Wall clock time and date at job start Sat Apr 11 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42107 * 110.54111 * 2 1 4 4 O 1.42102 * 110.54223 * 136.75010 * 2 1 3 5 5 C 1.76200 * 104.45035 * 248.37826 * 2 1 3 6 6 C 1.38265 * 119.93826 * 269.72794 * 5 2 1 7 7 C 1.38150 * 120.05274 * 179.72608 * 6 5 2 8 8 C 1.38737 * 119.93984 * 0.56466 * 7 6 5 9 9 O 1.35898 * 120.05362 * 179.68459 * 8 7 6 10 10 C 1.42902 * 117.00054 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47244 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47358 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47183 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00009 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00030 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00257 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47274 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99764 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00048 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99840 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46838 * 89.99709 * 21 19 17 23 23 H 1.48494 * 109.46858 * 210.00007 * 21 19 17 24 24 H 1.48495 * 109.46792 * 329.99993 * 21 19 17 25 25 C 1.38725 * 119.88903 * 359.70500 * 8 7 6 26 26 C 1.38137 * 119.94698 * 0.02562 * 25 8 7 27 27 H 1.09002 * 109.47124 * 171.62372 * 1 2 3 28 28 H 1.09001 * 109.46975 * 51.62493 * 1 2 3 29 29 H 1.09004 * 109.47147 * 291.62456 * 1 2 3 30 30 H 1.07992 * 119.97777 * 359.97438 * 6 5 2 31 31 H 1.07995 * 120.03154 * 180.25119 * 7 6 5 32 32 H 1.09000 * 109.47406 * 299.99777 * 10 9 8 33 33 H 1.08996 * 109.47318 * 59.99924 * 10 9 8 34 34 H 1.09007 * 109.47385 * 299.99764 * 11 10 9 35 35 H 1.09004 * 109.47441 * 59.99893 * 11 10 9 36 36 H 1.09010 * 109.46504 * 299.99502 * 12 11 10 37 37 H 1.08996 * 109.47566 * 59.99537 * 12 11 10 38 38 H 0.97003 * 119.99600 * 359.97438 * 15 13 12 39 39 H 1.09000 * 109.46560 * 299.99979 * 16 15 13 40 40 H 1.08996 * 109.47150 * 59.99505 * 16 15 13 41 41 H 0.97003 * 119.99826 * 180.02562 * 20 19 17 42 42 H 1.08007 * 120.02267 * 179.97438 * 25 8 7 43 43 H 1.08003 * 119.97413 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.4314 -1.9883 -1.7646 7 6 2.7706 -2.4843 -3.0085 8 6 2.9444 -1.6159 -4.0764 9 8 3.2844 -2.1008 -5.2996 10 6 3.4462 -3.5160 -5.4144 11 6 3.8263 -3.8707 -6.8533 12 6 3.9989 -5.3860 -6.9765 13 6 4.3740 -5.7354 -8.3936 14 8 4.4912 -4.8588 -9.2236 15 7 4.5791 -7.0219 -8.7388 16 6 4.9432 -7.3617 -10.1166 17 6 5.1145 -8.8540 -10.2375 18 1 4.9674 -9.4861 -9.3742 19 6 5.4591 -9.4124 -11.4501 20 7 5.6378 -8.6426 -12.5014 21 14 5.6722 -11.2621 -11.5999 22 1 4.3731 -11.8820 -11.9649 23 1 6.6765 -11.5611 -12.6521 24 1 6.1364 -11.8135 -10.3016 25 6 2.7710 -0.2517 -3.8934 26 6 2.4264 0.2387 -2.6489 27 1 -0.3633 -1.0167 -0.1497 28 1 -0.3633 0.6380 -0.8057 29 1 -0.3634 0.3787 0.9554 30 1 2.3011 -2.6633 -0.9318 31 1 2.9054 -3.5467 -3.1484 32 1 4.2344 -3.8476 -4.7386 33 1 2.5111 -4.0110 -5.1527 34 1 3.0384 -3.5391 -7.5297 35 1 4.7617 -3.3757 -7.1147 36 1 4.7867 -5.7180 -6.3002 37 1 3.0635 -5.8807 -6.7153 38 1 4.4857 -7.7230 -8.0749 39 1 4.1552 -7.0300 -10.7928 40 1 5.8784 -6.8666 -10.3779 41 1 5.8799 -9.0355 -13.3546 42 1 2.9062 0.4263 -4.7232 43 1 2.2908 1.3007 -2.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427620579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:31 Heat of formation + Delta-G solvation = -131.604901 kcal Electronic energy + Delta-G solvation = -25369.446550 eV Core-core repulsion = 21314.145494 eV Total energy + Delta-G solvation = -4055.301056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -40.66247 -38.99856 -38.01410 -37.52354 -36.34982 -34.41255 -33.77980 -32.36874 -31.62214 -30.79021 -29.95113 -28.25859 -26.58473 -23.84717 -23.37292 -22.53135 -21.42066 -19.73146 -19.49033 -18.82104 -17.89331 -17.16384 -16.75016 -16.66964 -16.60094 -15.88627 -15.55288 -15.21849 -15.18434 -15.11679 -14.40686 -14.12082 -14.03560 -13.86563 -13.76503 -13.69979 -13.47995 -12.92003 -12.85190 -12.50418 -12.41341 -12.20331 -12.03190 -11.98902 -11.79074 -11.59957 -11.45634 -11.21398 -11.14840 -11.01148 -10.92559 -10.82420 -10.36061 -9.60657 -9.44904 -9.15334 -9.01132 -8.78575 -7.95251 -6.21099 -4.28491 -0.38887 0.46549 0.79625 2.42322 2.65171 2.96064 3.20764 3.27078 3.28120 3.29364 3.49901 3.65351 4.01519 4.18246 4.24568 4.29327 4.32633 4.44263 4.64360 4.66918 4.75032 4.86109 4.93070 5.03387 5.09661 5.14973 5.15043 5.24325 5.38495 5.43568 5.48758 5.61808 5.71374 5.75633 5.96460 6.11382 6.22196 6.89540 7.24882 7.36439 7.46114 7.60764 7.92091 8.55436 8.72111 9.02704 9.38349 10.89062 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.036714 B = 0.001384 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.474625 B =20223.520361 C =20750.313573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.506 3.494 3 O -0.940 6.940 4 O -0.941 6.941 5 C -0.705 4.705 6 C 0.018 3.982 7 C -0.232 4.232 8 C 0.191 3.809 9 O -0.304 6.304 10 C 0.055 3.945 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.497 3.503 14 O -0.556 6.556 15 N -0.712 5.712 16 C 0.248 3.752 17 C -0.545 4.545 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.174 4.174 26 C 0.014 3.986 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.391 0.609 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.266 0.734 42 H 0.142 0.858 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 16.013 26.347 33.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.686 3.314 3 O -0.938 6.938 4 O -0.938 6.938 5 C -0.793 4.793 6 C -0.001 4.001 7 C -0.251 4.251 8 C 0.143 3.857 9 O -0.216 6.216 10 C -0.019 4.019 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.282 3.718 14 O -0.435 6.435 15 N -0.361 5.361 16 C 0.128 3.872 17 C -0.584 4.584 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.194 4.194 26 C -0.005 4.005 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.223 0.777 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.160 0.840 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.303 16.954 25.956 32.999 hybrid contribution -0.373 -1.963 -0.566 2.077 sum -11.676 14.991 25.391 31.714 Atomic orbital electron populations 1.30243 1.25957 1.12087 1.11796 1.04927 0.77692 0.74547 0.74250 1.93585 1.77322 1.36648 1.86200 1.93584 1.77332 1.61701 1.61175 1.30309 1.23788 1.02925 1.22253 1.20726 0.89445 0.93154 0.96822 1.21443 1.09683 1.00549 0.93457 1.19398 0.88680 0.93349 0.84255 1.86154 1.82030 1.25680 1.27708 1.23074 1.01346 0.77832 0.99685 1.21235 1.04619 0.95045 0.93173 1.21535 1.03542 0.96286 0.96496 1.20333 0.78348 0.83605 0.89547 1.90678 1.52632 1.47784 1.52414 1.46478 1.68295 1.06402 1.14882 1.19120 0.96225 0.95544 0.76350 1.21224 1.49552 0.91409 0.96175 0.91887 1.24960 0.94797 0.98819 0.95445 1.69975 1.46130 1.35402 1.00709 0.86400 0.78039 0.84392 0.77982 1.20451 1.20969 1.19759 1.20611 1.07168 0.92780 0.98794 1.20736 0.90015 0.99445 0.90310 0.84999 0.84962 0.85110 0.83842 0.84237 0.91355 0.91383 0.89843 0.89812 0.89083 0.89101 0.77663 0.95515 0.95506 0.92403 0.84007 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.25 10.80 101.05 1.09 -0.16 16 2 S 2.51 14.91 5.80 -107.50 -0.62 14.29 16 3 O -0.94 -8.62 17.12 -57.54 -0.99 -9.61 16 4 O -0.94 -8.68 17.11 -57.54 -0.98 -9.67 16 5 C -0.71 -5.02 5.66 -39.56 -0.22 -5.24 16 6 C 0.02 0.13 9.46 -39.60 -0.37 -0.25 16 7 C -0.23 -1.85 9.04 -39.43 -0.36 -2.21 16 8 C 0.19 1.80 6.69 -39.22 -0.26 1.54 16 9 O -0.30 -3.21 10.14 -19.42 -0.20 -3.41 16 10 C 0.06 0.49 4.74 37.16 0.18 0.66 16 11 C -0.10 -1.20 4.87 -26.73 -0.13 -1.33 16 12 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 13 C 0.50 9.25 7.83 -10.98 -0.09 9.16 16 14 O -0.56 -12.85 15.98 5.56 0.09 -12.76 16 15 N -0.71 -14.30 5.55 -61.47 -0.34 -14.64 16 16 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 17 C -0.55 -14.55 9.28 -34.44 -0.32 -14.87 16 18 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.88 -25.81 13.29 55.43 0.74 -25.07 16 21 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.17 -1.47 9.99 -39.44 -0.39 -1.87 16 26 C 0.01 0.10 9.46 -39.61 -0.37 -0.27 16 27 H 0.13 0.09 8.14 -51.92 -0.42 -0.33 16 28 H 0.13 0.08 8.14 -51.92 -0.42 -0.34 16 29 H 0.13 0.09 8.14 -51.92 -0.42 -0.33 16 30 H 0.14 0.77 7.56 -52.49 -0.40 0.38 16 31 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 32 H 0.07 0.50 7.66 -51.93 -0.40 0.11 16 33 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 36 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.15 0.77 7.57 -52.48 -0.40 0.37 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -38.19 382.47 -9.12 -47.31 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.02 Total: 0.83 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.54 Total: -8.54 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.40 Total: -39.71 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -2.08 Total: -35.45 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 14.91 SS G_CDS: -0.62 Total: 14.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.19 -9.12 -47.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427620579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.299 kcal (2) G-P(sol) polarization free energy of solvation -38.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds