Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35252 * 126.69148 * 2 1 4 4 C 1.42028 * 103.95291 * 180.02562 * 3 2 1 5 5 N 1.39499 * 126.89247 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00368 * 0.02562 * 5 4 3 7 7 O 1.21274 * 119.99368 * 359.97438 * 6 5 4 8 8 C 1.50690 * 120.00266 * 179.97438 * 6 5 4 9 9 H 1.09006 * 109.47433 * 39.99557 * 8 6 5 10 10 C 1.53000 * 109.47295 * 279.99833 * 8 6 5 11 11 S 1.81401 * 109.47211 * 159.99455 * 8 6 5 12 12 C 1.81400 * 103.00097 * 184.99814 * 11 8 6 13 13 C 1.50706 * 109.47256 * 179.97438 * 12 11 8 14 14 O 1.21279 * 119.99507 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00020 * 180.02562 * 13 12 11 16 16 C 1.46495 * 119.99828 * 0.02562 * 15 13 12 17 17 C 1.46496 * 119.99544 * 180.02562 * 15 13 12 18 18 C 1.50699 * 109.47598 * 90.00303 * 17 15 13 19 19 H 1.08005 * 119.99628 * 359.97438 * 18 17 15 20 20 C 1.37877 * 120.00538 * 179.97438 * 18 17 15 21 21 N 1.31511 * 119.99774 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46901 * 90.00358 * 22 20 18 24 24 H 1.48498 * 109.46773 * 209.99999 * 22 20 18 25 25 H 1.48494 * 109.46962 * 330.00109 * 22 20 18 26 26 N 1.30722 * 106.21134 * 0.23789 * 4 3 2 27 27 O 1.20913 * 111.47354 * 359.57601 * 26 4 3 28 28 H 1.09007 * 109.47268 * 90.00289 * 1 2 3 29 29 H 1.09000 * 109.47272 * 209.99968 * 1 2 3 30 30 H 1.09002 * 109.47348 * 330.00459 * 1 2 3 31 31 H 1.07990 * 128.02584 * 359.97438 * 3 2 1 32 32 H 0.97006 * 119.99909 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47177 * 59.99824 * 10 8 6 34 34 H 1.09000 * 109.47056 * 180.02562 * 10 8 6 35 35 H 1.08995 * 109.46998 * 299.99838 * 10 8 6 36 36 H 1.09001 * 109.46713 * 60.00360 * 12 11 8 37 37 H 1.09000 * 109.47712 * 300.00668 * 12 11 8 38 38 H 1.08997 * 109.47477 * 90.00366 * 16 15 13 39 39 H 1.09004 * 109.46971 * 209.99938 * 16 15 13 40 40 H 1.08993 * 109.47768 * 330.00002 * 16 15 13 41 41 H 1.09008 * 109.47096 * 209.99661 * 17 15 13 42 42 H 1.09003 * 109.47776 * 329.99537 * 17 15 13 43 43 H 0.97002 * 119.99965 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6250 0.5356 -0.0006 5 7 4.8286 1.2408 -0.0014 6 6 4.8200 2.5886 -0.0010 7 8 3.7658 3.1881 -0.0006 8 6 6.1202 3.3504 -0.0012 9 1 6.8315 2.8550 -0.6621 10 6 6.6873 3.3918 1.4192 11 16 5.8293 5.0428 -0.5858 12 6 7.5016 5.7414 -0.6617 13 6 7.4285 7.1689 -1.1395 14 8 6.3540 7.6660 -1.4025 15 7 8.5572 7.8929 -1.2746 16 6 9.8551 7.2921 -0.9575 17 6 8.4860 9.2806 -1.7386 18 6 8.3383 10.1997 -0.5534 19 1 8.3008 9.7909 0.4455 20 6 8.2511 11.5624 -0.7443 21 7 8.2963 12.0602 -1.9608 22 14 8.0673 12.7015 0.7248 23 1 9.4117 13.1058 1.2088 24 1 7.3024 13.9089 0.3222 25 1 7.3418 11.9952 1.8110 26 7 3.4764 -0.7632 -0.0061 27 8 2.3082 -1.0751 -0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 2.0305 2.1262 -0.0004 32 1 5.6718 0.7612 -0.0014 33 1 6.8621 2.3749 1.7704 34 1 7.6275 3.9433 1.4190 35 1 5.9760 3.8872 2.0800 36 1 8.1081 5.1576 -1.3540 37 1 7.9529 5.7125 0.3300 38 1 10.2663 6.8227 -1.8511 39 1 10.5378 8.0662 -0.6069 40 1 9.7271 6.5406 -0.1785 41 1 9.3986 9.5300 -2.2801 42 1 7.6274 9.3993 -2.3996 43 1 8.2345 13.0188 -2.0951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073002360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = -20.387652 kcal Electronic energy + Delta-G solvation = -26204.551132 eV Core-core repulsion = 22186.365569 eV Total energy + Delta-G solvation = -4018.185563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.96341 -41.36596 -40.56871 -36.83029 -36.63443 -34.94430 -34.75569 -34.36759 -32.72843 -31.51861 -29.16207 -28.70572 -27.25565 -26.32989 -24.79841 -24.61412 -22.59999 -21.85757 -20.35003 -18.79532 -18.71752 -18.61763 -18.47791 -17.95137 -17.86004 -17.31913 -16.78996 -16.64359 -16.52316 -15.99088 -15.55601 -14.97523 -14.76128 -14.60725 -14.40184 -14.27379 -14.06977 -13.97678 -13.77255 -13.56207 -13.44194 -13.35198 -13.15342 -13.00404 -12.84857 -12.81334 -12.76938 -12.49401 -12.28275 -12.21282 -11.72141 -11.28017 -10.79597 -10.73030 -10.64666 -10.44981 -10.02330 -9.46708 -8.74427 -8.23413 -6.38062 0.13028 0.31823 0.83106 1.35656 1.37875 1.39542 1.43261 1.49448 1.65544 1.73910 2.14272 2.30267 2.44171 3.06424 3.11156 3.37342 3.64102 3.73829 3.84852 3.92787 4.02403 4.06546 4.20101 4.31937 4.46520 4.62315 4.69423 4.70375 4.71911 4.73914 4.85042 4.96001 5.00397 5.11977 5.13801 5.21848 5.25857 5.53827 5.80722 5.92556 6.04254 6.65148 6.70673 6.73403 7.19276 7.25712 7.41230 8.83656 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.001952 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.326587 B =14342.486223 C =14890.755443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.002 4.002 3 C -0.259 4.259 4 C 0.237 3.763 5 N -0.614 5.614 6 C 0.546 3.454 7 O -0.526 6.526 8 C -0.088 4.088 9 H 0.154 0.846 10 C -0.144 4.144 11 S -0.192 6.192 12 C -0.110 4.110 13 C 0.507 3.493 14 O -0.584 6.584 15 N -0.605 5.605 16 C 0.074 3.926 17 C 0.259 3.741 18 C -0.542 4.542 19 H 0.055 0.945 20 C 0.006 3.994 21 N -0.928 5.928 22 Si 0.968 3.032 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.274 1.274 26 N -0.405 5.405 27 O 0.091 5.909 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.177 0.823 32 H 0.435 0.565 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.028 0.972 42 H -0.004 1.004 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 -29.594 6.823 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 C -0.282 4.282 4 C -0.012 4.012 5 N -0.268 5.268 6 C 0.332 3.668 7 O -0.399 6.399 8 C -0.220 4.220 9 H 0.172 0.828 10 C -0.202 4.202 11 S 0.034 5.966 12 C -0.260 4.260 13 C 0.294 3.706 14 O -0.465 6.465 15 N -0.336 5.336 16 C -0.068 4.068 17 C 0.138 3.862 18 C -0.581 4.581 19 H 0.073 0.927 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.792 3.208 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.199 1.199 26 N -0.123 5.123 27 O 0.032 5.968 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.195 0.805 32 H 0.275 0.725 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.046 0.954 42 H 0.014 0.986 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.152 -29.235 6.315 30.350 hybrid contribution 1.123 1.213 0.504 1.728 sum -4.029 -28.022 6.819 29.120 Atomic orbital electron populations 1.20626 0.80527 1.06280 1.05754 1.25096 0.97976 0.84519 0.98990 1.22769 0.89996 1.02376 1.13060 1.20751 0.89144 0.89100 1.02210 1.42295 1.06516 1.05573 1.72444 1.20259 0.91130 0.80893 0.74555 1.90726 1.33704 1.68431 1.47070 1.23338 0.97221 0.96252 1.05156 0.82826 1.22096 1.02372 1.05151 0.90608 1.88745 1.10342 1.09811 1.87732 1.23582 0.99132 0.94978 1.08356 1.20396 0.83822 0.88025 0.78313 1.90706 1.30115 1.73392 1.52282 1.48091 1.07406 1.13402 1.64744 1.22032 0.83379 0.99289 1.02052 1.18784 0.95897 0.77255 0.94309 1.21700 1.50691 0.92102 0.93589 0.92717 1.25877 0.94554 0.99901 0.99008 1.70050 1.50902 1.13478 1.22359 0.85410 0.78779 0.77788 0.78817 1.18557 1.20800 1.19858 1.74019 0.98390 1.12931 1.26928 1.84755 1.10342 1.32815 1.68903 0.87603 0.87639 0.87834 0.80528 0.72472 0.88371 0.88673 0.92339 0.83575 0.84105 0.90690 0.91404 0.88194 0.95394 0.98591 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 71.24 0.74 0.23 16 2 C 0.00 -0.03 7.48 25.00 0.19 0.15 16 3 C -0.26 -5.66 9.79 22.52 0.22 -5.44 16 4 C 0.24 5.17 8.18 134.11 1.10 6.26 16 5 N -0.61 -10.41 5.42 -309.53 -1.68 -12.09 16 6 C 0.55 11.61 6.97 87.65 0.61 12.23 16 7 O -0.53 -15.94 13.33 -3.01 -0.04 -15.98 16 8 C -0.09 -1.43 3.18 29.84 0.09 -1.33 16 9 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 10 C -0.14 -1.64 9.08 71.98 0.65 -0.99 16 11 S -0.19 -5.67 19.53 -56.49 -1.10 -6.78 16 12 C -0.11 -2.74 4.67 71.24 0.33 -2.40 16 13 C 0.51 20.67 7.69 87.66 0.67 21.34 16 14 O -0.58 -31.25 15.44 -3.02 -0.05 -31.29 16 15 N -0.60 -24.65 2.86 -851.15 -2.43 -27.08 16 16 C 0.07 1.94 10.24 127.77 1.31 3.24 16 17 C 0.26 13.92 5.16 85.63 0.44 14.36 16 18 C -0.54 -31.24 9.39 25.60 0.24 -31.00 16 19 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 20 C 0.01 0.32 5.46 84.66 0.46 0.78 16 21 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 22 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 26 N -0.41 -8.79 12.10 -56.32 -0.68 -9.47 16 27 O 0.09 1.75 11.19 71.27 0.80 2.54 16 28 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.18 4.40 6.22 -2.92 -0.02 4.39 16 32 H 0.44 4.09 8.82 -92.70 -0.82 3.27 16 33 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.77 6.92 -2.39 -0.02 0.76 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.15 2.41 8.11 -2.39 -0.02 2.39 16 37 H 0.14 2.54 6.40 -2.39 -0.02 2.52 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.91 8.07 -2.38 -0.02 1.89 16 40 H 0.10 1.71 6.44 -2.39 -0.02 1.70 16 41 H 0.03 1.51 8.07 -2.38 -0.02 1.49 16 42 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 43 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -89.75 381.34 4.43 -85.33 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.23 Total: 6.38 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 7.07 Total: 17.44 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -4.51 Total: -104.86 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: 0.71 Total: -44.73 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: -5.67 SS G_CDS: -1.10 Total: -6.78 kcal Total: -89.75 4.43 -85.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073002360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.941 kcal (2) G-P(sol) polarization free energy of solvation -89.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds