Wall clock time and date at job start Sat Apr 11 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35897 * 117.00172 * 2 1 4 4 C 1.38770 * 120.03013 * 0.27456 * 3 2 1 5 5 C 1.38174 * 120.05672 * 180.27489 * 4 3 2 6 6 C 1.38178 * 120.10792 * 359.72909 * 5 4 3 7 7 C 1.38771 * 120.05480 * 359.97438 * 6 5 4 8 8 O 1.35891 * 120.02933 * 180.02562 * 7 6 5 9 9 C 1.42908 * 116.99749 * 359.97438 * 8 7 6 10 10 C 1.38634 * 119.94424 * 0.02562 * 7 6 5 11 11 S 1.76205 * 120.05190 * 179.97438 * 10 7 6 12 12 O 1.42098 * 106.40506 * 336.45837 * 11 10 7 13 13 O 1.42103 * 106.40131 * 203.53836 * 11 10 7 14 14 N 1.65603 * 107.21955 * 90.00293 * 11 10 7 15 15 C 1.46504 * 120.00079 * 64.99172 * 14 11 10 16 16 C 1.52997 * 109.46911 * 159.11900 * 15 14 11 17 17 C 1.50701 * 115.55203 * 294.33714 * 16 15 14 18 18 H 1.07998 * 119.99968 * 95.26829 * 17 16 15 19 19 C 1.37872 * 119.99807 * 274.98661 * 17 16 15 20 20 N 1.31516 * 120.00444 * 355.56294 * 19 17 16 21 21 Si 1.86800 * 120.00144 * 175.55834 * 19 17 16 22 22 H 1.48494 * 109.47424 * 90.00313 * 21 19 17 23 23 H 1.48505 * 109.47316 * 210.00826 * 21 19 17 24 24 H 1.48506 * 109.46731 * 330.00111 * 21 19 17 25 25 C 1.53002 * 117.49772 * 80.00519 * 16 15 14 26 26 C 1.53000 * 117.49859 * 148.66382 * 16 15 14 27 27 H 1.08995 * 109.47283 * 59.99518 * 1 2 3 28 28 H 1.08999 * 109.47409 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46754 * 299.99724 * 1 2 3 30 30 H 1.08002 * 119.97064 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.94675 * 179.75753 * 5 4 3 32 32 H 1.07996 * 119.97115 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.46925 * 299.99879 * 9 8 7 34 34 H 1.08994 * 109.46991 * 60.00318 * 9 8 7 35 35 H 1.08997 * 109.46851 * 180.02562 * 9 8 7 36 36 H 0.96997 * 119.99722 * 245.00326 * 14 11 10 37 37 H 1.09004 * 109.46899 * 39.12626 * 15 14 11 38 38 H 1.08995 * 109.47674 * 279.12468 * 15 14 11 39 39 H 0.96995 * 120.00665 * 184.99911 * 20 19 17 40 40 H 1.08995 * 117.50130 * 215.00174 * 25 16 15 41 41 H 1.09004 * 117.49878 * 0.02562 * 25 16 15 42 42 H 1.09001 * 117.49766 * 359.97438 * 26 16 15 43 43 H 1.09000 * 117.50387 * 144.97832 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2908 2.3751 0.0058 5 6 1.9175 3.6065 0.0000 6 6 3.2972 3.6820 -0.0058 7 6 4.0569 2.5207 -0.0054 8 8 5.4137 2.5956 -0.0106 9 6 5.9913 3.9027 -0.0169 10 6 3.4304 1.2840 0.0004 11 16 4.3921 -0.1924 0.0003 12 8 5.6561 0.1520 -0.5502 13 8 3.5617 -1.2122 -0.5381 14 7 4.6661 -0.5991 1.5820 15 6 3.5449 -0.9770 2.4460 16 6 4.0679 -1.7819 3.6374 17 6 4.6688 -3.1228 3.3024 18 1 5.7361 -3.2178 3.1682 19 6 3.8564 -4.2292 3.1730 20 7 2.5696 -4.1337 3.4270 21 14 4.5836 -5.8642 2.6366 22 1 5.0159 -6.6300 3.8331 23 1 3.5590 -6.6420 1.8945 24 1 5.7539 -5.6202 1.7556 25 6 4.6842 -1.0024 4.8007 26 6 3.3103 -1.6581 4.9608 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2123 2.3186 0.0107 31 1 1.3281 4.5114 0.0006 32 1 3.7848 4.6457 -0.0107 33 1 5.6648 4.4398 -0.9075 34 1 5.6714 4.4456 0.8725 35 1 7.0780 3.8197 -0.0211 36 1 5.5689 -0.5871 1.9365 37 1 2.8383 -1.5837 1.8797 38 1 3.0447 -0.0781 2.8063 39 1 2.0110 -4.9263 3.4066 40 1 5.5242 -1.4593 5.3238 41 1 4.7167 0.0840 4.7175 42 1 2.4395 -1.0027 4.9829 43 1 3.2461 -2.5464 5.5892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429983214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:10 Heat of formation + Delta-G solvation = -109.569489 kcal Electronic energy + Delta-G solvation = -29222.594822 eV Core-core repulsion = 25168.249294 eV Total energy + Delta-G solvation = -4054.345528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57291 -40.24872 -38.76468 -37.93912 -37.46345 -36.71969 -34.82067 -33.86668 -32.45333 -30.62910 -28.75727 -27.82155 -27.65223 -26.58748 -24.41581 -22.88864 -22.85431 -21.17210 -20.58506 -19.75215 -18.68060 -18.24706 -17.96132 -17.73724 -17.43604 -16.97639 -16.67357 -16.50846 -16.43864 -15.91017 -15.76714 -15.63583 -15.17557 -14.72399 -14.26396 -14.01554 -13.83606 -13.75385 -13.61110 -13.14019 -12.98678 -12.93332 -12.85314 -12.82669 -12.79740 -12.73943 -12.43347 -12.41921 -12.35906 -11.95304 -11.70220 -11.45556 -11.31238 -10.96529 -10.36232 -10.23423 -10.16220 -9.87820 -9.20486 -8.05807 -6.15887 -0.43746 -0.11962 0.32708 1.38352 1.43646 1.50809 1.85298 2.18039 2.44558 2.51118 2.57568 2.91279 3.22946 3.40526 3.56496 3.79634 3.94936 4.11715 4.14571 4.29720 4.31898 4.38554 4.39085 4.41825 4.49083 4.59850 4.65050 4.70223 4.74982 4.76255 4.76838 4.98042 5.05916 5.07896 5.27865 5.33459 5.39223 5.43528 5.68686 5.78265 5.84471 6.18478 6.25251 6.29849 6.46044 6.88795 7.51302 9.01432 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.004520 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.253807 B = 6193.003400 C = 6628.303023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.237 3.763 4 C -0.269 4.269 5 C 0.022 3.978 6 C -0.266 4.266 7 C 0.242 3.758 8 O -0.320 6.320 9 C 0.010 3.990 10 C -0.768 4.768 11 S 2.704 3.296 12 O -0.983 6.983 13 O -0.987 6.987 14 N -1.095 6.095 15 C 0.183 3.817 16 C 0.003 3.997 17 C -0.503 4.503 18 H 0.051 0.949 19 C 0.028 3.972 20 N -0.901 5.901 21 Si 0.934 3.066 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.183 4.183 26 C -0.147 4.147 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.172 0.828 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.417 0.583 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.259 0.741 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 21.733 -5.438 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.188 3.812 4 C -0.288 4.288 5 C 0.004 3.996 6 C -0.286 4.286 7 C 0.193 3.807 8 O -0.232 6.232 9 C -0.084 4.084 10 C -0.859 4.859 11 S 2.796 3.204 12 O -0.974 6.974 13 O -0.977 6.977 14 N -0.855 5.855 15 C 0.057 3.943 16 C 0.001 3.999 17 C -0.541 4.541 18 H 0.069 0.931 19 C -0.173 4.173 20 N -0.538 5.538 21 Si 0.761 3.239 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.220 4.220 26 C -0.186 4.186 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.184 0.816 31 H 0.199 0.801 32 H 0.189 0.811 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.135 0.865 36 H 0.252 0.748 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.661 20.800 -6.314 22.043 hybrid contribution 0.088 -0.724 0.216 0.760 sum -3.573 20.076 -6.099 21.284 Atomic orbital electron populations 1.23526 0.75389 1.05707 1.03479 1.86397 1.24583 1.26133 1.86078 1.18426 0.89669 0.86407 0.86747 1.21611 1.01821 0.91352 1.14039 1.21518 0.93698 0.98211 0.86176 1.21612 0.95513 0.97513 1.13913 1.18283 0.83432 0.92259 0.86771 1.86326 1.16177 1.34420 1.86266 1.23599 1.00370 0.80910 1.03502 1.29028 1.04887 1.17464 1.34550 1.01090 0.72778 0.73817 0.72685 1.93506 1.41718 1.85159 1.76968 1.93541 1.70249 1.56400 1.77536 1.55046 1.16487 1.83743 1.30228 1.20521 0.86417 0.95498 0.91870 1.19061 1.00387 0.94129 0.86325 1.20643 0.92882 0.92567 1.48031 0.93111 1.25558 0.95235 1.01474 0.95024 1.70048 1.05064 1.29471 1.49262 0.85920 0.78299 0.81052 0.78674 1.19515 1.21190 1.20043 1.23013 0.96275 0.97932 1.04792 1.22393 0.93545 1.00387 1.02273 0.89729 0.87677 0.90144 0.81590 0.80127 0.81055 0.90252 0.90018 0.86529 0.74844 0.93298 0.93477 0.93182 0.90329 0.88816 0.90442 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -11.24 8.32 -71.59 -0.60 -11.84 16 3 C 0.24 7.47 6.63 22.49 0.15 7.61 16 4 C -0.27 -5.70 9.04 22.38 0.20 -5.50 16 5 C 0.02 0.35 10.04 22.24 0.22 0.57 16 6 C -0.27 -5.09 9.04 22.38 0.20 -4.89 16 7 C 0.24 6.96 6.63 22.49 0.15 7.10 16 8 O -0.32 -9.23 8.33 -71.56 -0.60 -9.83 16 9 C 0.01 0.15 9.81 113.37 1.11 1.26 16 10 C -0.77 -26.89 5.97 22.46 0.13 -26.76 16 11 S 2.70 116.12 5.58 -56.49 -0.32 115.80 16 12 O -0.98 -44.01 16.02 -119.44 -1.91 -45.92 16 13 O -0.99 -49.61 15.41 -119.42 -1.84 -51.45 16 14 N -1.10 -46.81 5.88 -187.49 -1.10 -47.91 16 15 C 0.18 8.42 6.09 86.38 0.53 8.95 16 16 C 0.00 0.14 1.49 -52.93 -0.08 0.06 16 17 C -0.50 -28.03 8.75 25.60 0.22 -27.81 16 18 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 19 C 0.03 1.58 5.43 84.65 0.46 2.04 16 20 N -0.90 -52.35 12.65 21.45 0.27 -52.07 16 21 Si 0.93 45.74 29.54 68.60 2.03 47.77 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 25 C -0.18 -7.53 9.96 30.62 0.30 -7.23 16 26 C -0.15 -6.75 9.15 30.62 0.28 -6.47 16 27 H 0.08 1.41 7.67 -2.39 -0.02 1.39 16 28 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.08 1.46 7.65 -2.39 -0.02 1.44 16 30 H 0.17 2.39 6.29 -2.91 -0.02 2.37 16 31 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.17 1.90 6.29 -2.91 -0.02 1.89 16 33 H 0.08 0.90 7.66 -2.39 -0.02 0.88 16 34 H 0.08 0.90 7.66 -2.39 -0.02 0.88 16 35 H 0.12 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.42 16.77 8.70 -96.75 -0.84 15.93 16 37 H 0.05 2.59 7.64 -2.38 -0.02 2.57 16 38 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 39 H 0.26 14.45 8.32 -92.71 -0.77 13.68 16 40 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -80.49 371.60 1.13 -79.35 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.20 Total: 25.74 kcal Atomic # 6 Polarization: -54.64 SS G_CDS: 5.00 Total: -49.64 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -0.83 Total: -99.98 kcal Atomic # 8 Polarization: -114.09 SS G_CDS: -4.95 Total: -119.04 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 116.12 SS G_CDS: -0.32 Total: 115.80 kcal Total: -80.49 1.13 -79.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429983214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.216 kcal (2) G-P(sol) polarization free energy of solvation -80.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds