Wall clock time and date at job start Sat Apr 11 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35252 * 126.70034 * 2 1 4 4 C 1.42015 * 103.95907 * 180.11561 * 3 2 1 5 5 N 1.39505 * 126.89245 * 179.88170 * 4 3 2 6 6 C 1.34776 * 120.00010 * 359.71344 * 5 4 3 7 7 O 1.21274 * 120.00028 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99763 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47233 * 325.00069 * 8 6 5 10 10 C 1.52999 * 109.46959 * 84.99965 * 8 6 5 11 11 S 1.81398 * 109.47123 * 205.00045 * 8 6 5 12 12 C 1.81399 * 103.00088 * 175.00090 * 11 8 6 13 13 C 1.50699 * 109.47054 * 179.97438 * 12 11 8 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99707 * 359.97438 * 15 13 12 17 17 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 18 18 C 1.50702 * 109.46904 * 89.99597 * 17 15 13 19 19 H 1.07993 * 120.00490 * 0.02562 * 18 17 15 20 20 C 1.37881 * 119.99735 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99825 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47614 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47277 * 119.99668 * 22 20 18 25 25 H 1.48506 * 109.47103 * 239.99349 * 22 20 18 26 26 N 1.30723 * 106.21325 * 359.62569 * 4 3 2 27 27 O 1.20908 * 111.47508 * 0.23709 * 26 4 3 28 28 H 1.09000 * 109.47470 * 180.33176 * 1 2 3 29 29 H 1.09009 * 109.47097 * 300.33210 * 1 2 3 30 30 H 1.09004 * 109.46963 * 60.32743 * 1 2 3 31 31 H 1.08005 * 128.01641 * 0.02562 * 3 2 1 32 32 H 0.97006 * 119.99936 * 179.70897 * 5 4 3 33 33 H 1.09001 * 109.46854 * 179.97438 * 10 8 6 34 34 H 1.09000 * 109.47435 * 299.99790 * 10 8 6 35 35 H 1.09002 * 109.47063 * 60.00001 * 10 8 6 36 36 H 1.09000 * 109.47070 * 300.00061 * 12 11 8 37 37 H 1.09001 * 109.46593 * 60.00058 * 12 11 8 38 38 H 1.09000 * 109.46769 * 90.00333 * 16 15 13 39 39 H 1.09002 * 109.46740 * 210.00435 * 16 15 13 40 40 H 1.09001 * 109.47266 * 330.00158 * 16 15 13 41 41 H 1.08991 * 109.47410 * 209.99714 * 17 15 13 42 42 H 1.09007 * 109.47039 * 329.99988 * 17 15 13 43 43 H 0.97004 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.0844 0.0000 4 6 3.6250 0.5354 -0.0028 5 7 4.8287 1.2407 -0.0062 6 6 4.8200 2.5884 -0.0129 7 8 3.7659 3.1880 -0.0165 8 6 6.1204 3.3502 -0.0160 9 1 6.8591 2.8105 0.5765 10 6 6.6247 3.4923 -1.4535 11 16 5.8582 4.9968 0.6984 12 6 7.5334 5.6907 0.7500 13 6 7.4835 7.0813 1.3286 14 8 6.4222 7.5575 1.6719 15 7 8.6181 7.7961 1.4637 16 6 9.8999 7.2211 1.0485 17 6 8.5696 9.1478 2.0267 18 6 8.7357 9.0749 3.5228 19 1 8.8648 8.1177 4.0059 20 6 8.7228 10.2305 4.2749 21 7 8.5660 11.3962 3.6867 22 14 8.9293 10.1402 6.1292 23 1 9.0880 8.7224 6.5413 24 1 10.1334 10.9107 6.5312 25 1 7.7301 10.7160 6.7894 26 7 3.4764 -0.7633 0.0041 27 8 2.3083 -1.0752 0.0058 28 1 -0.3634 -1.0276 0.0060 29 1 -0.3634 0.5190 0.8871 30 1 -0.3633 0.5088 -0.8929 31 1 2.0306 2.1263 0.0004 32 1 5.6719 0.7610 -0.0036 33 1 7.5650 4.0437 -1.4557 34 1 6.7823 2.5028 -1.8828 35 1 5.8860 4.0320 -2.0461 36 1 8.1687 5.0604 1.3722 37 1 7.9406 5.7323 -0.2603 38 1 10.0860 7.4657 0.0027 39 1 10.6991 7.6316 1.6656 40 1 9.8681 6.1381 1.1682 41 1 9.3736 9.7478 1.6007 42 1 7.6094 9.6059 1.7896 43 1 8.5573 12.2092 4.2158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073002359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:33 Heat of formation + Delta-G solvation = 5.553485 kcal Electronic energy + Delta-G solvation = -26202.098288 eV Core-core repulsion = 22185.037618 eV Total energy + Delta-G solvation = -4017.060670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.17836 -40.49821 -38.95491 -35.97900 -34.91972 -34.17378 -33.70292 -32.69943 -31.96945 -30.05515 -28.16061 -27.46027 -25.76211 -25.60329 -23.82993 -22.83032 -21.80768 -21.04116 -18.85026 -17.99969 -17.86414 -17.51886 -17.06754 -16.62820 -16.44856 -16.18297 -15.70078 -15.31756 -15.01610 -14.75247 -14.26142 -14.03533 -13.89787 -13.87121 -13.66261 -13.23181 -13.18747 -12.81879 -12.68514 -12.46563 -12.26305 -12.09369 -11.99290 -11.91616 -11.88838 -11.57552 -11.23375 -10.89708 -10.62717 -10.40574 -10.19111 -9.82535 -9.71884 -9.65739 -9.21994 -9.11895 -8.46734 -7.77523 -7.60384 -6.07511 -4.12472 1.02316 1.15802 1.64531 2.20014 2.36009 2.49750 2.81987 3.24173 3.28382 3.36618 3.40533 3.82072 3.85726 4.13422 4.38339 4.42266 4.51746 4.56983 4.73650 4.89330 4.93814 5.01710 5.03856 5.08141 5.16283 5.18722 5.27152 5.31484 5.44906 5.55628 5.61381 5.67196 5.81848 6.02509 6.10526 6.61344 6.95013 7.37974 7.44709 7.48818 7.88219 7.96675 8.18279 8.26830 8.82341 8.97322 9.52709 11.00670 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002002 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.860794 B =13983.826356 C =14684.039263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.227 4.227 4 C 0.250 3.750 5 N -0.630 5.630 6 C 0.548 3.452 7 O -0.484 6.484 8 C -0.117 4.117 9 H 0.111 0.889 10 C -0.143 4.143 11 S -0.096 6.096 12 C -0.140 4.140 13 C 0.521 3.479 14 O -0.519 6.519 15 N -0.597 5.597 16 C 0.082 3.918 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 N -0.392 5.392 27 O 0.096 5.904 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.192 0.808 32 H 0.419 0.581 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.364 -24.351 -12.282 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.250 4.250 4 C 0.001 3.999 5 N -0.282 5.282 6 C 0.333 3.667 7 O -0.355 6.355 8 C -0.249 4.249 9 H 0.129 0.871 10 C -0.202 4.202 11 S 0.130 5.870 12 C -0.291 4.291 13 C 0.305 3.695 14 O -0.395 6.395 15 N -0.330 5.330 16 C -0.062 4.062 17 C 0.127 3.873 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.208 1.208 26 N -0.108 5.108 27 O 0.035 5.965 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.209 0.791 32 H 0.256 0.744 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.809 -23.934 -11.721 27.771 hybrid contribution 1.871 -0.134 0.698 2.002 sum -5.938 -24.068 -11.022 27.130 Atomic orbital electron populations 1.20369 0.83612 1.04662 1.04507 1.24464 0.96545 0.85708 1.01911 1.22750 0.89224 1.02345 1.10657 1.20502 0.88410 0.88857 1.02149 1.42462 1.06245 1.06173 1.73362 1.19874 0.90962 0.80489 0.75353 1.90721 1.32059 1.67518 1.45160 1.23375 0.97653 1.00960 1.02928 0.87075 1.22040 1.02808 1.03162 0.92208 1.88278 1.08339 1.09176 1.81207 1.23806 0.99659 1.00194 1.05485 1.19304 0.84980 0.85313 0.79923 1.90737 1.28996 1.70418 1.49387 1.48096 1.05174 1.18497 1.61276 1.21676 0.87366 0.97760 0.99437 1.19353 0.98874 0.75779 0.93329 1.21448 1.50158 0.93140 0.91906 0.92379 1.24944 0.95036 0.95206 0.98959 1.69939 1.49804 0.97695 1.35804 0.86427 0.77704 0.78090 0.85107 1.19807 1.20958 1.20790 1.74030 0.97742 1.13036 1.26015 1.84795 1.10388 1.32406 1.68896 0.89801 0.88870 0.88934 0.79127 0.74371 0.90557 0.91484 0.90174 0.87666 0.87650 0.93530 0.90453 0.92630 0.94737 0.93624 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.45 36.00 0.38 0.06 16 2 C -0.02 -0.20 7.48 -35.37 -0.26 -0.46 16 3 C -0.23 -2.46 9.79 -39.20 -0.38 -2.84 16 4 C 0.25 2.82 8.18 -154.82 -1.27 1.55 16 5 N -0.63 -5.90 5.42 -11.43 -0.06 -5.97 16 6 C 0.55 6.14 6.92 -10.98 -0.08 6.06 16 7 O -0.48 -7.08 13.42 5.56 0.07 -7.01 16 8 C -0.12 -1.11 3.17 -27.88 -0.09 -1.20 16 9 H 0.11 0.75 8.14 -51.92 -0.42 0.32 16 10 C -0.14 -1.04 9.08 37.16 0.34 -0.70 16 11 S -0.10 -1.44 19.59 -107.50 -2.11 -3.55 16 12 C -0.14 -1.94 4.67 36.01 0.17 -1.77 16 13 C 0.52 10.63 7.69 -10.99 -0.08 10.54 16 14 O -0.52 -13.21 15.44 5.56 0.09 -13.12 16 15 N -0.60 -12.28 2.86 -182.95 -0.52 -12.80 16 16 C 0.08 1.19 10.24 59.85 0.61 1.80 16 17 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 18 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 22 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 N -0.39 -4.48 12.10 31.19 0.38 -4.11 16 27 O 0.10 0.98 11.19 17.04 0.19 1.17 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.19 2.22 6.22 -52.48 -0.33 1.89 16 32 H 0.42 2.62 8.82 -40.82 -0.36 2.26 16 33 H 0.08 0.48 6.92 -51.93 -0.36 0.12 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 1.20 7.40 -51.92 -0.38 0.82 16 37 H 0.11 1.13 7.11 -51.92 -0.37 0.76 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 40 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 41 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 42 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -37.39 381.44 -7.48 -44.86 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.86 Total: -2.12 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -1.12 Total: 5.80 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.53 Total: -48.62 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.35 Total: -18.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.11 Total: -3.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.39 -7.48 -44.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073002359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.415 kcal (2) G-P(sol) polarization free energy of solvation -37.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds