Wall clock time and date at job start Sat Apr 11 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38797 * 119.90119 * 2 1 4 4 N 1.31759 * 120.12956 * 179.97438 * 3 2 1 5 5 C 1.33059 * 119.92254 * 0.02739 * 4 3 2 6 6 C 1.48047 * 120.09925 * 179.97438 * 5 4 3 7 7 O 1.21436 * 120.00067 * 179.97438 * 6 5 4 8 8 O 1.34679 * 119.99936 * 359.97438 * 6 5 4 9 9 C 1.45194 * 117.00297 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47714 * 180.02562 * 9 8 6 11 11 O 1.21282 * 119.99227 * 4.97146 * 10 9 8 12 12 N 1.34775 * 120.00288 * 184.97834 * 10 9 8 13 13 C 1.37136 * 119.99820 * 4.58179 * 12 10 9 14 14 H 1.07993 * 120.00095 * 311.70385 * 13 12 10 15 15 C 1.38886 * 119.99831 * 131.71184 * 13 12 10 16 16 N 1.31422 * 120.00133 * 352.01784 * 15 13 12 17 17 Si 1.86799 * 120.00191 * 172.02044 * 15 13 12 18 18 H 1.48496 * 109.47161 * 89.99615 * 17 15 13 19 19 H 1.48494 * 109.47622 * 209.99824 * 17 15 13 20 20 H 1.48498 * 109.46962 * 329.99965 * 17 15 13 21 21 C 1.39785 * 119.99727 * 184.58459 * 12 10 9 22 22 C 1.38958 * 120.07822 * 172.06578 * 21 12 10 23 23 C 1.38081 * 119.92495 * 180.22795 * 22 21 12 24 24 C 1.38311 * 120.07895 * 359.47283 * 23 22 21 25 25 C 1.38312 * 120.15039 * 0.55122 * 24 23 22 26 26 C 1.38082 * 120.07793 * 359.70187 * 25 24 23 27 27 C 1.39439 * 119.80292 * 0.24493 * 5 4 3 28 28 N 1.32103 * 119.90214 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46988 * 89.99927 * 1 2 3 30 30 H 1.09006 * 109.46640 * 209.99952 * 1 2 3 31 31 H 1.08998 * 109.47070 * 329.99608 * 1 2 3 32 32 H 1.08007 * 119.93988 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47308 * 59.99870 * 9 8 6 34 34 H 1.09004 * 109.47262 * 300.00269 * 9 8 6 35 35 H 0.96995 * 120.00400 * 185.01244 * 16 15 13 36 36 H 1.08006 * 120.04103 * 359.94868 * 22 21 12 37 37 H 1.08005 * 119.96484 * 179.74116 * 23 22 21 38 38 H 1.07994 * 119.92907 * 180.25435 * 24 23 22 39 39 H 1.08004 * 119.95984 * 179.72482 * 25 24 23 40 40 H 1.08002 * 120.03388 * 180.02562 * 26 25 24 41 41 H 1.08008 * 120.06092 * 179.74737 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2032 0.0000 4 7 3.5165 1.2085 0.0005 5 6 4.1849 0.0579 0.0005 6 6 5.6653 0.0592 0.0005 7 8 6.2735 -0.9919 0.0009 8 8 6.3377 1.2262 0.0000 9 6 7.7877 1.1516 -0.0006 10 6 8.3625 2.5447 -0.0004 11 8 7.6264 3.5043 0.0911 12 7 9.6943 2.7242 -0.1021 13 6 10.5184 1.6460 -0.3001 14 1 10.4120 0.7650 0.3152 15 6 11.4898 1.6873 -1.2919 16 7 11.5192 2.6896 -2.1415 17 14 12.7544 0.3184 -1.4183 18 1 12.2402 -0.7495 -2.3129 19 1 14.0194 0.8627 -1.9736 20 1 13.0088 -0.2465 -0.0688 21 6 10.2357 4.0094 -0.0058 22 6 11.6131 4.1821 0.0553 23 6 12.1443 5.4527 0.1552 24 6 11.3075 6.5536 0.1835 25 6 9.9360 6.3854 0.1234 26 6 9.3977 5.1173 0.0287 27 6 3.4867 -1.1491 -0.0053 28 7 2.1656 -1.1452 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6563 2.1371 -0.0004 33 1 8.1238 0.6196 -0.8905 34 1 8.1245 0.6199 0.8894 35 1 12.1505 2.6828 -2.8779 36 1 12.2674 3.3231 0.0292 37 1 13.2147 5.5874 0.2069 38 1 11.7257 7.5465 0.2576 39 1 9.2852 7.2470 0.1503 40 1 8.3267 4.9869 -0.0186 41 1 4.0250 -2.0855 -0.0094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007536712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:19 Heat of formation + Delta-G solvation = -11.460081 kcal Electronic energy + Delta-G solvation = -28361.758664 eV Core-core repulsion = 24208.516279 eV Total energy + Delta-G solvation = -4153.242385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59942 -40.18942 -39.51496 -37.29347 -36.16334 -35.07586 -34.97087 -33.23038 -32.01508 -29.96787 -29.59871 -29.00794 -27.29323 -25.27422 -24.95687 -24.18738 -22.02272 -21.39884 -21.04348 -19.60722 -18.59498 -18.09276 -17.61036 -16.67365 -16.51949 -16.19293 -15.98244 -15.56129 -15.34213 -15.23143 -14.96136 -14.45280 -14.25963 -13.64604 -13.32926 -13.17859 -13.05725 -12.91961 -12.83344 -12.66856 -12.33705 -12.20242 -11.93777 -11.79237 -11.53457 -11.49641 -11.35821 -11.05076 -10.87747 -10.82029 -10.52131 -10.40162 -10.06268 -9.61334 -9.46987 -9.40989 -8.83257 -8.23004 -7.78119 -6.93604 -6.41414 -4.55213 -0.02093 0.73020 2.28336 2.36980 2.42630 2.58036 3.00327 3.09556 3.12179 3.40959 3.58239 3.62960 3.72533 3.91283 4.00164 4.31278 4.52297 4.63080 4.69421 4.96067 5.08302 5.11057 5.12846 5.22888 5.46679 5.51901 5.65073 5.81296 5.88572 5.91845 6.02820 6.16883 6.43246 6.69089 6.72582 6.81142 6.86900 7.09914 7.18912 7.28853 7.48935 7.60539 7.62613 7.70705 7.76901 7.99531 8.38972 8.75254 9.11579 9.48077 10.41235 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.002866 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.731264 B = 9768.379637 C =11482.316343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.105 3.895 3 C 0.050 3.950 4 N -0.376 5.376 5 C 0.040 3.960 6 C 0.525 3.475 7 O -0.495 6.495 8 O -0.309 6.309 9 C 0.067 3.933 10 C 0.490 3.510 11 O -0.542 6.542 12 N -0.377 5.377 13 C -0.382 4.382 14 H 0.097 0.903 15 C 0.056 3.944 16 N -0.835 5.835 17 Si 0.919 3.081 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.264 1.264 21 C 0.190 3.810 22 C -0.095 4.095 23 C -0.123 4.123 24 C -0.171 4.171 25 C -0.120 4.120 26 C -0.186 4.186 27 C 0.122 3.878 28 N -0.443 5.443 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.277 0.723 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.173 0.827 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.096 -4.279 3.139 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.037 4.037 3 C -0.113 4.113 4 N -0.093 5.093 5 C -0.099 4.099 6 C 0.366 3.634 7 O -0.383 6.383 8 O -0.222 6.222 9 C -0.009 4.009 10 C 0.280 3.720 11 O -0.425 6.425 12 N -0.086 5.086 13 C -0.508 4.508 14 H 0.115 0.885 15 C -0.155 4.155 16 N -0.466 5.466 17 Si 0.743 3.257 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.188 1.188 21 C 0.093 3.907 22 C -0.116 4.116 23 C -0.142 4.142 24 C -0.191 4.191 25 C -0.139 4.139 26 C -0.206 4.206 27 C -0.037 4.037 28 N -0.158 5.158 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.197 0.803 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.189 0.811 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.043 -4.094 3.031 14.938 hybrid contribution 1.167 -0.700 -0.420 1.424 sum -12.876 -4.794 2.611 13.985 Atomic orbital electron populations 1.20788 0.86991 1.04477 1.04004 1.22800 0.99012 0.89795 0.92054 1.23860 0.90058 0.99599 0.97828 1.68559 1.08802 1.28167 1.03735 1.21131 0.92690 0.91370 1.04720 1.20450 0.86924 0.82528 0.73503 1.90872 1.68908 1.32761 1.45718 1.86647 1.21830 1.31676 1.82039 1.22751 0.74994 0.97861 1.05304 1.20065 0.82825 0.89226 0.79872 1.90274 1.59466 1.40564 1.52178 1.40844 1.03602 1.05553 1.58585 1.19448 1.16342 0.95478 1.19557 0.88495 1.25571 0.98411 0.97108 0.94365 1.69985 1.35073 1.29332 1.12253 0.86048 0.79775 0.80488 0.79365 1.19664 1.20302 1.18788 1.18032 0.92405 0.84352 0.95898 1.20773 0.93871 0.96800 1.00118 1.20712 0.98251 0.92690 1.02562 1.20775 0.93971 0.97420 1.06892 1.20842 0.94506 0.96582 1.01990 1.22657 1.03663 0.90912 1.03360 1.23835 0.90039 0.98831 0.91031 1.68537 1.07802 1.28919 1.10583 0.89300 0.89731 0.89609 0.80300 0.87354 0.88552 0.91257 0.85776 0.87804 0.88182 0.87693 0.81105 0.79619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.19 36.01 0.37 -0.13 16 2 C 0.11 0.94 6.79 -82.27 -0.56 0.38 16 3 C 0.05 0.50 10.88 -17.38 -0.19 0.31 16 4 N -0.38 -5.37 10.28 -9.62 -0.10 -5.47 16 5 C 0.04 0.57 6.75 -82.86 -0.56 0.01 16 6 C 0.52 8.92 7.95 34.75 0.28 9.20 16 7 O -0.49 -8.68 16.14 -19.22 -0.31 -8.99 16 8 O -0.31 -6.08 9.59 -47.10 -0.45 -6.53 16 9 C 0.07 1.35 4.72 36.01 0.17 1.52 16 10 C 0.49 11.68 7.65 -10.99 -0.08 11.60 16 11 O -0.54 -13.79 12.92 -14.05 -0.18 -13.97 16 12 N -0.38 -9.38 2.70 -58.98 -0.16 -9.54 16 13 C -0.38 -9.18 7.65 -14.94 -0.11 -9.29 16 14 H 0.10 2.17 7.55 -52.49 -0.40 1.78 16 15 C 0.06 1.35 3.62 -17.49 -0.06 1.28 16 16 N -0.84 -21.43 11.12 55.49 0.62 -20.81 16 17 Si 0.92 18.40 29.56 -169.99 -5.03 13.38 16 18 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 C 0.19 4.77 5.72 -83.70 -0.48 4.29 16 22 C -0.09 -2.25 7.56 -39.37 -0.30 -2.55 16 23 C -0.12 -2.59 10.04 -39.61 -0.40 -2.99 16 24 C -0.17 -3.43 10.04 -39.53 -0.40 -3.83 16 25 C -0.12 -2.54 10.04 -39.61 -0.40 -2.94 16 26 C -0.19 -4.49 9.04 -39.37 -0.36 -4.85 16 27 C 0.12 1.44 10.77 -16.98 -0.18 1.26 16 28 N -0.44 -4.86 10.41 -8.93 -0.09 -4.95 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.18 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.11 2.16 7.88 -51.93 -0.41 1.75 16 34 H 0.10 1.76 8.08 -51.93 -0.42 1.34 16 35 H 0.28 6.73 8.32 -40.82 -0.34 6.39 16 36 H 0.12 3.02 5.69 -52.48 -0.30 2.72 16 37 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 40 H 0.17 4.30 4.56 -56.09 -0.26 4.05 16 41 H 0.19 1.88 7.65 -52.48 -0.40 1.48 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -31.21 359.80 -7.82 -39.02 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.27 Total: 9.16 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -3.26 Total: 3.28 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.27 Total: -40.78 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.94 Total: -29.49 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.21 -7.82 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007536712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.564 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds