Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35252 * 126.69148 * 2 1 4 4 C 1.42028 * 103.95291 * 180.02562 * 3 2 1 5 5 N 1.39499 * 126.89247 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00368 * 0.02562 * 5 4 3 7 7 O 1.21274 * 119.99368 * 359.97438 * 6 5 4 8 8 C 1.50690 * 120.00266 * 179.97438 * 6 5 4 9 9 H 1.09006 * 109.47433 * 39.99557 * 8 6 5 10 10 C 1.53000 * 109.47295 * 279.99833 * 8 6 5 11 11 S 1.81401 * 109.47211 * 159.99455 * 8 6 5 12 12 C 1.81400 * 103.00097 * 184.99814 * 11 8 6 13 13 C 1.50706 * 109.47256 * 179.97438 * 12 11 8 14 14 O 1.21279 * 119.99507 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00020 * 180.02562 * 13 12 11 16 16 C 1.46495 * 119.99828 * 0.02562 * 15 13 12 17 17 C 1.46496 * 119.99544 * 180.02562 * 15 13 12 18 18 C 1.50699 * 109.47598 * 90.00303 * 17 15 13 19 19 H 1.08005 * 119.99628 * 359.97438 * 18 17 15 20 20 C 1.37877 * 120.00538 * 179.97438 * 18 17 15 21 21 N 1.31511 * 119.99774 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46901 * 90.00358 * 22 20 18 24 24 H 1.48498 * 109.46773 * 209.99999 * 22 20 18 25 25 H 1.48494 * 109.46962 * 330.00109 * 22 20 18 26 26 N 1.30722 * 106.21134 * 0.23789 * 4 3 2 27 27 O 1.20913 * 111.47354 * 359.57601 * 26 4 3 28 28 H 1.09007 * 109.47268 * 90.00289 * 1 2 3 29 29 H 1.09000 * 109.47272 * 209.99968 * 1 2 3 30 30 H 1.09002 * 109.47348 * 330.00459 * 1 2 3 31 31 H 1.07990 * 128.02584 * 359.97438 * 3 2 1 32 32 H 0.97006 * 119.99909 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47177 * 59.99824 * 10 8 6 34 34 H 1.09000 * 109.47056 * 180.02562 * 10 8 6 35 35 H 1.08995 * 109.46998 * 299.99838 * 10 8 6 36 36 H 1.09001 * 109.46713 * 60.00360 * 12 11 8 37 37 H 1.09000 * 109.47712 * 300.00668 * 12 11 8 38 38 H 1.08997 * 109.47477 * 90.00366 * 16 15 13 39 39 H 1.09004 * 109.46971 * 209.99938 * 16 15 13 40 40 H 1.08993 * 109.47768 * 330.00002 * 16 15 13 41 41 H 1.09008 * 109.47096 * 209.99661 * 17 15 13 42 42 H 1.09003 * 109.47776 * 329.99537 * 17 15 13 43 43 H 0.97002 * 119.99965 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6250 0.5356 -0.0006 5 7 4.8286 1.2408 -0.0014 6 6 4.8200 2.5886 -0.0010 7 8 3.7658 3.1881 -0.0006 8 6 6.1202 3.3504 -0.0012 9 1 6.8315 2.8550 -0.6621 10 6 6.6873 3.3918 1.4192 11 16 5.8293 5.0428 -0.5858 12 6 7.5016 5.7414 -0.6617 13 6 7.4285 7.1689 -1.1395 14 8 6.3540 7.6660 -1.4025 15 7 8.5572 7.8929 -1.2746 16 6 9.8551 7.2921 -0.9575 17 6 8.4860 9.2806 -1.7386 18 6 8.3383 10.1997 -0.5534 19 1 8.3008 9.7909 0.4455 20 6 8.2511 11.5624 -0.7443 21 7 8.2963 12.0602 -1.9608 22 14 8.0673 12.7015 0.7248 23 1 9.4117 13.1058 1.2088 24 1 7.3024 13.9089 0.3222 25 1 7.3418 11.9952 1.8110 26 7 3.4764 -0.7632 -0.0061 27 8 2.3082 -1.0751 -0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 2.0305 2.1262 -0.0004 32 1 5.6718 0.7612 -0.0014 33 1 6.8621 2.3749 1.7704 34 1 7.6275 3.9433 1.4190 35 1 5.9760 3.8872 2.0800 36 1 8.1081 5.1576 -1.3540 37 1 7.9529 5.7125 0.3300 38 1 10.2663 6.8227 -1.8511 39 1 10.5378 8.0662 -0.6069 40 1 9.7271 6.5406 -0.1785 41 1 9.3986 9.5300 -2.2801 42 1 7.6274 9.3993 -2.3996 43 1 8.2345 13.0188 -2.0951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073002360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = 5.775285 kcal Electronic energy + Delta-G solvation = -26203.416622 eV Core-core repulsion = 22186.365569 eV Total energy + Delta-G solvation = -4017.051053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.18322 -40.50201 -38.95179 -35.98005 -34.91716 -34.19019 -33.71063 -32.69475 -31.95385 -30.04950 -28.16270 -27.45649 -25.75968 -25.58434 -23.84737 -22.82571 -21.82475 -21.03409 -18.84609 -18.00766 -17.85879 -17.51425 -17.07154 -16.62385 -16.43514 -16.20114 -15.73006 -15.17400 -15.14062 -14.73787 -14.29189 -14.00508 -13.88259 -13.83505 -13.65673 -13.28435 -13.18519 -12.81947 -12.68074 -12.44026 -12.26549 -12.07234 -12.01241 -11.94796 -11.84132 -11.57340 -11.22342 -10.91493 -10.60694 -10.40066 -10.18338 -9.81206 -9.72963 -9.67035 -9.22478 -9.11421 -8.45974 -7.77242 -7.59654 -6.06855 -4.11885 1.03362 1.15919 1.63427 2.19937 2.36954 2.48171 2.81301 3.24494 3.29136 3.36426 3.41403 3.82040 3.86174 4.13558 4.39094 4.42828 4.51269 4.56017 4.72562 4.89353 4.94185 5.00724 5.04128 5.09135 5.17747 5.20039 5.27755 5.31415 5.44592 5.55691 5.61261 5.69118 5.81959 6.02120 6.10609 6.60820 6.95252 7.38189 7.44902 7.48698 7.88682 7.96049 8.18788 8.27173 8.82701 8.97637 9.53222 11.01299 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.001952 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.326587 B =14342.486223 C =14890.755443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.226 4.226 4 C 0.250 3.750 5 N -0.630 5.630 6 C 0.548 3.452 7 O -0.484 6.484 8 C -0.118 4.118 9 H 0.112 0.888 10 C -0.144 4.144 11 S -0.094 6.094 12 C -0.141 4.141 13 C 0.521 3.479 14 O -0.519 6.519 15 N -0.598 5.598 16 C 0.082 3.918 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 N -0.392 5.392 27 O 0.095 5.905 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.192 0.808 32 H 0.419 0.581 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 -27.061 5.093 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.249 4.249 4 C 0.001 3.999 5 N -0.283 5.283 6 C 0.333 3.667 7 O -0.353 6.353 8 C -0.250 4.250 9 H 0.130 0.870 10 C -0.203 4.203 11 S 0.132 5.868 12 C -0.292 4.292 13 C 0.305 3.695 14 O -0.395 6.395 15 N -0.331 5.331 16 C -0.062 4.062 17 C 0.127 3.873 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.207 1.207 24 H -0.210 1.210 25 H -0.198 1.198 26 N -0.108 5.108 27 O 0.035 5.965 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.209 0.791 32 H 0.256 0.744 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.803 -26.635 4.570 27.867 hybrid contribution 1.678 0.528 1.077 2.063 sum -5.124 -26.107 5.646 27.198 Atomic orbital electron populations 1.20368 0.83606 1.04813 1.04352 1.24462 0.96547 0.85710 1.01913 1.22771 0.89219 1.02323 1.10611 1.20503 0.88418 0.88871 1.02141 1.42449 1.06227 1.06167 1.73413 1.19882 0.90975 0.80488 0.75390 1.90726 1.32052 1.67483 1.45089 1.23383 0.97540 1.00861 1.03169 0.86975 1.22050 1.02441 1.03170 0.92675 1.88299 1.07591 1.04272 1.86671 1.23811 0.99775 0.99779 1.05870 1.19304 0.85088 0.85543 0.79581 1.90736 1.27683 1.71370 1.49732 1.48093 1.04697 1.15187 1.65078 1.21671 0.86571 0.98727 0.99255 1.19347 0.98515 0.73827 0.95614 1.21410 1.50805 0.91262 0.93212 0.92415 1.24942 0.95005 0.98112 0.96065 1.69928 1.50109 1.12986 1.20241 0.86478 0.78028 0.80206 0.82627 1.20658 1.21024 1.19829 1.74033 0.97738 1.13028 1.26024 1.84785 1.10385 1.32395 1.68952 0.89175 0.89727 0.88736 0.79129 0.74389 0.91482 0.90529 0.90169 0.87836 0.87526 0.93559 0.90451 0.92629 0.94765 0.93644 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.45 36.00 0.38 0.06 16 2 C -0.02 -0.19 7.48 -35.37 -0.26 -0.46 16 3 C -0.23 -2.44 9.79 -39.19 -0.38 -2.82 16 4 C 0.25 2.79 8.18 -154.82 -1.27 1.52 16 5 N -0.63 -5.81 5.42 -11.44 -0.06 -5.87 16 6 C 0.55 6.10 6.97 -10.99 -0.08 6.02 16 7 O -0.48 -7.10 13.33 5.56 0.07 -7.02 16 8 C -0.12 -1.11 3.18 -27.89 -0.09 -1.20 16 9 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 10 C -0.14 -1.09 9.08 37.16 0.34 -0.75 16 11 S -0.09 -1.42 19.53 -107.50 -2.10 -3.52 16 12 C -0.14 -1.96 4.67 36.01 0.17 -1.79 16 13 C 0.52 10.64 7.69 -10.98 -0.08 10.56 16 14 O -0.52 -13.23 15.44 5.56 0.09 -13.14 16 15 N -0.60 -12.29 2.86 -182.96 -0.52 -12.82 16 16 C 0.08 1.19 10.24 59.84 0.61 1.81 16 17 C 0.25 6.36 5.16 -5.20 -0.03 6.33 16 18 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 19 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 22 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 N -0.39 -4.43 12.10 31.19 0.38 -4.05 16 27 O 0.10 0.96 11.19 17.07 0.19 1.15 16 28 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.19 2.22 6.22 -52.49 -0.33 1.89 16 32 H 0.42 2.54 8.82 -40.82 -0.36 2.18 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.51 6.92 -51.93 -0.36 0.15 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.12 8.11 -51.92 -0.42 0.70 16 37 H 0.11 1.22 6.40 -51.92 -0.33 0.89 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 40 H 0.06 0.62 6.44 -51.93 -0.33 0.29 16 41 H 0.03 0.89 8.07 -51.92 -0.42 0.47 16 42 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -37.36 381.34 -7.47 -44.84 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.86 Total: -2.11 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -1.12 Total: 5.73 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.53 Total: -48.50 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.35 Total: -19.01 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.10 Total: -3.52 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.36 -7.47 -44.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073002360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.612 kcal (2) G-P(sol) polarization free energy of solvation -37.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds