Wall clock time and date at job start Sat Apr 11 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35252 * 126.70034 * 2 1 4 4 C 1.42015 * 103.95907 * 180.11561 * 3 2 1 5 5 N 1.39505 * 126.89245 * 179.88170 * 4 3 2 6 6 C 1.34776 * 120.00010 * 359.71344 * 5 4 3 7 7 O 1.21274 * 120.00028 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99763 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47233 * 325.00069 * 8 6 5 10 10 C 1.52999 * 109.46959 * 84.99965 * 8 6 5 11 11 S 1.81398 * 109.47123 * 205.00045 * 8 6 5 12 12 C 1.81399 * 103.00088 * 175.00090 * 11 8 6 13 13 C 1.50699 * 109.47054 * 179.97438 * 12 11 8 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99707 * 359.97438 * 15 13 12 17 17 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 18 18 C 1.50702 * 109.46904 * 89.99597 * 17 15 13 19 19 H 1.07993 * 120.00490 * 0.02562 * 18 17 15 20 20 C 1.37881 * 119.99735 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99825 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47614 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47277 * 119.99668 * 22 20 18 25 25 H 1.48506 * 109.47103 * 239.99349 * 22 20 18 26 26 N 1.30723 * 106.21325 * 359.62569 * 4 3 2 27 27 O 1.20908 * 111.47508 * 0.23709 * 26 4 3 28 28 H 1.09000 * 109.47470 * 180.33176 * 1 2 3 29 29 H 1.09009 * 109.47097 * 300.33210 * 1 2 3 30 30 H 1.09004 * 109.46963 * 60.32743 * 1 2 3 31 31 H 1.08005 * 128.01641 * 0.02562 * 3 2 1 32 32 H 0.97006 * 119.99936 * 179.70897 * 5 4 3 33 33 H 1.09001 * 109.46854 * 179.97438 * 10 8 6 34 34 H 1.09000 * 109.47435 * 299.99790 * 10 8 6 35 35 H 1.09002 * 109.47063 * 60.00001 * 10 8 6 36 36 H 1.09000 * 109.47070 * 300.00061 * 12 11 8 37 37 H 1.09001 * 109.46593 * 60.00058 * 12 11 8 38 38 H 1.09000 * 109.46769 * 90.00333 * 16 15 13 39 39 H 1.09002 * 109.46740 * 210.00435 * 16 15 13 40 40 H 1.09001 * 109.47266 * 330.00158 * 16 15 13 41 41 H 1.08991 * 109.47410 * 209.99714 * 17 15 13 42 42 H 1.09007 * 109.47039 * 329.99988 * 17 15 13 43 43 H 0.97004 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.0844 0.0000 4 6 3.6250 0.5354 -0.0028 5 7 4.8287 1.2407 -0.0062 6 6 4.8200 2.5884 -0.0129 7 8 3.7659 3.1880 -0.0165 8 6 6.1204 3.3502 -0.0160 9 1 6.8591 2.8105 0.5765 10 6 6.6247 3.4923 -1.4535 11 16 5.8582 4.9968 0.6984 12 6 7.5334 5.6907 0.7500 13 6 7.4835 7.0813 1.3286 14 8 6.4222 7.5575 1.6719 15 7 8.6181 7.7961 1.4637 16 6 9.8999 7.2211 1.0485 17 6 8.5696 9.1478 2.0267 18 6 8.7357 9.0749 3.5228 19 1 8.8648 8.1177 4.0059 20 6 8.7228 10.2305 4.2749 21 7 8.5660 11.3962 3.6867 22 14 8.9293 10.1402 6.1292 23 1 9.0880 8.7224 6.5413 24 1 10.1334 10.9107 6.5312 25 1 7.7301 10.7160 6.7894 26 7 3.4764 -0.7633 0.0041 27 8 2.3083 -1.0752 0.0058 28 1 -0.3634 -1.0276 0.0060 29 1 -0.3634 0.5190 0.8871 30 1 -0.3633 0.5088 -0.8929 31 1 2.0306 2.1263 0.0004 32 1 5.6719 0.7610 -0.0036 33 1 7.5650 4.0437 -1.4557 34 1 6.7823 2.5028 -1.8828 35 1 5.8860 4.0320 -2.0461 36 1 8.1687 5.0604 1.3722 37 1 7.9406 5.7323 -0.2603 38 1 10.0860 7.4657 0.0027 39 1 10.6991 7.6316 1.6656 40 1 9.8681 6.1381 1.1682 41 1 9.3736 9.7478 1.6007 42 1 7.6094 9.6059 1.7896 43 1 8.5573 12.2092 4.2158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073002359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:33 Heat of formation + Delta-G solvation = -20.600080 kcal Electronic energy + Delta-G solvation = -26203.232392 eV Core-core repulsion = 22185.037618 eV Total energy + Delta-G solvation = -4018.194774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.96585 -41.36462 -40.56954 -36.83271 -36.63532 -34.92861 -34.75724 -34.36184 -32.74711 -31.52262 -29.16533 -28.70778 -27.25647 -26.34250 -24.80056 -24.60181 -22.58601 -21.86996 -20.35176 -18.79469 -18.72298 -18.63105 -18.48346 -17.95235 -17.86198 -17.30711 -16.80403 -16.66128 -16.51716 -15.93759 -15.56980 -15.03493 -14.76270 -14.57732 -14.39270 -14.35724 -14.04565 -13.88603 -13.79392 -13.56256 -13.47267 -13.34692 -13.16317 -12.99771 -12.86656 -12.82205 -12.73261 -12.51838 -12.28988 -12.21854 -11.69356 -11.28573 -10.80061 -10.73846 -10.66091 -10.44543 -10.02595 -9.46727 -8.75033 -8.23989 -6.38574 0.10664 0.32610 0.83429 1.35110 1.37372 1.38448 1.42479 1.49504 1.66728 1.73711 2.14600 2.29903 2.43756 3.05909 3.10755 3.37006 3.63848 3.73918 3.84832 3.92928 4.03137 4.06932 4.18707 4.31794 4.47054 4.63107 4.69740 4.70498 4.71742 4.74090 4.84895 4.96055 5.00448 5.11627 5.14213 5.21843 5.26084 5.53716 5.80502 5.92296 6.03835 6.64977 6.70212 6.73265 7.19284 7.25318 7.40939 8.83286 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002002 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.860794 B =13983.826356 C =14684.039263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.002 4.002 3 C -0.259 4.259 4 C 0.237 3.763 5 N -0.615 5.615 6 C 0.546 3.454 7 O -0.526 6.526 8 C -0.088 4.088 9 H 0.151 0.849 10 C -0.142 4.142 11 S -0.193 6.193 12 C -0.109 4.109 13 C 0.507 3.493 14 O -0.584 6.584 15 N -0.605 5.605 16 C 0.074 3.926 17 C 0.259 3.741 18 C -0.541 4.541 19 H 0.055 0.945 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.268 1.268 25 H -0.284 1.284 26 N -0.406 5.406 27 O 0.091 5.909 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.178 0.822 32 H 0.435 0.565 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.028 0.972 42 H -0.004 1.004 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.679 -27.387 -12.605 30.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 C -0.282 4.282 4 C -0.012 4.012 5 N -0.269 5.269 6 C 0.332 3.668 7 O -0.399 6.399 8 C -0.220 4.220 9 H 0.169 0.831 10 C -0.201 4.201 11 S 0.033 5.967 12 C -0.260 4.260 13 C 0.294 3.706 14 O -0.465 6.465 15 N -0.336 5.336 16 C -0.068 4.068 17 C 0.137 3.863 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.210 1.210 26 N -0.123 5.123 27 O 0.032 5.968 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.195 0.805 32 H 0.275 0.725 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.046 0.954 42 H 0.014 0.986 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.058 -27.033 -12.072 30.220 hybrid contribution 1.271 0.752 0.727 1.646 sum -4.787 -26.281 -11.345 29.023 Atomic orbital electron populations 1.20629 0.80501 1.06399 1.05658 1.25107 0.97987 0.84506 0.98976 1.22754 0.89963 1.02423 1.13076 1.20757 0.89152 0.89089 1.02222 1.42322 1.06527 1.05622 1.72424 1.20262 0.91150 0.80871 0.74536 1.90720 1.33679 1.68436 1.47075 1.23338 0.97351 0.96713 1.04590 0.83150 1.22087 1.02896 1.04941 0.90136 1.88718 1.11011 1.14373 1.82633 1.23579 0.98955 0.95639 1.07791 1.20392 0.83714 0.87523 0.78923 1.90708 1.31379 1.72390 1.52017 1.48094 1.07845 1.16823 1.60871 1.22038 0.83927 1.00061 1.00744 1.18789 0.95797 0.78906 0.92781 1.21731 1.50002 0.93057 0.93215 0.92723 1.25878 0.94625 0.94859 1.04002 1.70056 1.50589 0.98424 1.37721 0.85364 0.77937 0.78487 0.78995 1.19037 1.19265 1.21001 1.74015 0.98414 1.12965 1.26946 1.84765 1.10340 1.32850 1.68847 0.87771 0.87775 0.87473 0.80465 0.72503 0.88536 0.88544 0.92139 0.84070 0.83574 0.90634 0.91423 0.88207 0.95366 0.98564 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 71.23 0.74 0.23 16 2 C 0.00 -0.03 7.48 25.00 0.19 0.15 16 3 C -0.26 -5.69 9.79 22.52 0.22 -5.47 16 4 C 0.24 5.22 8.18 134.10 1.10 6.32 16 5 N -0.62 -10.64 5.42 -309.53 -1.68 -12.32 16 6 C 0.55 11.68 6.92 87.66 0.61 12.29 16 7 O -0.53 -15.85 13.42 -3.01 -0.04 -15.89 16 8 C -0.09 -1.43 3.17 29.85 0.09 -1.34 16 9 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 10 C -0.14 -1.55 9.08 71.98 0.65 -0.90 16 11 S -0.19 -5.69 19.59 -56.49 -1.11 -6.79 16 12 C -0.11 -2.71 4.67 71.24 0.33 -2.37 16 13 C 0.51 20.62 7.69 87.66 0.67 21.29 16 14 O -0.58 -31.17 15.44 -3.04 -0.05 -31.22 16 15 N -0.60 -24.60 2.86 -851.13 -2.43 -27.03 16 16 C 0.07 1.93 10.24 127.77 1.31 3.24 16 17 C 0.26 13.89 5.16 85.63 0.44 14.33 16 18 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 19 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 20 C 0.01 0.31 5.46 84.66 0.46 0.77 16 21 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 22 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 26 N -0.41 -8.94 12.10 -56.32 -0.68 -9.62 16 27 O 0.09 1.77 11.19 71.14 0.80 2.57 16 28 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.18 4.41 6.22 -2.91 -0.02 4.39 16 32 H 0.43 4.30 8.82 -92.70 -0.82 3.48 16 33 H 0.10 0.70 6.92 -2.39 -0.02 0.69 16 34 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.14 2.51 7.40 -2.39 -0.02 2.49 16 37 H 0.15 2.43 7.11 -2.39 -0.02 2.41 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.91 8.07 -2.39 -0.02 1.89 16 40 H 0.10 1.71 6.44 -2.39 -0.02 1.70 16 41 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 42 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -89.61 381.44 4.42 -85.19 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.23 Total: 6.47 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 7.06 Total: 17.61 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -4.51 Total: -105.15 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: 0.71 Total: -44.54 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -5.69 SS G_CDS: -1.11 Total: -6.79 kcal Total: -89.61 4.42 -85.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073002359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.589 kcal (2) G-P(sol) polarization free energy of solvation -89.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds