 1.95911 1.96571 1.93231 1.87177 1.81943 1.53826 1.93261 1.91055 1.33543 1.96600 1.22523 1.01726 0.98475 0.91268 1.23367 0.97542 0.87658 1.01727 1.65424 1.43036 1.03825 1.11624 1.22203 0.95077 0.93676 0.96043 1.21083 0.98754 0.96083 0.95888 1.23155 1.01854 1.00862 0.97861 1.84643 1.63530 1.41967 1.06781 1.23013 1.32605 1.17059 0.95936 0.90889 1.26070 0.98107 1.00778 0.94072 1.70151 1.44123 1.41820 0.98310 0.85079 0.78225 0.77414 0.77789 1.20022 1.19004 1.18848 1.23162 1.02482 0.90472 0.91805 0.91560 0.84434 0.91611 0.87797 0.86716 0.88307 0.91375 0.92772 0.90099 0.91853 0.91306 0.91672 0.92020 0.91984 0.89991 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.93 9.62 -51.40 -0.49 -6.43 16 3 C 0.48 9.88 6.12 71.24 0.44 10.32 16 4 O -0.50 -12.95 15.16 21.95 0.33 -12.62 16 5 C -0.11 -1.89 0.51 -52.03 -0.03 -1.92 16 6 C 0.47 7.99 2.06 71.98 0.15 8.14 16 7 F -0.17 -2.70 16.05 44.97 0.72 -1.98 16 8 F -0.18 -3.40 16.86 44.97 0.76 -2.64 16 9 F -0.16 -2.70 16.02 44.97 0.72 -1.98 16 10 C -0.10 -1.47 5.90 31.49 0.19 -1.29 16 11 C 0.02 0.43 5.74 86.45 0.50 0.93 16 12 N -0.52 -11.37 5.37 -881.48 -4.73 -16.11 16 13 C 0.06 1.43 4.81 86.30 0.41 1.84 16 14 C -0.08 -2.45 5.27 30.59 0.16 -2.29 16 15 C -0.09 -3.44 5.67 71.98 0.41 -3.03 16 16 S -0.20 -10.50 21.44 -56.49 -1.21 -11.71 16 17 C -0.54 -31.08 9.50 67.96 0.65 -30.44 16 18 H 0.07 4.04 7.80 -2.92 -0.02 4.02 16 19 C 0.01 0.83 5.49 84.86 0.47 1.30 16 20 N -0.91 -54.94 13.22 21.65 0.29 -54.66 16 21 Si 0.99 43.90 29.55 68.60 2.03 45.92 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 25 C 0.05 0.95 5.17 86.45 0.45 1.40 16 26 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 27 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.76 8.13 -2.38 -0.02 0.74 16 29 H 0.10 1.41 7.69 -2.39 -0.02 1.39 16 30 H 0.11 1.22 7.40 -2.39 -0.02 1.20 16 31 H 0.10 1.79 7.76 -2.39 -0.02 1.77 16 32 H 0.07 1.09 7.82 -2.39 -0.02 1.08 16 33 H 0.05 1.17 7.88 -2.39 -0.02 1.16 16 34 H 0.08 1.93 8.13 -2.39 -0.02 1.91 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 2.09 7.26 -2.39 -0.02 2.07 16 37 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.08 1.39 7.13 -2.38 -0.02 1.37 16 41 H 0.10 2.30 6.85 -2.39 -0.02 2.28 16 Total: -1.00 -70.34 364.30 4.44 -65.90 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.05 Total: 9.82 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.98 Total: -13.53 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -4.45 Total: -70.76 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.16 Total: -19.05 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 2.20 Total: -6.59 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -10.50 SS G_CDS: -1.21 Total: -11.71 kcal Total: -70.34 4.44 -65.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375787298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.220 kcal (2) G-P(sol) polarization free energy of solvation -70.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds