Wall clock time and date at job start Sat Apr 11 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37967 * 119.99985 * 2 1 4 4 S 1.72022 * 127.36464 * 0.02562 * 3 2 1 5 5 N 1.69446 * 96.11544 * 179.97438 * 4 3 2 6 6 C 1.29333 * 108.11778 * 359.74618 * 5 4 3 7 7 C 1.50704 * 121.48568 * 180.24027 * 6 5 4 8 8 C 1.39188 * 127.36955 * 180.02562 * 3 2 1 9 9 C 1.46535 * 123.26126 * 359.97438 * 8 3 2 10 10 O 1.21625 * 120.00274 * 89.99821 * 9 8 3 11 11 O 1.34861 * 119.99653 * 269.99870 * 9 8 3 12 12 C 1.45200 * 116.99690 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47726 * 30.00184 * 12 11 9 14 14 C 1.53003 * 109.47344 * 269.99831 * 12 11 9 15 15 C 1.50704 * 109.46936 * 150.00018 * 12 11 9 16 16 O 1.21274 * 119.99921 * 16.02458 * 15 12 11 17 17 N 1.34777 * 120.00026 * 196.02251 * 15 12 11 18 18 C 1.46505 * 120.00097 * 5.36531 * 17 15 12 19 19 C 1.46497 * 120.00271 * 185.37023 * 17 15 12 20 20 C 1.50697 * 109.47565 * 89.99671 * 19 17 15 21 21 H 1.08002 * 120.00096 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00044 * 180.02562 * 20 19 17 23 23 N 1.31519 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00189 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46850 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47266 * 119.99652 * 24 22 20 27 27 H 1.48492 * 109.47081 * 239.99812 * 24 22 20 28 28 H 1.09004 * 109.46925 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47170 * 299.99902 * 1 2 3 30 30 H 1.08999 * 109.47079 * 60.00245 * 1 2 3 31 31 H 0.97003 * 119.99649 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47063 * 270.22395 * 7 6 5 33 33 H 1.08998 * 109.47269 * 30.22724 * 7 6 5 34 34 H 1.08997 * 109.46820 * 150.23078 * 7 6 5 35 35 H 1.08996 * 109.47038 * 306.14206 * 14 12 11 36 36 H 1.09003 * 109.47065 * 186.13556 * 14 12 11 37 37 H 1.09006 * 109.46938 * 66.14084 * 14 12 11 38 38 H 1.09000 * 109.47126 * 84.82209 * 18 17 15 39 39 H 1.08997 * 109.47350 * 204.82615 * 18 17 15 40 40 H 1.09000 * 109.46993 * 324.82289 * 18 17 15 41 41 H 1.09000 * 109.47601 * 210.00241 * 19 17 15 42 42 H 1.09006 * 109.46411 * 329.99554 * 19 17 15 43 43 H 0.96999 * 119.99462 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1549 1.1948 0.0000 4 16 1.4928 2.7825 0.0006 5 7 2.9784 3.5976 0.0010 6 6 3.9222 2.7134 0.0061 7 6 5.3753 3.1132 0.0132 8 6 3.5353 1.3734 -0.0005 9 6 4.4895 0.2613 -0.0006 10 8 4.8851 -0.2005 -1.0539 11 8 4.9289 -0.2501 1.1674 12 6 5.8727 -1.3510 1.0913 13 1 6.4682 -1.2570 0.1832 14 6 5.1091 -2.6766 1.0656 15 6 6.7810 -1.3178 2.2934 16 8 6.4801 -0.6540 3.2627 17 7 7.9278 -2.0259 2.2912 18 6 8.3499 -2.7329 1.0794 19 6 8.7523 -2.0887 3.5005 20 6 8.3234 -3.2640 4.3405 21 1 7.5169 -3.9004 4.0072 22 6 8.9598 -3.5263 5.5352 23 7 9.9415 -2.7511 5.9414 24 14 8.4286 -4.9836 6.5761 25 1 7.3114 -5.6924 5.9019 26 1 9.5738 -5.9134 6.7472 27 1 7.9780 -4.5032 7.9070 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 5.7297 3.2130 -1.0127 33 1 5.4875 4.0659 0.5307 34 1 5.9596 2.3497 0.5267 35 1 4.4317 -2.7223 1.9182 36 1 5.8163 -3.5044 1.1185 37 1 4.5353 -2.7475 0.1415 38 1 8.8915 -2.0467 0.4284 39 1 8.9997 -3.5646 1.3517 40 1 7.4725 -3.1135 0.5566 41 1 9.7994 -2.2048 3.2209 42 1 8.6289 -1.1689 4.0724 43 1 10.3894 -2.9359 6.7817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057714639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:24 Heat of formation + Delta-G solvation = -73.744349 kcal Electronic energy + Delta-G solvation = -27779.793322 eV Core-core repulsion = 23759.294040 eV Total energy + Delta-G solvation = -4020.499283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.85751 -39.38141 -38.48363 -36.84555 -36.27967 -34.90615 -32.86388 -31.78438 -30.85978 -29.81624 -27.82029 -26.75235 -26.10149 -24.96104 -23.94824 -22.55792 -21.40934 -19.91241 -18.89177 -18.73585 -18.06561 -17.12883 -16.59464 -16.36150 -15.86178 -15.63956 -15.35998 -15.29715 -15.01011 -14.63447 -14.35848 -14.25130 -13.61319 -13.50493 -13.15240 -13.00859 -12.76571 -12.61610 -12.56736 -12.39037 -12.17664 -12.11672 -11.77362 -11.53871 -11.47943 -11.26466 -11.24226 -11.02935 -10.92789 -10.74777 -10.60189 -10.42274 -10.20684 -9.66986 -8.96657 -8.84156 -8.48297 -8.30348 -7.74373 -6.08972 -4.14365 0.60540 0.79979 1.54674 1.94911 2.04339 2.62983 2.72694 3.20991 3.26634 3.34676 3.38188 3.90284 4.34499 4.39841 4.58277 4.71188 4.79544 4.86244 4.93959 5.01294 5.07090 5.07602 5.16608 5.25712 5.39710 5.43137 5.49314 5.59304 5.66353 5.84207 5.93148 6.01683 6.09109 6.19264 6.31428 6.54176 6.67753 6.96391 7.37920 7.44330 7.66301 7.87117 8.16767 8.26784 8.81239 8.96318 9.50887 10.99169 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.002702 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.387028 B =10360.555286 C =10707.871230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.683 5.683 3 C 0.163 3.837 4 S 0.259 5.741 5 N -0.488 5.488 6 C 0.205 3.795 7 C -0.094 4.094 8 C -0.311 4.311 9 C 0.548 3.452 10 O -0.499 6.499 11 O -0.317 6.317 12 C 0.067 3.933 13 H 0.104 0.896 14 C -0.165 4.165 15 C 0.510 3.490 16 O -0.518 6.518 17 N -0.596 5.596 18 C 0.073 3.927 19 C 0.245 3.755 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.413 0.587 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.047 0.953 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.065 5.366 -16.394 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.312 5.312 3 C -0.076 4.076 4 S 0.405 5.595 5 N -0.309 5.309 6 C 0.029 3.971 7 C -0.156 4.156 8 C -0.334 4.334 9 C 0.388 3.612 10 O -0.386 6.386 11 O -0.232 6.232 12 C 0.008 3.992 13 H 0.121 0.879 14 C -0.222 4.222 15 C 0.294 3.706 16 O -0.394 6.394 17 N -0.330 5.330 18 C -0.071 4.071 19 C 0.127 3.873 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.531 5.531 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.250 0.750 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.523 7.317 -16.007 25.551 hybrid contribution 1.285 -2.815 0.542 3.141 sum -17.238 4.502 -15.465 23.592 Atomic orbital electron populations 1.21980 0.77451 1.04513 1.02680 1.43589 1.06757 1.04006 1.76844 1.23255 0.94244 0.95569 0.94507 1.84034 1.15606 0.87248 1.72659 1.76390 0.97550 1.24882 1.32126 1.20759 0.97698 0.86947 0.91715 1.20707 0.87053 1.03788 1.04030 1.18604 0.90156 0.93438 1.31152 1.20093 0.78630 0.80510 0.81984 1.90852 1.55418 1.59646 1.32709 1.86875 1.56142 1.47128 1.33071 1.22730 0.90464 0.85909 1.00118 0.87870 1.22171 1.01726 0.95164 1.03178 1.19733 0.82023 0.81130 0.87730 1.90706 1.72614 1.40891 1.35145 1.48079 1.21979 1.48433 1.14498 1.21836 1.00357 0.97558 0.87302 1.19375 0.89146 0.98621 0.80195 1.21458 1.18348 1.11944 1.05078 0.92334 1.24943 0.94924 0.96878 0.97339 1.69943 1.22962 1.38059 1.22179 0.86430 0.78423 0.82157 0.80334 1.19814 1.20919 1.20831 0.88977 0.91247 0.91394 0.74985 0.89250 0.89257 0.89930 0.90675 0.89300 0.91461 0.93360 0.90058 0.92314 0.94596 0.93543 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 10.74 59.85 0.64 0.99 16 2 N -0.68 -5.68 5.84 -66.56 -0.39 -6.07 16 3 C 0.16 1.82 7.31 -14.44 -0.11 1.71 16 4 S 0.26 2.66 23.02 -107.50 -2.47 0.18 16 5 N -0.49 -6.41 11.94 32.64 0.39 -6.02 16 6 C 0.21 2.76 6.75 -83.18 -0.56 2.19 16 7 C -0.09 -1.09 9.96 36.01 0.36 -0.73 16 8 C -0.31 -4.27 5.76 -105.74 -0.61 -4.88 16 9 C 0.55 8.29 6.04 34.07 0.21 8.50 16 10 O -0.50 -8.00 16.37 -19.36 -0.32 -8.31 16 11 O -0.32 -5.41 9.48 -47.46 -0.45 -5.86 16 12 C 0.07 1.10 2.15 -27.88 -0.06 1.04 16 13 H 0.10 1.55 6.32 -51.93 -0.33 1.22 16 14 C -0.17 -2.24 9.19 37.16 0.34 -1.90 16 15 C 0.51 10.84 6.95 -10.98 -0.08 10.76 16 16 O -0.52 -13.39 16.13 -13.54 -0.22 -13.61 16 17 N -0.60 -12.52 2.86 -182.95 -0.52 -13.04 16 18 C 0.07 1.13 9.79 59.85 0.59 1.72 16 19 C 0.25 6.33 5.18 -5.20 -0.03 6.30 16 20 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 21 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 24 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.41 3.36 8.56 -40.82 -0.35 3.01 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.04 7.40 -51.93 -0.38 0.66 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.16 6.33 -51.93 -0.33 0.83 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 40 H 0.06 0.75 4.92 -51.93 -0.26 0.50 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -35.89 382.69 -8.01 -43.91 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.79 Total: -0.23 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 0.28 Total: 12.31 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.21 Total: -50.62 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.99 Total: -27.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.47 Total: 0.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.89 -8.01 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057714639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.839 kcal (2) G-P(sol) polarization free energy of solvation -35.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds