Wall clock time and date at job start Sat Apr 11 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99909 * 2 1 4 4 O 1.20828 * 120.00179 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99759 * 179.97438 * 3 2 1 6 6 C 1.53005 * 110.28701 * 60.67381 * 5 3 2 7 7 F 1.39900 * 109.46889 * 299.32396 * 6 5 3 8 8 F 1.39901 * 109.46934 * 59.32454 * 6 5 3 9 9 F 1.39905 * 109.46895 * 179.32437 * 6 5 3 10 10 C 1.54258 * 110.32815 * 298.54382 * 5 3 2 11 11 C 1.54374 * 105.06259 * 241.10541 * 10 5 3 12 12 N 1.48565 * 104.59617 * 23.85184 * 11 10 5 13 13 C 1.46898 * 111.00263 * 200.96349 * 12 11 10 14 14 C 1.52999 * 109.47392 * 175.65946 * 13 12 11 15 15 C 1.53000 * 109.47181 * 174.86702 * 14 13 12 16 16 S 1.80994 * 109.47030 * 179.97438 * 15 14 13 17 17 C 1.76206 * 100.00078 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99530 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00156 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00035 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99922 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46814 * 90.00254 * 21 19 17 23 23 H 1.48498 * 109.46772 * 210.00020 * 21 19 17 24 24 H 1.48497 * 109.47044 * 330.00243 * 21 19 17 25 25 C 1.48564 * 104.21943 * 320.51719 * 12 11 10 26 26 H 1.08996 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47201 * 300.00244 * 1 2 3 28 28 H 1.09005 * 109.47017 * 60.00117 * 1 2 3 29 29 H 1.08991 * 110.32404 * 122.20552 * 10 5 3 30 30 H 1.09004 * 110.40316 * 0.04497 * 10 5 3 31 31 H 1.08994 * 110.41419 * 265.07275 * 11 10 5 32 32 H 1.09002 * 110.51193 * 142.67387 * 11 10 5 33 33 H 1.09001 * 109.47378 * 55.65673 * 13 12 11 34 34 H 1.09004 * 109.46596 * 295.65939 * 13 12 11 35 35 H 1.09001 * 109.46939 * 54.86759 * 14 13 12 36 36 H 1.08993 * 109.46925 * 294.87136 * 14 13 12 37 37 H 1.09004 * 109.47154 * 299.99837 * 15 14 13 38 38 H 1.09001 * 109.47138 * 60.00179 * 15 14 13 39 39 H 0.96995 * 119.99756 * 179.97438 * 20 19 17 40 40 H 1.09001 * 110.41369 * 158.26064 * 25 12 11 41 41 H 1.09005 * 110.41132 * 280.70345 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1334 0.6004 -1.2503 7 9 3.7591 -0.7476 -1.2635 8 9 3.6304 1.2352 -2.3910 9 9 5.5291 0.6968 -1.2400 10 6 4.1371 0.6129 1.2716 11 6 4.8937 1.7405 2.0060 12 7 4.2615 2.9939 1.5197 13 6 5.1526 4.1446 1.7188 14 6 4.5148 5.3950 1.1101 15 6 5.3806 6.6157 1.4284 16 16 4.6264 8.0947 0.7075 17 6 5.7964 9.3117 1.2123 18 1 6.6599 9.0225 1.7928 19 6 5.6076 10.6421 0.8647 20 7 6.4819 11.5512 1.2413 21 14 4.1135 11.1424 -0.1388 22 1 2.9936 11.4807 0.7759 23 1 4.4492 12.3266 -0.9695 24 1 3.7101 10.0175 -1.0204 25 6 4.0261 2.7468 0.0738 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.8225 -0.1913 1.0044 30 1 3.3298 0.2297 1.8958 31 1 5.9515 1.7218 1.7440 32 1 4.7682 1.6451 3.0845 33 1 6.1093 3.9517 1.2334 34 1 5.3116 4.3006 2.7859 35 1 3.5190 5.5362 1.5303 36 1 4.4393 5.2748 0.0294 37 1 5.4560 6.7358 2.5091 38 1 6.3763 6.4744 1.0081 39 1 6.3501 12.4809 0.9981 40 1 3.2457 3.4080 -0.3027 41 1 4.9482 2.8856 -0.4906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375787299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:50 Heat of formation + Delta-G solvation = -235.171462 kcal Electronic energy + Delta-G solvation = -28510.120858 eV Core-core repulsion = 23908.472079 eV Total energy + Delta-G solvation = -4601.648779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.61955 -48.09264 -48.04507 -41.31560 -39.22614 -36.89411 -34.95549 -32.42870 -32.02341 -29.83352 -28.26392 -26.54555 -25.71688 -24.94891 -23.65314 -21.94743 -21.26581 -20.30699 -19.27243 -18.78834 -18.64182 -17.55166 -17.40034 -17.05876 -16.52639 -15.86667 -15.24305 -14.96277 -14.93705 -14.90358 -14.75096 -14.51779 -14.44177 -14.18604 -14.16661 -13.90924 -13.73387 -13.59771 -13.31211 -12.86583 -12.67683 -12.51988 -12.26953 -12.16409 -12.03572 -11.81501 -11.58861 -11.42799 -11.22490 -11.05057 -11.00515 -10.90347 -10.48923 -10.14729 -9.76782 -8.99199 -8.81087 -8.54527 -6.92817 -6.27315 -3.99407 1.43746 1.94688 2.22674 3.00573 3.11648 3.19309 3.32006 3.46954 3.47861 3.55386 3.80095 3.96723 4.02559 4.23721 4.33248 4.61581 4.66419 4.71896 4.81291 4.81457 4.96442 5.05441 5.11417 5.13096 5.19428 5.21786 5.31825 5.49937 5.51342 5.57076 5.70930 5.84734 5.92375 6.15579 6.38957 6.47376 6.59135 6.75597 7.18263 7.96529 8.45105 9.18829 10.82184 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002553 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.363891 B =10965.154016 C =11315.906290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.478 3.522 4 O -0.462 6.462 5 C -0.108 4.108 6 C 0.469 3.531 7 F -0.166 7.166 8 F -0.173 7.173 9 F -0.169 7.169 10 C -0.107 4.107 11 C 0.028 3.972 12 N -0.500 5.500 13 C 0.049 3.951 14 C -0.101 4.101 15 C -0.082 4.082 16 S -0.214 6.214 17 C -0.502 4.502 18 H 0.088 0.912 19 C 0.091 3.909 20 N -0.883 5.883 21 Si 0.861 3.139 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.238 1.238 25 C 0.046 3.954 26 H 0.105 0.895 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.270 0.730 40 H 0.120 0.880 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 -29.707 -1.913 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.266 6.266 3 C 0.317 3.683 4 O -0.346 6.346 5 C -0.112 4.112 6 C 0.414 3.586 7 F -0.148 7.148 8 F -0.154 7.154 9 F -0.150 7.150 10 C -0.145 4.145 11 C -0.100 4.100 12 N -0.224 5.224 13 C -0.080 4.080 14 C -0.140 4.140 15 C -0.231 4.231 16 S 0.014 5.986 17 C -0.649 4.649 18 H 0.106 0.894 19 C -0.117 4.117 20 N -0.519 5.519 21 Si 0.686 3.314 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.161 1.161 25 C -0.082 4.082 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.940 -28.952 -2.252 30.385 hybrid contribution 1.311 0.159 -0.323 1.360 sum -7.629 -28.793 -2.575 29.898 Atomic orbital electron populations 1.23384 0.75203 1.04136 1.03086 1.86510 1.24156 1.32039 1.83934 1.22284 0.89714 0.82331 0.74005 1.90749 1.65547 1.35933 1.42339 1.22588 0.91309 1.01526 0.95748 1.19851 0.76520 0.77497 0.84742 1.93252 1.91060 1.33788 1.96652 1.93252 1.87053 1.81770 1.53342 1.93224 1.29274 1.95918 1.96617 1.22449 1.01298 0.98461 0.92284 1.23240 0.97030 0.88490 1.01207 1.65553 1.42580 1.03014 1.11233 1.22405 0.93474 0.89882 1.02204 1.21369 1.00031 0.91613 1.00978 1.23001 1.01014 0.96131 1.02929 1.84212 1.38751 1.02497 1.73142 1.22127 1.09979 0.92755 1.40085 0.89426 1.24794 0.96527 0.95367 0.94979 1.69937 1.35250 1.01931 1.44827 0.86672 0.83018 0.80122 0.81561 1.19342 1.20126 1.16148 1.23292 1.02756 0.89798 0.92392 0.87627 0.91362 0.91499 0.88726 0.88361 0.92399 0.88522 0.93984 0.89646 0.90265 0.91612 0.91287 0.91525 0.91989 0.86240 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.22 9.62 -39.25 -0.38 -3.60 16 3 C 0.48 5.25 6.13 36.01 0.22 5.47 16 4 O -0.46 -6.35 15.16 -18.75 -0.28 -6.63 16 5 C -0.11 -1.05 0.51 -154.27 -0.08 -1.13 16 6 C 0.47 4.54 2.06 37.16 0.08 4.62 16 7 F -0.17 -1.56 16.02 2.25 0.04 -1.52 16 8 F -0.17 -1.90 16.86 2.25 0.04 -1.86 16 9 F -0.17 -1.61 16.05 2.25 0.04 -1.57 16 10 C -0.11 -0.79 5.90 -25.35 -0.15 -0.94 16 11 C 0.03 0.23 6.49 -2.18 -0.01 0.21 16 12 N -0.50 -5.54 5.45 -229.96 -1.25 -6.80 16 13 C 0.05 0.59 4.91 -3.83 -0.02 0.58 16 14 C -0.10 -1.55 4.95 -26.73 -0.13 -1.68 16 15 C -0.08 -1.57 5.67 37.16 0.21 -1.35 16 16 S -0.21 -5.27 19.41 -107.50 -2.09 -7.35 16 17 C -0.50 -14.65 10.04 30.94 0.31 -14.34 16 18 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 19 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 20 N -0.88 -26.95 13.97 55.49 0.78 -26.18 16 21 Si 0.86 21.80 27.74 -169.99 -4.72 17.09 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 25 C 0.05 0.51 4.05 -2.18 -0.01 0.50 16 26 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.09 0.55 7.39 -51.93 -0.38 0.17 16 30 H 0.10 0.66 7.69 -51.93 -0.40 0.26 16 31 H 0.06 0.43 7.91 -51.93 -0.41 0.02 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.48 7.97 -51.93 -0.41 0.06 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.01 7.22 -51.93 -0.38 0.64 16 37 H 0.07 1.32 8.14 -51.91 -0.42 0.89 16 38 H 0.07 1.27 8.14 -51.91 -0.42 0.84 16 39 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.12 1.55 6.50 -51.93 -0.34 1.21 16 41 H 0.07 0.77 7.10 -51.93 -0.37 0.40 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -32.93 361.26 -6.65 -39.58 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.65 Total: -2.44 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 1.39 Total: -4.17 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.48 Total: -32.97 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.66 Total: -10.23 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.11 Total: -4.96 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.09 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -2.09 Total: -7.35 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.93 -6.65 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375787299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.591 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds