Wall clock time and date at job start Sat Apr 11 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99909 * 2 1 4 4 O 1.20828 * 120.00179 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99759 * 179.97438 * 3 2 1 6 6 C 1.53005 * 110.28701 * 60.67381 * 5 3 2 7 7 F 1.39900 * 109.46889 * 299.32396 * 6 5 3 8 8 F 1.39901 * 109.46934 * 59.32454 * 6 5 3 9 9 F 1.39905 * 109.46895 * 179.32437 * 6 5 3 10 10 C 1.54258 * 110.32815 * 298.54382 * 5 3 2 11 11 C 1.54374 * 105.06259 * 241.10541 * 10 5 3 12 12 N 1.48565 * 104.59617 * 23.85184 * 11 10 5 13 13 C 1.46898 * 111.00263 * 200.96349 * 12 11 10 14 14 C 1.52999 * 109.47392 * 175.65946 * 13 12 11 15 15 C 1.53000 * 109.47181 * 174.86702 * 14 13 12 16 16 S 1.80994 * 109.47030 * 179.97438 * 15 14 13 17 17 C 1.76206 * 100.00078 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99530 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00156 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00035 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99922 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46814 * 90.00254 * 21 19 17 23 23 H 1.48498 * 109.46772 * 210.00020 * 21 19 17 24 24 H 1.48497 * 109.47044 * 330.00243 * 21 19 17 25 25 C 1.48564 * 104.21943 * 320.51719 * 12 11 10 26 26 H 1.08996 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47201 * 300.00244 * 1 2 3 28 28 H 1.09005 * 109.47017 * 60.00117 * 1 2 3 29 29 H 1.08991 * 110.32404 * 122.20552 * 10 5 3 30 30 H 1.09004 * 110.40316 * 0.04497 * 10 5 3 31 31 H 1.08994 * 110.41419 * 265.07275 * 11 10 5 32 32 H 1.09002 * 110.51193 * 142.67387 * 11 10 5 33 33 H 1.09001 * 109.47378 * 55.65673 * 13 12 11 34 34 H 1.09004 * 109.46596 * 295.65939 * 13 12 11 35 35 H 1.09001 * 109.46939 * 54.86759 * 14 13 12 36 36 H 1.08993 * 109.46925 * 294.87136 * 14 13 12 37 37 H 1.09004 * 109.47154 * 299.99837 * 15 14 13 38 38 H 1.09001 * 109.47138 * 60.00179 * 15 14 13 39 39 H 0.96995 * 119.99756 * 179.97438 * 20 19 17 40 40 H 1.09001 * 110.41369 * 158.26064 * 25 12 11 41 41 H 1.09005 * 110.41132 * 280.70345 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1334 0.6004 -1.2503 7 9 3.7591 -0.7476 -1.2635 8 9 3.6304 1.2352 -2.3910 9 9 5.5291 0.6968 -1.2400 10 6 4.1371 0.6129 1.2716 11 6 4.8937 1.7405 2.0060 12 7 4.2615 2.9939 1.5197 13 6 5.1526 4.1446 1.7188 14 6 4.5148 5.3950 1.1101 15 6 5.3806 6.6157 1.4284 16 16 4.6264 8.0947 0.7075 17 6 5.7964 9.3117 1.2123 18 1 6.6599 9.0225 1.7928 19 6 5.6076 10.6421 0.8647 20 7 6.4819 11.5512 1.2413 21 14 4.1135 11.1424 -0.1388 22 1 2.9936 11.4807 0.7759 23 1 4.4492 12.3266 -0.9695 24 1 3.7101 10.0175 -1.0204 25 6 4.0261 2.7468 0.0738 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.8225 -0.1913 1.0044 30 1 3.3298 0.2297 1.8958 31 1 5.9515 1.7218 1.7440 32 1 4.7682 1.6451 3.0845 33 1 6.1093 3.9517 1.2334 34 1 5.3116 4.3006 2.7859 35 1 3.5190 5.5362 1.5303 36 1 4.4393 5.2748 0.0294 37 1 5.4560 6.7358 2.5091 38 1 6.3763 6.4744 1.0081 39 1 6.3501 12.4809 0.9981 40 1 3.2457 3.4080 -0.3027 41 1 4.9482 2.8856 -0.4906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375787299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:47 Heat of formation + Delta-G solvation = -256.321927 kcal Electronic energy + Delta-G solvation = -28511.038011 eV Core-core repulsion = 23908.472079 eV Total energy + Delta-G solvation = -4602.565932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.106 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -51.38763 -48.87686 -48.80017 -42.11262 -40.01147 -37.70814 -35.99054 -34.68892 -33.06245 -30.59834 -28.88018 -28.01434 -27.39701 -25.93150 -24.51917 -22.79577 -22.21852 -21.20872 -20.04532 -19.65228 -19.51552 -19.40599 -18.22682 -17.90365 -17.28979 -17.10769 -16.79979 -16.40442 -15.83513 -15.67843 -15.59849 -15.46950 -15.27883 -15.20449 -14.97400 -14.93563 -14.90124 -14.57173 -14.44664 -14.20307 -13.61462 -13.45929 -13.28931 -13.25633 -13.15377 -12.98575 -12.86132 -12.76172 -12.46554 -12.19572 -12.01597 -11.91853 -11.79636 -11.64360 -11.59902 -11.16914 -10.55715 -9.62021 -8.99768 -8.52539 -6.23499 0.62942 1.11793 1.23779 1.31122 1.45741 1.47302 1.73968 2.24187 2.35810 2.42542 2.68525 2.75112 2.85629 2.94243 3.24177 3.29000 3.53761 3.89633 3.99025 4.04732 4.13772 4.22089 4.23559 4.27215 4.30108 4.46769 4.55459 4.61713 4.68697 4.69756 4.79167 4.80585 4.91674 5.10881 5.11989 5.24811 5.61698 5.69623 5.84506 6.09840 6.39663 6.92081 8.60498 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002553 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.363891 B =10965.154016 C =11315.906290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.479 3.521 4 O -0.497 6.497 5 C -0.107 4.107 6 C 0.472 3.528 7 F -0.162 7.162 8 F -0.184 7.184 9 F -0.166 7.166 10 C -0.102 4.102 11 C 0.028 3.972 12 N -0.513 5.513 13 C 0.059 3.941 14 C -0.090 4.090 15 C -0.067 4.067 16 S -0.228 6.228 17 C -0.519 4.519 18 H 0.053 0.947 19 C 0.038 3.962 20 N -0.922 5.922 21 Si 0.924 3.076 22 H -0.262 1.262 23 H -0.262 1.262 24 H -0.231 1.231 25 C 0.044 3.956 26 H 0.139 0.861 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.277 0.723 40 H 0.096 0.904 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 -32.012 -1.971 33.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.320 3.680 4 O -0.384 6.384 5 C -0.110 4.110 6 C 0.417 3.583 7 F -0.144 7.144 8 F -0.165 7.165 9 F -0.147 7.147 10 C -0.140 4.140 11 C -0.099 4.099 12 N -0.237 5.237 13 C -0.070 4.070 14 C -0.129 4.129 15 C -0.216 4.216 16 S 0.000 6.000 17 C -0.666 4.666 18 H 0.071 0.929 19 C -0.166 4.166 20 N -0.560 5.560 21 Si 0.745 3.255 22 H -0.187 1.187 23 H -0.187 1.187 24 H -0.155 1.155 25 C -0.084 4.084 26 H 0.157 0.843 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.603 -31.290 -2.307 32.811 hybrid contribution 1.545 0.743 -0.252 1.732 sum -8.058 -30.547 -2.558 31.695 Atomic orbital electron populations 1.23681 0.73721 1.06264 1.02869 1.86511 1.25630 1.30991 1.83323 1.22540 0.90212 0.82300 0.72990 1.90736 1.66394 1.37087 1.44174 1.22566 0.90666 1.00931 0.96875 1.19817 0.76573 0.77544 0.84349 1.93259 1.91050 1.33442 1.96607 1.93233 1.87234 1.82032 1.53992 1.93230 1.28999 1.95919 1.96576 1.22543 1.01846 0.98584 0.90982 1.23359 0.97545 0.86890 1.02073 1.65502 1.43023 1.03994 1.11205 1.22236 0.93626 0.88708 1.02462 1.21243 0.98941 0.91557 1.01128 1.23055 1.01392 0.94657 1.02451 1.83985 1.38228 1.03958 1.73870 1.22327 1.10095 0.94528 1.39694 0.92873 1.25746 0.99489 0.95349 0.96041 1.70031 1.37215 1.02613 1.46159 0.85738 0.79274 0.80230 0.80261 1.18680 1.18672 1.15498 1.23193 1.02216 0.90418 0.92592 0.84328 0.91439 0.91945 0.86683 0.87472 0.91196 0.87042 0.92832 0.88757 0.91280 0.91797 0.91167 0.91269 0.91401 0.88593 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.86 9.62 -51.39 -0.49 -6.36 16 3 C 0.48 10.07 6.13 71.24 0.44 10.51 16 4 O -0.50 -13.67 15.16 21.96 0.33 -13.33 16 5 C -0.11 -1.91 0.51 -52.03 -0.03 -1.93 16 6 C 0.47 8.38 2.06 71.98 0.15 8.53 16 7 F -0.16 -2.70 16.02 44.97 0.72 -1.98 16 8 F -0.18 -3.90 16.86 44.97 0.76 -3.15 16 9 F -0.17 -2.81 16.05 44.97 0.72 -2.09 16 10 C -0.10 -1.21 5.90 31.49 0.19 -1.02 16 11 C 0.03 0.37 6.49 86.45 0.56 0.93 16 12 N -0.51 -10.40 5.45 -881.47 -4.80 -15.19 16 13 C 0.06 1.30 4.91 86.30 0.42 1.73 16 14 C -0.09 -2.67 4.95 30.59 0.15 -2.51 16 15 C -0.07 -2.51 5.67 71.98 0.41 -2.11 16 16 S -0.23 -11.22 19.41 -56.49 -1.10 -12.31 16 17 C -0.52 -30.89 10.04 67.95 0.68 -30.21 16 18 H 0.05 3.41 8.03 -2.91 -0.02 3.39 16 19 C 0.04 2.29 5.50 84.86 0.47 2.75 16 20 N -0.92 -57.25 13.97 21.65 0.30 -56.95 16 21 Si 0.92 45.01 27.74 68.60 1.90 46.91 16 22 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.23 -10.97 6.74 99.48 0.67 -10.30 16 25 C 0.04 0.93 4.05 86.45 0.35 1.28 16 26 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 28 H 0.06 0.78 8.13 -2.38 -0.02 0.76 16 29 H 0.11 0.93 7.39 -2.39 -0.02 0.91 16 30 H 0.11 1.11 7.69 -2.39 -0.02 1.10 16 31 H 0.07 0.78 7.91 -2.39 -0.02 0.76 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.07 7.97 -2.39 -0.02 1.05 16 34 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 1.93 7.22 -2.39 -0.02 1.91 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 39 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.10 2.50 6.50 -2.39 -0.02 2.48 16 41 H 0.08 1.52 7.10 -2.38 -0.02 1.50 16 Total: -1.00 -71.97 361.26 4.34 -67.62 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.01 Total: 7.37 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 4.99 Total: -10.55 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -4.50 Total: -72.14 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.16 Total: -19.69 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 2.20 Total: -7.22 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 16 Polarization: -11.22 SS G_CDS: -1.10 Total: -12.31 kcal Total: -71.97 4.34 -67.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375787299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.699 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds