Wall clock time and date at job start Sat Apr 11 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42107 * 110.54111 * 2 1 4 4 O 1.42102 * 110.54223 * 136.75010 * 2 1 3 5 5 C 1.76200 * 104.45035 * 248.37826 * 2 1 3 6 6 C 1.38265 * 119.93826 * 269.72794 * 5 2 1 7 7 C 1.38150 * 120.05274 * 179.72608 * 6 5 2 8 8 C 1.38737 * 119.93984 * 0.56466 * 7 6 5 9 9 O 1.35898 * 120.05362 * 179.68459 * 8 7 6 10 10 C 1.42902 * 117.00054 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47244 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47358 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47183 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00009 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00030 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00257 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47274 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99764 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00048 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99840 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46838 * 89.99709 * 21 19 17 23 23 H 1.48494 * 109.46858 * 210.00007 * 21 19 17 24 24 H 1.48495 * 109.46792 * 329.99993 * 21 19 17 25 25 C 1.38725 * 119.88903 * 359.70500 * 8 7 6 26 26 C 1.38137 * 119.94698 * 0.02562 * 25 8 7 27 27 H 1.09002 * 109.47124 * 171.62372 * 1 2 3 28 28 H 1.09001 * 109.46975 * 51.62493 * 1 2 3 29 29 H 1.09004 * 109.47147 * 291.62456 * 1 2 3 30 30 H 1.07992 * 119.97777 * 359.97438 * 6 5 2 31 31 H 1.07995 * 120.03154 * 180.25119 * 7 6 5 32 32 H 1.09000 * 109.47406 * 299.99777 * 10 9 8 33 33 H 1.08996 * 109.47318 * 59.99924 * 10 9 8 34 34 H 1.09007 * 109.47385 * 299.99764 * 11 10 9 35 35 H 1.09004 * 109.47441 * 59.99893 * 11 10 9 36 36 H 1.09010 * 109.46504 * 299.99502 * 12 11 10 37 37 H 1.08996 * 109.47566 * 59.99537 * 12 11 10 38 38 H 0.97003 * 119.99600 * 359.97438 * 15 13 12 39 39 H 1.09000 * 109.46560 * 299.99979 * 16 15 13 40 40 H 1.08996 * 109.47150 * 59.99505 * 16 15 13 41 41 H 0.97003 * 119.99826 * 180.02562 * 20 19 17 42 42 H 1.08007 * 120.02267 * 179.97438 * 25 8 7 43 43 H 1.08003 * 119.97413 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.4314 -1.9883 -1.7646 7 6 2.7706 -2.4843 -3.0085 8 6 2.9444 -1.6159 -4.0764 9 8 3.2844 -2.1008 -5.2996 10 6 3.4462 -3.5160 -5.4144 11 6 3.8263 -3.8707 -6.8533 12 6 3.9989 -5.3860 -6.9765 13 6 4.3740 -5.7354 -8.3936 14 8 4.4912 -4.8588 -9.2236 15 7 4.5791 -7.0219 -8.7388 16 6 4.9432 -7.3617 -10.1166 17 6 5.1145 -8.8540 -10.2375 18 1 4.9674 -9.4861 -9.3742 19 6 5.4591 -9.4124 -11.4501 20 7 5.6378 -8.6426 -12.5014 21 14 5.6722 -11.2621 -11.5999 22 1 4.3731 -11.8820 -11.9649 23 1 6.6765 -11.5611 -12.6521 24 1 6.1364 -11.8135 -10.3016 25 6 2.7710 -0.2517 -3.8934 26 6 2.4264 0.2387 -2.6489 27 1 -0.3633 -1.0167 -0.1497 28 1 -0.3633 0.6380 -0.8057 29 1 -0.3634 0.3787 0.9554 30 1 2.3011 -2.6633 -0.9318 31 1 2.9054 -3.5467 -3.1484 32 1 4.2344 -3.8476 -4.7386 33 1 2.5111 -4.0110 -5.1527 34 1 3.0384 -3.5391 -7.5297 35 1 4.7617 -3.3757 -7.1147 36 1 4.7867 -5.7180 -6.3002 37 1 3.0635 -5.8807 -6.7153 38 1 4.4857 -7.7230 -8.0749 39 1 4.1552 -7.0300 -10.7928 40 1 5.8784 -6.8666 -10.3779 41 1 5.8799 -9.0355 -13.3546 42 1 2.9062 0.4263 -4.7232 43 1 2.2908 1.3007 -2.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427620579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:28 Heat of formation + Delta-G solvation = -161.657915 kcal Electronic energy + Delta-G solvation = -25370.749746 eV Core-core repulsion = 21314.145494 eV Total energy + Delta-G solvation = -4056.604252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.30244 -40.53554 -38.67425 -38.09248 -36.92174 -36.21342 -34.86854 -34.32871 -32.18961 -31.39416 -30.19842 -29.79849 -27.93453 -25.03873 -24.12733 -23.75443 -22.38707 -21.26905 -19.98935 -19.51533 -18.91032 -18.34471 -17.61539 -17.50093 -17.12864 -17.07683 -17.00900 -16.41051 -16.32285 -15.97229 -15.70872 -14.97627 -14.91389 -14.63240 -14.45406 -14.18717 -14.04845 -13.95459 -13.88490 -13.84501 -13.43200 -13.23860 -13.09793 -13.00768 -12.82516 -12.72238 -12.57186 -12.42937 -12.22971 -12.05253 -11.87532 -11.65873 -11.62374 -11.49408 -10.81198 -10.79260 -10.16301 -9.83248 -9.62056 -8.30082 -6.46985 -0.79566 -0.11732 0.23206 1.43124 1.45438 1.56679 1.78050 1.90015 2.02048 2.34293 2.40355 2.69235 3.05048 3.08732 3.23414 3.63887 3.77315 3.81600 3.90226 4.00489 4.13380 4.15899 4.22543 4.28597 4.36234 4.43825 4.48122 4.55743 4.67403 4.86387 4.93095 5.01430 5.03552 5.06488 5.12168 5.16511 5.23086 5.23706 5.48602 5.61949 5.69433 5.84294 6.26925 6.64811 6.91334 7.23019 7.51505 8.82114 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.036714 B = 0.001384 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.474625 B =20223.520361 C =20750.313573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.627 4.627 2 S 2.512 3.488 3 O -0.980 6.980 4 O -0.979 6.979 5 C -0.706 4.706 6 C 0.008 3.992 7 C -0.234 4.234 8 C 0.169 3.831 9 O -0.328 6.328 10 C 0.059 3.941 11 C -0.100 4.100 12 C -0.119 4.119 13 C 0.490 3.510 14 O -0.609 6.609 15 N -0.708 5.708 16 C 0.263 3.737 17 C -0.557 4.557 18 H 0.086 0.914 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.986 3.014 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.254 1.254 25 C -0.190 4.190 26 C 0.007 3.993 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.411 0.589 39 H -0.014 1.014 40 H -0.015 1.015 41 H 0.268 0.732 42 H 0.144 0.856 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.758 14.202 29.374 35.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.696 3.304 3 O -0.977 6.977 4 O -0.976 6.976 5 C -0.792 4.792 6 C -0.010 4.010 7 C -0.253 4.253 8 C 0.122 3.878 9 O -0.241 6.241 10 C -0.015 4.015 11 C -0.138 4.138 12 C -0.159 4.159 13 C 0.278 3.722 14 O -0.492 6.492 15 N -0.358 5.358 16 C 0.140 3.860 17 C -0.594 4.594 18 H 0.104 0.896 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.809 3.191 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.178 1.178 25 C -0.209 4.209 26 C -0.011 4.011 27 H 0.171 0.829 28 H 0.170 0.830 29 H 0.169 0.831 30 H 0.180 0.820 31 H 0.178 0.822 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.247 0.753 39 H 0.004 0.996 40 H 0.003 0.997 41 H 0.077 0.923 42 H 0.162 0.838 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.979 15.136 29.040 35.227 hybrid contribution 0.078 -1.273 -1.479 1.953 sum -12.901 13.863 27.561 33.440 Atomic orbital electron populations 1.30053 1.19828 1.14260 1.13887 1.04621 0.79773 0.72946 0.73076 1.93533 1.79702 1.38102 1.86408 1.93532 1.79686 1.62349 1.62037 1.30515 1.23214 1.03054 1.22464 1.21040 0.89162 0.93574 0.97242 1.21693 1.09078 1.01436 0.93116 1.19597 0.89986 0.93919 0.84296 1.86102 1.82691 1.26572 1.28696 1.23046 1.03312 0.77558 0.97557 1.21130 1.02724 0.94866 0.95115 1.21505 1.06441 0.96504 0.91418 1.21616 0.76364 0.82143 0.92074 1.90657 1.54505 1.49126 1.54869 1.46211 1.68619 1.07985 1.12954 1.18539 0.92895 0.95484 0.79071 1.21645 1.49054 0.91624 0.97116 0.89583 1.26091 0.94120 1.04546 0.94958 1.70145 1.47337 1.38074 1.01506 0.85138 0.78090 0.77336 0.78536 1.19586 1.21122 1.17803 1.20818 1.07611 0.92968 0.99495 1.20970 0.89762 1.00408 0.89999 0.82861 0.82951 0.83078 0.82032 0.82213 0.89326 0.88820 0.92023 0.92284 0.85486 0.85255 0.75320 0.99606 0.99673 0.92291 0.83811 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.12 10.80 113.37 1.22 1.10 16 2 S 2.51 26.53 5.80 -56.49 -0.33 26.20 16 3 O -0.98 -17.56 17.12 -127.65 -2.19 -19.75 16 4 O -0.98 -17.19 17.11 -127.65 -2.18 -19.37 16 5 C -0.71 -9.13 5.66 22.28 0.13 -9.00 16 6 C 0.01 0.11 9.46 22.26 0.21 0.32 16 7 C -0.23 -3.26 9.04 22.37 0.20 -3.06 16 8 C 0.17 3.05 6.69 22.51 0.15 3.20 16 9 O -0.33 -6.75 10.14 -92.41 -0.94 -7.68 16 10 C 0.06 0.91 4.74 71.98 0.34 1.25 16 11 C -0.10 -2.25 4.87 30.59 0.15 -2.10 16 12 C -0.12 -2.51 5.70 29.85 0.17 -2.33 16 13 C 0.49 18.27 7.83 87.66 0.69 18.96 16 14 O -0.61 -29.57 15.98 -3.03 -0.05 -29.62 16 15 N -0.71 -28.37 5.55 -466.79 -2.59 -30.96 16 16 C 0.26 14.27 5.43 85.63 0.46 14.74 16 17 C -0.56 -29.77 9.28 25.60 0.24 -29.53 16 18 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 19 C 0.00 0.13 5.46 84.65 0.46 0.59 16 20 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 21 Si 0.99 41.65 29.54 68.60 2.03 43.68 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 25 C -0.19 -3.19 9.99 22.36 0.22 -2.96 16 26 C 0.01 0.10 9.46 22.25 0.21 0.31 16 27 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.15 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.15 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.16 1.37 7.56 -2.91 -0.02 1.35 16 31 H 0.16 1.42 6.30 -2.91 -0.02 1.40 16 32 H 0.09 1.01 7.66 -2.39 -0.02 0.99 16 33 H 0.09 0.97 7.66 -2.39 -0.02 0.95 16 34 H 0.06 1.64 8.10 -2.38 -0.02 1.62 16 35 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 36 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.41 13.01 8.32 -92.71 -0.77 12.24 16 39 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 40 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 43 H 0.16 1.61 7.57 -2.91 -0.02 1.59 16 Total: -1.00 -89.05 382.47 -0.84 -89.90 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.26 Total: 11.87 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 4.86 Total: -8.52 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -2.30 Total: -86.70 kcal Atomic # 8 Polarization: -71.07 SS G_CDS: -5.36 Total: -76.43 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 26.53 SS G_CDS: -0.33 Total: 26.20 kcal Total: -89.05 -0.84 -89.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427620579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.760 kcal (2) G-P(sol) polarization free energy of solvation -89.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds